Name: Halomonas lutescens Q1U
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133225

Type strain:

Species: Halomonas lutescens

Strain Designation: Q1U

Culture col. no.: CGMCC 1.15122, KCTC 42517

NCBI tax ID(s): 1602943 (species)

Section

Halomonas lutescens Q1U is a facultative anaerobe, moderately halophilic, Gram-negative bacterium that forms circular colonies and was isolated from sediment sample.

colony-forming
Gram-negative
rod-shaped
facultative anaerobe
moderately halophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Oceanospirillales*
	Family	*Halomonadaceae*
	Genus	*Halomonas*
	Species	**Halomonas lutescens**
	Full Scientific Name (LPSN)	Halomonas lutescens Wang et al. 2016

Synonym

"Vreelandella lutescens"

Information on morphological and physiological properties Morphology

[Ref.: #25037]	Gram stain	negative

[Ref.: #25037]	Cell length	0.6-2.5 µm

[Ref.: #25037]	Cell width	0.2-0.3 µm

[Ref.: #25037]	Cell shape	rod-shaped

[Ref.: #25037]	Motility	no

[Ref.: #25037]	Colony size	0.5-4.0 mm
[Ref.: #25037]	Colony color	yellowish
[Ref.: #25037]	Colony shape	circular
[Ref.: #25037]	Incubation period	2-3 days
[Ref.: #25037]	Cultivation medium used	TSA

[Ref.: #25037]	Pigment production	no
[Ref.: #25037]	Pigment name	no diffusible pigments

Information on culture and growth conditions Culture and growth conditions

[Ref.: #25037]

Culture medium

Trypticase Soy Agar (TSA)

[Ref.: #25037]

Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #25037]			growth	2-37 °C
[Ref.: #25037]			optimum	30-33 °C

[Ref.: #25037]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #25037]			optimum	7
[Ref.: #25037]			growth	6.0-9.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #25037]

Oxygen tolerance

facultative anaerobe

[Ref.: #25037]

Ability of spore formation

[Ref.: #25037]

Halophily / tolerance level

moderately halophilic

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #25037]		NaCl		growth	0-20.0	%(w/v)
[Ref.: #25037]		NaCl		optimum	7.5	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #25037]	acetate ChEBI	+	carbon source
[Ref.: #25037]	acetate ChEBI	+	energy source
[Ref.: #25037]	acetate ChEBI	+	growth
[Ref.: #25037]	adenine ChEBI	+	hydrolysis
[Ref.: #25037]	alpha-lactose ChEBI	-	carbon source
[Ref.: #25037]	alpha-lactose ChEBI	-	energy source
[Ref.: #25037]	alpha-lactose ChEBI	-	builds acid from
[Ref.: #25037]	arbutin ChEBI	-	builds acid from
[Ref.: #25037]	benzoin ChEBI	+	carbon source
[Ref.: #25037]	benzoin ChEBI	+	energy source
[Ref.: #25037]	casein	-	hydrolysis
[Ref.: #25037]	cellobiose ChEBI	-	builds acid from
[Ref.: #25037]	cellobiose ChEBI	+	carbon source
[Ref.: #25037]	cellobiose ChEBI	+	energy source
[Ref.: #25037]	cellobiose ChEBI	+	growth
[Ref.: #25037]	citrate ChEBI	+	carbon source
[Ref.: #25037]	citrate ChEBI	+	energy source
[Ref.: #25037]	citrate ChEBI	+	growth
[Ref.: #25037]	D-fructose ChEBI	-	carbon source
[Ref.: #25037]	D-fructose ChEBI	-	energy source
[Ref.: #25037]	D-fructose ChEBI	-	builds acid from
[Ref.: #25037]	D-fructose ChEBI	-	growth
[Ref.: #25037]	D-galactose ChEBI	-	carbon source
[Ref.: #25037]	D-galactose ChEBI	-	energy source
[Ref.: #25037]	D-galactose ChEBI	-	builds acid from
[Ref.: #25037]	D-galactose ChEBI	-	growth
[Ref.: #25037]	D-glucose ChEBI	-	builds acid from
[Ref.: #25037]	D-glucose ChEBI	+	fermentation
[Ref.: #25037]	D-glucose ChEBI	+	carbon source
[Ref.: #25037]	D-glucose ChEBI	+	energy source
[Ref.: #25037]	D-glucose ChEBI	+	growth
[Ref.: #25037]	D-mannitol ChEBI	+	carbon source
[Ref.: #25037]	D-mannitol ChEBI	+	energy source
[Ref.: #25037]	D-mannitol ChEBI	+	growth
[Ref.: #25037]	D-mannose ChEBI	-	builds acid from
[Ref.: #25037]	D-mannose ChEBI	+	carbon source
[Ref.: #25037]	D-mannose ChEBI	+	energy source
[Ref.: #25037]	D-mannose ChEBI	+	growth
[Ref.: #25037]	D-rhamnose ChEBI	+	carbon source
[Ref.: #25037]	D-rhamnose ChEBI	+	energy source
[Ref.: #25037]	D-rhamnose ChEBI	+	growth
[Ref.: #25037]	D-ribose ChEBI	-	carbon source
[Ref.: #25037]	D-ribose ChEBI	-	energy source
[Ref.: #25037]	D-ribose ChEBI	-	builds acid from
[Ref.: #25037]	D-sorbitol ChEBI	-	builds acid from
[Ref.: #25037]	D-trehalose ChEBI	-	builds acid from
[Ref.: #25037]	D-trehalose ChEBI	+	carbon source
[Ref.: #25037]	D-trehalose ChEBI	+	energy source
[Ref.: #25037]	D-trehalose ChEBI	+	growth
[Ref.: #25037]	D-xylose ChEBI	-	carbon source
[Ref.: #25037]	D-xylose ChEBI	-	energy source
[Ref.: #25037]	D-xylose ChEBI	-	builds acid from
[Ref.: #25037]	dna ChEBI	-	hydrolysis
[Ref.: #25037]	erythritol ChEBI	-	carbon source
[Ref.: #25037]	erythritol ChEBI	-	energy source
[Ref.: #25037]	erythritol ChEBI	-	builds acid from
[Ref.: #25037]	esculin ChEBI	-	hydrolysis
[Ref.: #25037]	esculin ChEBI	+	builds acid from
[Ref.: #25037]	fumarate ChEBI	-	carbon source
[Ref.: #25037]	fumarate ChEBI	-	energy source
[Ref.: #25037]	fumarate ChEBI	-	growth
[Ref.: #25037]	gelatin ChEBI	-	hydrolysis
[Ref.: #25037]	gluconate ChEBI	+	oxidation
[Ref.: #25037]	glucose ChEBI	-	fermentation
[Ref.: #25037]	glycerol ChEBI	-	builds acid from
[Ref.: #25037]	glycerol ChEBI	+	carbon source
[Ref.: #25037]	glycerol ChEBI	+	energy source
[Ref.: #25037]	glycerol ChEBI	+	growth
[Ref.: #25037]	glycine ChEBI	-	nitrogen source
[Ref.: #25037]	glycogen ChEBI	-	carbon source
[Ref.: #25037]	glycogen ChEBI	-	energy source
[Ref.: #25037]	guanine ChEBI	-	hydrolysis
[Ref.: #25037]	hydroxyproline ChEBI	+	nitrogen source
[Ref.: #25037]	hypoxanthine ChEBI	+	hydrolysis
[Ref.: #25037]	inulin ChEBI	-	builds acid from
[Ref.: #25037]	inulin ChEBI	+	carbon source
[Ref.: #25037]	inulin ChEBI	+	energy source
[Ref.: #25037]	L-alanine ChEBI	+	nitrogen source
[Ref.: #25037]	L-arabinose ChEBI	-	carbon source
[Ref.: #25037]	L-arabinose ChEBI	-	energy source
[Ref.: #25037]	L-arabinose ChEBI	-	builds acid from
[Ref.: #25037]	L-arabinose ChEBI	-	growth
[Ref.: #25037]	L-arginine ChEBI	+	nitrogen source
[Ref.: #25037]	L-aspartate ChEBI	+	nitrogen source
[Ref.: #25037]	L-cysteine ChEBI	-	nitrogen source
[Ref.: #25037]	L-leucine ChEBI	+	nitrogen source
[Ref.: #25037]	L-lysine ChEBI	+	nitrogen source
[Ref.: #25037]	L-malate ChEBI	+	carbon source
[Ref.: #25037]	L-malate ChEBI	+	energy source
[Ref.: #25037]	L-ornithine ChEBI	+	nitrogen source
[Ref.: #25037]	L-phenylalanine ChEBI	+	nitrogen source
[Ref.: #25037]	L-proline-4-nitroanilide	+	nitrogen source
[Ref.: #25037]	L-rhamnose ChEBI	-	builds acid from
[Ref.: #25037]	L-sorbose ChEBI	+	builds acid from
[Ref.: #25037]	L-tryptophan ChEBI	-	nitrogen source
[Ref.: #25037]	L-tyrosine ChEBI	+	nitrogen source
[Ref.: #25037]	L-valine ChEBI	-	nitrogen source
[Ref.: #25037]	lactate ChEBI	-	carbon source
[Ref.: #25037]	lactate ChEBI	-	energy source
[Ref.: #25037]	lactose ChEBI	-	growth
[Ref.: #25037]	malonate ChEBI	-	growth
[Ref.: #25037]	maltose ChEBI	-	carbon source
[Ref.: #25037]	maltose ChEBI	-	energy source
[Ref.: #25037]	maltose ChEBI	-	builds acid from
[Ref.: #25037]	maltose ChEBI	-	growth
[Ref.: #25037]	myo-inositol ChEBI	+	builds acid from
[Ref.: #25037]	nitrate ChEBI	+	reduction
[Ref.: #25037]	nitrite ChEBI	-	reduction
[Ref.: #25037]	oxalate ChEBI	+	carbon source
[Ref.: #25037]	oxalate ChEBI	+	energy source
[Ref.: #25037]	pyruvate ChEBI	+	carbon source
[Ref.: #25037]	pyruvate ChEBI	+	energy source
[Ref.: #25037]	raffinose ChEBI	-	carbon source
[Ref.: #25037]	raffinose ChEBI	-	energy source
[Ref.: #25037]	raffinose ChEBI	-	builds acid from
[Ref.: #25037]	raffinose ChEBI	-	growth
[Ref.: #25037]	ribose ChEBI	-	growth
[Ref.: #25037]	sorbitol ChEBI	-	carbon source
[Ref.: #25037]	sorbitol ChEBI	-	energy source
[Ref.: #25037]	sorbitol ChEBI	-	growth
[Ref.: #25037]	starch ChEBI	-	hydrolysis
[Ref.: #25037]	starch ChEBI	-	builds acid from
[Ref.: #25037]	succinate ChEBI	-	carbon source
[Ref.: #25037]	succinate ChEBI	-	energy source
[Ref.: #25037]	succinate ChEBI	-	growth
[Ref.: #25037]	sucrose ChEBI	+	carbon source
[Ref.: #25037]	sucrose ChEBI	+	energy source
[Ref.: #25037]	sucrose ChEBI	+	builds acid from
[Ref.: #25037]	sucrose ChEBI	+	growth
[Ref.: #25037]	tartrate ChEBI	-	carbon source
[Ref.: #25037]	tartrate ChEBI	-	energy source
[Ref.: #25037]	tryptophan ChEBI	-	energy source
[Ref.: #25037]	tween 20 ChEBI	+	hydrolysis
[Ref.: #25037]	tween 40 ChEBI	+	hydrolysis
[Ref.: #25037]	tween 60 ChEBI	+	hydrolysis
[Ref.: #25037]	tween 80 ChEBI	-	hydrolysis
[Ref.: #25037]	tyrosine ChEBI	-	hydrolysis
[Ref.: #25037]	urea ChEBI	-	hydrolysis
[Ref.: #25037]	xanthine ChEBI	+	hydrolysis
[Ref.: #25037]	xylitol ChEBI	-	carbon source
[Ref.: #25037]	xylitol ChEBI	-	energy source
[Ref.: #25037]	xylitol ChEBI	-	builds acid from
[Ref.: #25037]	xylose ChEBI	-	growth
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration
[Ref.: #25037]	ampicillin ChEBI	no	10	µg (disc)
[Ref.: #25037]	bacitracin ChEBI	no	0.04	µg (disc)
[Ref.: #25037]	chloramphenicol ChEBI	yes	30	µg (disc)
[Ref.: #25037]	clindamycin ChEBI	no	2	µg (disc)
[Ref.: #25037]	erythromycin ChEBI	yes	15	µg (disc)
[Ref.: #25037]	gentamicin ChEBI	yes	10	µg (disc)
[Ref.: #25037]	kanamycin ChEBI	yes	30	µg (disc)
[Ref.: #25037]	neomycin ChEBI	yes	30	µg (disc)
[Ref.: #25037]	novobiocin ChEBI	yes	30	µg (disc)
[Ref.: #25037]	nystatin ChEBI	no	100	µg (disc)
[Ref.: #25037]	penicillin ChEBI	no	100	Unit (disc)
[Ref.: #25037]	rifampicin ChEBI	yes	5	µg (disc)
[Ref.: #25037]	streptomycin ChEBI	yes	10	µg (disc)
[Ref.: #25037]	tetracycline ChEBI	yes	30	µg (disc)
[Ref.: #25037]	vancomycin ChEBI	no	30	µg (disc)
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #25037]		acetoin ChEBI	no
[Ref.: #25037]		indole ChEBI	no

	Metabolite	Voges-Proskauer-test	Methylred-test	Indole test
[Ref.: #25037]	acetoin ChEBI	-
[Ref.: #25037]	glucose ChEBI		-
[Ref.: #25037]	indole ChEBI			-

	Enzyme	Enzyme activity	EC number
[Ref.: #25037]	acid phosphatase	-	3.1.3.2
[Ref.: #25037]	alkaline phosphatase	-	3.1.3.1
[Ref.: #25037]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #25037]	alpha-galactosidase	-	3.2.1.22
[Ref.: #25037]	alpha-glucosidase	+	3.2.1.20
[Ref.: #25037]	alpha-mannosidase	-	3.2.1.24
[Ref.: #25037]	arginine dihydrolase	-	3.5.3.6
[Ref.: #25037]	beta-D-fucosidase	-	3.2.1.38
[Ref.: #25037]	beta-galactosidase	-	3.2.1.23
[Ref.: #25037]	beta-glucosidase	-	3.2.1.21
[Ref.: #25037]	beta-glucuronidase	-	3.2.1.31
[Ref.: #25037]	catalase	+	1.11.1.6
[Ref.: #25037]	cystine arylamidase	-	3.4.11.3
[Ref.: #25037]	cytochrome oxidase	+	1.9.3.1
[Ref.: #25037]	esterase (C 4)	+
[Ref.: #25037]	esterase lipase (C 8)	+
[Ref.: #25037]	leucine arylamidase	+	3.4.11.1
[Ref.: #25037]	lipase (C 14)	-
[Ref.: #25037]	lysine decarboxylase	-	4.1.1.18
[Ref.: #25037]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #25037]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #25037]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #25037]	phenylalanine deaminase	+	4.3.1.5
[Ref.: #25037]	trypsin	-	3.4.21.4
[Ref.: #25037]	tryptophan deaminase	-	4.1.99.1
[Ref.: #25037]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #25037]	Sample type/isolated from	sediment sample
[Ref.: #25037]	Geographic location (country and/or sea, region)	Qinghai Lake
[Ref.: #25037]	Country	China
[Ref.: #25037]	Country ISO 3 Code	CHN
[Ref.: #25037]	Continent	Asia
[Ref.: #25037]	Geographic location	36.0000°/100.0000°
[Ref.: #25037]	Enrichment culture	modified saline agar medium
[Ref.: #25037]	Enrichment culture composition	5g peptone, 4g yeast extract, 10g maltose, 4g glucose, 68g NaCl, 60g MgCl2, 6g KCl, 25g MgSO4 and 20g agar/l distilled water, pH 9.0
[Ref.: #25037]	Enrichment culture duration	7 days
[Ref.: #25037]	Enrichment culture temperature	30 ̊C
[Ref.: #25037]	Isolation/enrichment procedure	standard dilution-plating technique
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Sediment
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #25037]	16S rRNA	KP259554		GenBank

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Halomonas lutescens CGMCC 1.15122	GCA_014640815	contig	GenBank	1602943 tax ID	*
[Ref.: #66792]	Halomonas lutescens strain CGMCC 1.15122	1602943.3	wgs	PATRIC	1602943 tax ID	*

[Ref.: #25037]

GC-content

61.5 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Halomonas lutescens strain CGMCC 1.15122 PATRIC: 1602943.3
[Ref.: #69480]	motile	yes	89.07	yes
[Ref.: #69480]	gram-positive	no	98.658	yes
[Ref.: #69480]	anaerobic	no	98.391	yes
[Ref.: #69480]	aerobic	yes	92.168	no
[Ref.: #69480]	halophile	yes	91.66	yes
[Ref.: #69480]	spore-forming	no	95.156	no
[Ref.: #69480]	thermophile	no	99.422	yes
[Ref.: #69480]	glucose-util	yes	92.395	yes
[Ref.: #69480]	flagellated	yes	70.321	yes
[Ref.: #69480]	glucose-ferment	no	77.963	no

Availability in culture collections External links

[Ref.: #25037]

Culture collection no.

CGMCC 1.15122, KCTC 42517

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Halomonas lutescens sp. nov., a halophilic bacterium isolated from a lake sediment.	Wang T, Wei X, Xin Y, Zhuang J, Shan S, Zhang J	Int J Syst Evol Microbiol	10.1099/ijsem.0.001413	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#25037

T. W. Wang, X.,Xin, Y.,Zhuang, J.,Shan, S.,Zhang, J.: Halomonas lutescens sp. nov., a halophilic bacterium isolated from a lake sediment. IJSEM 66: 4697 - 4704 2016 ( DOI 10.1099/ijsem.0.001413 , PubMed 27514670 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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Halomonas lutescens strain CGMCC 1.15122

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