Name: Frigoribacterium salinisoli LAM 9155
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133239

Type strain:

Species: Frigoribacterium salinisoli

Culture col. no.: LAM 9155, ACCC 19902, JCM 30848

Strain history: Z. Ruan; Inst. of Agric. Resour. & Reg. Plann., CAAS, China; LAM9155.

NCBI tax ID(s): 1616784 (species)

Section

Frigoribacterium salinisoli LAM 9155 is an aerobe, mesophilic, Gram-positive bacterium that forms circular colonies and was isolated from saline soil.

colony-forming
Gram-positive
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Microbacteriaceae*
	Genus	*Frigoribacterium*
	Species	**Frigoribacterium salinisoli**
	Full Scientific Name (LPSN)	Frigoribacterium salinisoli Kong et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #25090]	Gram stain	positive

[Ref.: #25090]	Cell length	0.8-1.2 µm

[Ref.: #25090]	Cell width	0.3-0.6 µm

[Ref.: #25090]	Cell shape	rod-shaped

[Ref.: #25090]	Motility	no

[Ref.: #25090]	Colony color	yellow
[Ref.: #25090]	Colony shape	circular
[Ref.: #25090]	Incubation period	1.5 days
[Ref.: #25090]	Cultivation medium used	TSA (Trypticase soy agar)

Information on culture and growth conditions Culture and growth conditions

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Culture medium

TSA (Trypticase soy agar)

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Culture medium growth

		Temperature
[Ref.: #25090]	optimum	25.0-30.0 °C
[Ref.: #25090]	growth	4.0-40.0 °C
[Ref.: #67770]	growth	25 °C

[Ref.: #25090]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #25090]			optimum	7
[Ref.: #25090]			growth	5.5-12.0

Information on physiology and metabolism Physiology and metabolism

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Oxygen tolerance

aerobe

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Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #25090]		NaCl		optimum	0.5	%(w/v)
[Ref.: #25090]		NaCl		growth	0.0-7.0	%(w/v)

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Observation

quinones: MK-9

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #25090]	(S)-lactate ChEBI	-	respiration
[Ref.: #25090]	(S)-lactate ChEBI	+	respiration
[Ref.: #25090]	2,3-butanediol ChEBI	-	respiration
[Ref.: #25090]	2-deoxyadenosine ChEBI	-	respiration
[Ref.: #25090]	2-hydroxybutyrate ChEBI	-	respiration
[Ref.: #25090]	2-oxoglutarate ChEBI	-	respiration
[Ref.: #25090]	2-oxopentanoate ChEBI	-	respiration
[Ref.: #25090]	3-hydroxybutyrate ChEBI	-	respiration
[Ref.: #25090]	3-O-methyl-D-glucose ChEBI	-	respiration
[Ref.: #25090]	4-hydroxybutyrate ChEBI	-	respiration
[Ref.: #25090]	4-hydroxyphenylacetic acid ChEBI	-	respiration
[Ref.: #25090]	5-dehydro-D-gluconate ChEBI	-	builds acid from
[Ref.: #25090]	acetate ChEBI	-	respiration
[Ref.: #25090]	adenosine ChEBI	-	respiration
[Ref.: #25090]	adipate ChEBI	-	assimilation
[Ref.: #25090]	alpha-cyclodextrin ChEBI	-	respiration
[Ref.: #25090]	alpha-D-glucose ChEBI	-	respiration
[Ref.: #25090]	amp ChEBI	-	respiration
[Ref.: #25090]	amygdalin ChEBI	-	respiration
[Ref.: #25090]	arabinose ChEBI	-	assimilation
[Ref.: #25090]	arbutin ChEBI	-	respiration
[Ref.: #25090]	beta-cyclodextrin ChEBI	-	respiration
[Ref.: #25090]	casein	-	hydrolysis
[Ref.: #25090]	cellobiose ChEBI	+	respiration
[Ref.: #25090]	citrate ChEBI	-	assimilation
[Ref.: #25090]	D-alanine ChEBI	-	respiration
[Ref.: #25090]	D-arabitol ChEBI	-	respiration
[Ref.: #25090]	D-fructose ChEBI	-	respiration
[Ref.: #25090]	D-fructose ChEBI	-	builds acid from
[Ref.: #25090]	D-fructose 6-phosphate ChEBI	-	respiration
[Ref.: #25090]	D-galactose ChEBI	-	respiration
[Ref.: #25090]	D-galacturonic acid ChEBI	-	respiration
[Ref.: #25090]	D-gluconate ChEBI	-	respiration
[Ref.: #25090]	D-glucose 6-phosphate ChEBI	-	respiration
[Ref.: #25090]	D-malate ChEBI	-	respiration
[Ref.: #25090]	D-mannitol ChEBI	-	respiration
[Ref.: #25090]	D-mannose ChEBI	-	respiration
[Ref.: #25090]	D-psicose ChEBI	-	respiration
[Ref.: #25090]	D-ribose ChEBI	+	respiration
[Ref.: #25090]	D-sorbitol ChEBI	-	respiration
[Ref.: #25090]	D-tagatose ChEBI	-	respiration
[Ref.: #25090]	D-xylose ChEBI	+	respiration
[Ref.: #25090]	dextrin ChEBI	-	respiration
[Ref.: #25090]	esculin ChEBI	+	hydrolysis
[Ref.: #25090]	gelatin ChEBI	-	hydrolysis
[Ref.: #25090]	gentiobiose ChEBI	-	respiration
[Ref.: #25090]	gentiobiose ChEBI	-	builds acid from
[Ref.: #25090]	gluconate ChEBI	-	assimilation
[Ref.: #25090]	glucose ChEBI	-	assimilation
[Ref.: #25090]	glucose ChEBI	-	fermentation
[Ref.: #25090]	glucose 1-phosphate ChEBI	-	respiration
[Ref.: #25090]	glycerol ChEBI	-	respiration
[Ref.: #25090]	glycerol 1-phosphate ChEBI	-	respiration
[Ref.: #25090]	glycogen ChEBI	-	respiration
[Ref.: #25090]	glycyl-l-glutamate ChEBI	-	respiration
[Ref.: #25090]	inosine ChEBI	-	respiration
[Ref.: #25090]	inulin ChEBI	-	respiration
[Ref.: #25090]	L-alaninamide ChEBI	-	respiration
[Ref.: #25090]	L-alanine ChEBI	-	respiration
[Ref.: #25090]	L-alanylglycine ChEBI	-	respiration
[Ref.: #25090]	L-arabinose ChEBI	-	respiration
[Ref.: #25090]	L-asparagine ChEBI	-	respiration
[Ref.: #25090]	L-fucose ChEBI	-	respiration
[Ref.: #25090]	L-glutamate ChEBI	-	respiration
[Ref.: #25090]	L-malate ChEBI	-	respiration
[Ref.: #25090]	L-pyroglutamic acid ChEBI	-	respiration
[Ref.: #25090]	L-rhamnose ChEBI	-	respiration
[Ref.: #25090]	L-serine ChEBI	-	respiration
[Ref.: #25090]	lactamide ChEBI	-	respiration
[Ref.: #25090]	lactose ChEBI	-	respiration
[Ref.: #25090]	lactulose ChEBI	-	respiration
[Ref.: #25090]	malate ChEBI	-	assimilation
[Ref.: #25090]	maltose ChEBI	-	assimilation
[Ref.: #25090]	maltose ChEBI	-	respiration
[Ref.: #25090]	maltotriose ChEBI	-	respiration
[Ref.: #25090]	mannan ChEBI	-	respiration
[Ref.: #25090]	mannitol ChEBI	-	assimilation
[Ref.: #25090]	mannose ChEBI	-	assimilation
[Ref.: #25090]	melezitose ChEBI	-	respiration
[Ref.: #25090]	melibiose ChEBI	-	builds acid from
[Ref.: #25090]	melibiose ChEBI	-	respiration
[Ref.: #25090]	methyl alpha-D-galactoside ChEBI	-	respiration
[Ref.: #25090]	methyl alpha-D-mannoside ChEBI	-	respiration
[Ref.: #25090]	methyl beta-D-galactoside ChEBI	-	respiration
[Ref.: #25090]	methyl D-glucoside ChEBI	-	respiration
[Ref.: #25090]	methyl pyruvate ChEBI	-	respiration
[Ref.: #25090]	monomethyl succinate ChEBI	-	respiration
[Ref.: #25090]	myo-inositol ChEBI	-	respiration
[Ref.: #25090]	N-acetyl-beta-D-mannosamine ChEBI	-	respiration
[Ref.: #25090]	N-acetyl-L-glutamate ChEBI	-	respiration
[Ref.: #25090]	N-acetylglucosamine ChEBI	-	respiration
[Ref.: #25090]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #25090]	nitrate ChEBI	-	reduction
[Ref.: #25090]	palatinose ChEBI	-	respiration
[Ref.: #25090]	phenylacetate ChEBI	-	assimilation
[Ref.: #25090]	propionate ChEBI	-	respiration
[Ref.: #25090]	putrescine ChEBI	+	respiration
[Ref.: #25090]	pyruvate ChEBI	-	respiration
[Ref.: #25090]	raffinose ChEBI	-	builds acid from
[Ref.: #25090]	raffinose ChEBI	-	respiration
[Ref.: #25090]	salicin ChEBI	-	respiration
[Ref.: #25090]	sedoheptulosan ChEBI	-	respiration
[Ref.: #25090]	stachyose ChEBI	-	respiration
[Ref.: #25090]	starch ChEBI	+	hydrolysis
[Ref.: #25090]	succinamate ChEBI	-	respiration
[Ref.: #25090]	succinate ChEBI	-	respiration
[Ref.: #25090]	succinate ChEBI	+	respiration
[Ref.: #25090]	sucrose ChEBI	-	builds acid from
[Ref.: #25090]	sucrose ChEBI	-	respiration
[Ref.: #25090]	thymidine ChEBI	-	respiration
[Ref.: #25090]	thymidine 5'-monophosphate ChEBI	-	respiration
[Ref.: #25090]	trehalose ChEBI	-	builds acid from
[Ref.: #25090]	trehalose ChEBI	-	respiration
[Ref.: #25090]	tryptophan ChEBI	-	energy source
[Ref.: #25090]	turanose ChEBI	-	respiration
[Ref.: #25090]	turanose ChEBI	+	builds acid from
[Ref.: #25090]	tween 20 ChEBI	+	hydrolysis
[Ref.: #25090]	tween 40 ChEBI	-	respiration
[Ref.: #25090]	tween 40 ChEBI	+	hydrolysis
[Ref.: #25090]	tween 60 ChEBI	+	hydrolysis
[Ref.: #25090]	tween 80 ChEBI	-	respiration
[Ref.: #25090]	tween 80 ChEBI	+	hydrolysis
[Ref.: #25090]	tyrosine ChEBI	+	hydrolysis
[Ref.: #25090]	urea ChEBI	-	hydrolysis
[Ref.: #25090]	uridine ChEBI	-	respiration
[Ref.: #25090]	uridine 5'-monophosphate ChEBI	-	respiration
[Ref.: #25090]	xylitol ChEBI	-	respiration
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #25090]		hydrogen sulfide ChEBI	no
[Ref.: #25090]		indole ChEBI	no

	Physiological tests	Metabolite	Methylred-test	Indole test
[Ref.: #25090]		glucose ChEBI	-
[Ref.: #25090]		indole ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #25090]	acid phosphatase	-	3.1.3.2
[Ref.: #25090]	alkaline phosphatase	-	3.1.3.1
[Ref.: #25090]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #25090]	alpha-fucosidase	-	3.2.1.51
[Ref.: #25090]	alpha-galactosidase	-	3.2.1.22
[Ref.: #25090]	alpha-glucosidase	+	3.2.1.20
[Ref.: #25090]	alpha-mannosidase	-	3.2.1.24
[Ref.: #25090]	arginine dihydrolase	+	3.5.3.6
[Ref.: #25090]	beta-galactosidase	-	3.2.1.23
[Ref.: #25090]	beta-glucuronidase	-	3.2.1.31
[Ref.: #25090]	catalase	+	1.11.1.6
[Ref.: #25090]	cystine arylamidase	-	3.4.11.3
[Ref.: #25090]	cytochrome oxidase	-	1.9.3.1
[Ref.: #25090]	esterase (C 4)	-
[Ref.: #25090]	esterase Lipase (C 8)	+
[Ref.: #25090]	leucine arylamidase	+	3.4.11.1
[Ref.: #25090]	lipase (C 14)	-
[Ref.: #25090]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #25090]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #25090]	trypsin	-	3.4.21.4
[Ref.: #25090]	tryptophan deaminase	-	4.1.99.1
[Ref.: #25090]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #25090]	Sample type/isolated from	saline soil
[Ref.: #25090]	Geographic location (country and/or sea, region)	Lingxian County, Shandong Province
[Ref.: #25090]	Country	Republic of China
[Ref.: #25090]	Country ISO 3 Code	CHN
[Ref.: #25090]	Continent	Asia
[Ref.: #25090]	Enrichment culture	NA (Nutrient Agar, BD/Difco 212000)
[Ref.: #25090]	Enrichment culture duration	7 days
[Ref.: #25090]	Enrichment culture temperature	30 ̊C

[Ref.: #67770]	Sample type/isolated from	Saline soil from Lingxian County
[Ref.: #67770]	Geographic location (country and/or sea, region)	Shandong Province
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Condition	#Saline	-

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #25090]	Frigoribacterium sp. LAM9155 clone 2 16S ribosomal RNA gene, partial sequence	KX094417	1479	GenBank	1616784 tax ID

[Ref.: #25090]

GC-content

68.2 mol%

thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #25090]

Culture collection no.

LAM 9155, ACCC 19902, JCM 30848

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Frigoribacterium salinisoli sp. nov., isolated from saline soil, transfer of Frigoribacterium mesophilum to Parafrigoribacterium gen. nov. as Parafrigoribacterium mesophilum comb. nov.	Kong D, Guo X, Zhou S, Wang H, Wang Y, Zhu J, Dong W, Li Y, He M, Hu G, Zhao B, Ruan Z	Int J Syst Evol Microbiol	10.1099/ijsem.0.001504	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#25090

D. G. Kong, X.,Zhou, S.,Wang, H.,Wang, Y.,Zhu, J.,Dong, W.,Li, Y.,He, M.,Hu, G.,Zhao, B.,Ruan, Z.: Frigoribacterium salinisoli sp. nov., isolated from saline soil, transfer of Frigoribacterium mesophilum to Parafrigoribacterium gen. nov. as Parafrigoribacterium mesophilum comb. nov. IJSEM 66: 5252 - 5259 2016 ( DOI 10.1099/ijsem.0.001504 , PubMed 27654623 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
* These data were automatically processed and therefore are not curated

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