Name: Saccharomonospora xiaoerkulensis TRM 41495
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133238

Type strain:

Species: Saccharomonospora xiaoerkulensis

Culture col. no.: TRM 41495, CCTCC AA 2015038, KCTC 39727

NCBI tax ID(s): 1778871 (species)

Section

Saccharomonospora xiaoerkulensis TRM 41495 is an aerobe, spore-forming, Gram-positive bacterium that has a brown pigmentation and was isolated from silt sample.

Gram-positive
pigmented
spore-forming
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Pseudonocardiales*
	Family	*Pseudonocardiaceae*
	Genus	*Saccharomonospora*
	Species	**Saccharomonospora xiaoerkulensis**
	Full Scientific Name (LPSN)	Saccharomonospora xiaoerkulensis Li et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #25100]	Gram stain	positive

[Ref.: #25100]

Cultivation medium used

ISP medium 7

[Ref.: #25100]	Pigment production	yes
[Ref.: #25100]	Pigmentation color	brown

Information on culture and growth conditions Culture and growth conditions

[Ref.: #25100]

Culture medium

ISP medium 7

[Ref.: #25100]

Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #25100]			growth	25-43 °C
[Ref.: #25100]			optimum	37 °C

[Ref.: #25100]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #25100]			optimum	8
[Ref.: #25100]			growth	7.0-10.

Information on physiology and metabolism Physiology and metabolism

[Ref.: #25100]

Oxygen tolerance

aerobe

[Ref.: #25100]	Spore description	spores are oval in shape with smooth surface
[Ref.: #25100]	Ability of spore formation	yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #25100]		NaCl		maximum	15	%(w/v)
[Ref.: #25100]		NaCl		optimum	3	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #25100]	cellobiose ChEBI	-	carbon source
[Ref.: #25100]	cellulose ChEBI	-	degradation
[Ref.: #25100]	chitosan ChEBI	+	carbon source
[Ref.: #25100]	D-fructose ChEBI	-	carbon source
[Ref.: #25100]	D-galactose ChEBI	+	carbon source
[Ref.: #25100]	gelatin ChEBI	-	degradation
[Ref.: #25100]	inulin ChEBI	-	carbon source
[Ref.: #25100]	L-rhamnose ChEBI	-	carbon source
[Ref.: #25100]	maltose ChEBI	-	carbon source
[Ref.: #25100]	mannitol ChEBI	-	carbon source
[Ref.: #25100]	myo-inositol ChEBI	-	carbon source
[Ref.: #25100]	nitrate ChEBI	+	reduction
[Ref.: #25100]	raffinose ChEBI	-	carbon source
[Ref.: #25100]	ribitol ChEBI	-	carbon source
[Ref.: #25100]	ribose ChEBI	-	carbon source
[Ref.: #25100]	sorbitol ChEBI	+	carbon source
[Ref.: #25100]	starch ChEBI	-	degradation
[Ref.: #25100]	tween 20 ChEBI	+	hydrolysis
[Ref.: #25100]	tween 40 ChEBI	+	hydrolysis
[Ref.: #25100]	tween 60 ChEBI	+	hydrolysis
[Ref.: #25100]	tween 80 ChEBI	+	hydrolysis
[Ref.: #25100]	urea ChEBI	-	hydrolysis
[Ref.: #25100]	xylose ChEBI	-	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #25100]		catalase	+	1.11.1.6
[Ref.: #25100]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #25100]	Sample type/isolated from	silt sample
[Ref.: #25100]	Geographic location (country and/or sea, region)	Xiaoerkule Lake, Atush city, Xinjiang province
[Ref.: #25100]	Country	China
[Ref.: #25100]	Country ISO 3 Code	CHN
[Ref.: #25100]	Continent	Asia
[Ref.: #25100]	Enrichment culture duration	7 days
[Ref.: #25100]	Enrichment culture temperature	37 ̊C
[Ref.: #25100]	Isolation/enrichment procedure	standard dilution plate method
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Mud (Sludge)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KU511278 (>99% sequence identity) for Saccharomonospora from Microbeatlas

Aquatic Samples	16
Soil Samples	35
Animal Samples	18
Plant Samples	2
Total Samples	71

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #25100]	Saccharomonospora sp. TRM 41495 16S ribosomal RNA gene, partial sequence	KU511278	1495	GenBank	1778871 tax ID

[Ref.: #25100]

GC-content

72.9 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #25100]

Culture collection no.

TRM 41495, CCTCC AA 2015038, KCTC 39727

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Saccharomonospora xiaoerkulensis sp. nov., isolated from lake sediment.	Li D, Chen ZJ, Luo XX, Xia ZF, Wan CX, Zhang LL	Int J Syst Evol Microbiol	10.1099/ijsem.0.001487	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#25100

D. C. Li, Z. J.,Luo, X. X.,Xia, Z. F.,Wan, C. X.,Zhang, L. L.: Saccharomonospora xiaoerkulensis sp. nov., isolated from lake sediment. IJSEM 66: 5145 - 5149 2016 ( DOI 10.1099/ijsem.0.001487 , PubMed 27620889 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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