Pseudonocardia autotrophica 394, Kodai | Type strain | DSM 535, ATCC 19727, CBS 466.68, DSM 40011, DSM 43210, IFO 12743, ISP 5011, KCC S-0348, NBRC 12743, RIA 1008

Strain identifier

BacDive ID: 13324

Type strain:

Species: Pseudonocardia autotrophica

Strain Designation: 394, Kodai

Culture col. no.: DSM 535, ATCC 19727, CBS 466.68, DSM 40011, DSM 43210, IFO 12743, ISP 5011, KCC S-0348, NBRC 12743, RIA 1008

Section

Name and taxonomic classification
Culture and growth conditions
Isolation, sampling and environmental information
Application and interaction
Molecular biology
Strain availability

External links

Information on the name and the taxonomic classification.Name and taxonomic classification

[Ref.: #130]	Domain	Bacteria
[Ref.: #130]	Phylum	Actinobacteria
[Ref.: #130]	Class	Actinobacteria
[Ref.: #130]	Order	Actinomycetales
[Ref.: #130]	Family	Pseudonocardiaceae
[Ref.: #130]	Genus	Pseudonocardia
[Ref.: #130]	Species	Pseudonocardia autotrophica
[Ref.: #130]	Full Scientific Name	Pseudonocardia autotrophica (Takamiya and Tubaki 1956) Warwick et al. 1994
[Ref.: #130]	Strain Designation	394, Kodai
[Ref.: #130]	Type strain

		Prokaryotic Nomenclature Up-to-date (PNU)	Taxonomical status	Literature reference
[Ref.: #20215]	Domain	Bacteria
[Ref.: #20215]	Phylum	Actinobacteria
[Ref.: #20215]	Class	Actinobacteria		Int. J. Syst. Bacteriol. 47:483*
[Ref.: #20215]	Family	Pseudonocardiaceae		Int. J. Syst. Bacteriol. 39:205
[Ref.: #20215]	Genus	Pseudonocardia	genus (AL)	Int. J. Syst. Bacteriol. 30:355 (AL)
[Ref.: #20215]	Species	Pseudonocardia autotrophica	comb. nov. (VP)	Int. J. Syst. Bacteriol. 44:298*
[Ref.: #20215]	Full Scientific Name	Pseudonocardia autotrophica (Takamiya and Tubaki 1956) Warwick et al. 1994

[Ref.: #20215]	Synonym	Amycolata autotrophica
[Ref.: #20215]	Synonym	Nocardia autotrophica
[Ref.: #20215]	Synonym	Streptomyces autotrophicus

Information on culture and growth conditionsCulture and growth conditions

[Ref.: #130]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65), 28°C

[Ref.: #130]

Culture medium growth

[Ref.: #130]

Culture medium link

medium recipe provided by DSMZ

[Ref.: #130]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535), 28°C

[Ref.: #130]

Culture medium growth

[Ref.: #130]

Culture medium link

medium recipe provided by DSMZ

[Ref.: #33085]

Culture medium

MEDIUM 57 - for Streptomyces, Nocardioides, Lentzea albidocapillata and Streptoverticillium reticulum

[Ref.: #33085]

Culture medium growth

[Ref.: #33085]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #130]			growth	28 ̊C
[Ref.: #33085]			growth	30 ̊C

[Ref.: #130]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditionsIsolation, sampling and environmental information

[Ref.: #130]

Sample type/isolated from

phosphate buffer

Isolation sources categories

#Engineered

#Laboratory

What are isolation sources categories?

* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hostsApplication and interaction

[Ref.: #130]	Pathogenicity (human)	yes
[Ref.: #130]	Biosafety level	1	Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databassMolecular biology

Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence database	Sequence accession description	Sequence accession number	Sequence length (bp)	Associated NCBI tax ID
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Pseudonocardia autotrophica elongation factor Tu-like gene, partial sequence	EU928956	1047	2074	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Pseudonocardia autotrophica 16S ribosomal RNA gene, partial sequence	EU928972	1380	2074	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Pseudonocardia autotrophica BCRC12444 fad gene cluster, partial sequence	AY827104	4656	2074	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Amycolata autotrophica (Nocardia a.) partial 16S rRNA	X54288	1332	2074	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Pseudonocardia autotrophica strain DSM 535 elongation factor G (fusA) gene, partial cds	EU722532	784	2074	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Pseudonocardia autotrophica strain DSM 535 DNA gyrase B subunit (gyrB) gene, partial cds	EU722566	998	2074	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Pseudonocardia autotrophica strain DSM 535 GTP-binding protein LepA (lepA) gene, partial cds	EU722591	1008	2074	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Pseudonocardia autotrophica strain DSM 535 RNA polymerase subunit B (rpoB) gene, partial cds	EU722621	811	2074	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Amycolata autotrophica cytochrome P450 hydroxylase gene, partial cds	AF071148	360	2074	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Pseudonocardia autotrophica 16S rRNA gene, strain IMSNU 20050T	AJ252824	1512	2074	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Pseudonocardia autotrophica vdh gene for vitamin D hydroxylase, complete cds, strain: NBRC 12743	AB456955	1212	2074	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Pseudonocardia autotrophica ORF B, ORF A, aceA genes for hypothetical proteins and acetone inducible protein, complete cds, strain: NBRC 12743	AB600172	5158	2074	*

Availability in culture collectionsStrain availability

[Ref.: #130]

Culture collection no.

DSM 535, ATCC 19727, CBS 466.68, DSM 40011, DSM 43210, IFO 12743, ISP 5011, KCC S-0348, NBRC 12743, RIA 1008

[Ref.: #130]

Strain history

<- IMG <- P. Hirsch, 394 <- A. Takamiya, Kodai

[Ref.: #20218]

Associated Passport(s) in StrainInfo

100393, 100389, 229116, 100394, 100395, 100396, 100390, 100399, 334371, 100402

References

#130	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 535

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#33085 ; Curators of the CIP;
* These References are textmined

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