Litorisediminivivens gilvus (YSM-17, KCTC 52249, NBRC 112330)

Name: Litorisediminivivens gilvus (YSM-17, KCTC 52249, NBRC 112330)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133224

Type strain

Strain Designation YSM-17

Culture col. no. YSM-17 KCTC 52249 NBRC 112330

NCBI tax ID(s) 1849019

Special Collections KCTC Literature strains

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Litorisediminivivens gilvus YSM-17 is an aerobe, Gram-negative, coccus-shaped bacterium that forms circular colonies and was isolated from tidal flat sediment.

Gram-negative coccus-shaped colony-forming aerobe 16S sequence Bacteria

Name and taxonomic classification

SI-ID 27781

KCTC 52249,NBRC 112330

@ref 20215

Last LPSN update 2026-02-09 11:31:54

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Rhodobacterales

Family Roseobacteraceae

Genus Litorisediminivivens

Species Litorisediminivivens gilvus

Full scientific name Litorisediminivivens gilvus Park et al. 2016

Morphology

Cell morphology

@ref	Cell length	Cell width	Cell shape	Gram stain
25031			coccus-shaped	negative
25031			rod-shaped
25031	0.5-3.5 µm	0.3-0.8 µm	ovoid-shaped

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
25031	0.5-1.0 mm	pale yellow	circular	5 days	MA

Culture and growth conditions

Culture medium

@ref	Name	Growth
25031	Marine agar (MA)

Culture temp

@ref	Growth	Type	Temperature (°C)
25031	positive	growth	10-35
25031	positive	optimum	30
25031	negative	growth	4
25031	negative	growth	37

Culture pH

@ref	Ability	Type	PH
25031	positive	optimum	6.5-8.0
25031	positive	growth	5.5
25031		growth	5

Physiology and metabolism

Oxygen tolerance

25031

Oxygen toleranceaerobe

Halophily

@ref	Salt	Growth	Tested relation	Concentration
25031	NaCl	positive	growth	0.5-8.0 %(w/v)
25031	NaCl		optimum	2.0-3.0 %(w/v)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
25031	30089 ChEBI	acetate	+	carbon source
25031	30089 ChEBI	acetate	+	energy source
25031	16150 ChEBI	benzoate	-	carbon source
25031	16150 ChEBI	benzoate	-	energy source
25031		casein	-	hydrolysis
25031	17057 ChEBI	cellobiose	+	carbon source
25031	17057 ChEBI	cellobiose	+	energy source
25031	16947 ChEBI	citrate	+	carbon source
25031	16947 ChEBI	citrate	+	energy source
25031	15824 ChEBI	D-fructose	+	carbon source
25031	15824 ChEBI	D-fructose	+	energy source
25031	12936 ChEBI	D-galactose	+	carbon source
25031	12936 ChEBI	D-galactose	+	energy source
25031	17634 ChEBI	D-glucose	+	carbon source
25031	17634 ChEBI	D-glucose	+	energy source
25031	16024 ChEBI	D-mannose	+	carbon source
25031	16024 ChEBI	D-mannose	+	energy source
25031	65327 ChEBI	D-xylose	-	carbon source
25031	65327 ChEBI	D-xylose	-	energy source
25031	4853 ChEBI	esculin	+	hydrolysis
25031	15740 ChEBI	formate	-	carbon source
25031	15740 ChEBI	formate	-	energy source
25031	5291 ChEBI	gelatin	-	hydrolysis
25031	17368 ChEBI	hypoxanthine	+	hydrolysis
25031	30849 ChEBI	L-arabinose	-	carbon source
25031	30849 ChEBI	L-arabinose	-	energy source
25031	29985 ChEBI	L-glutamate	-	carbon source
25031	29985 ChEBI	L-glutamate	-	energy source
25031	15589 ChEBI	L-malate	-	carbon source
25031	15589 ChEBI	L-malate	-	energy source
25031	17895 ChEBI	L-tyrosine	+	hydrolysis
25031	17306 ChEBI	maltose	-	carbon source
25031	17306 ChEBI	maltose	-	energy source
25031	17632 ChEBI	nitrate	-	reduction
25031	15361 ChEBI	pyruvate	+	carbon source
25031	15361 ChEBI	pyruvate	+	energy source
25031	17814 ChEBI	salicin	-	carbon source
25031	17814 ChEBI	salicin	-	energy source
25031	28017 ChEBI	starch	-	hydrolysis
25031	30031 ChEBI	succinate	-	carbon source
25031	30031 ChEBI	succinate	-	energy source
25031	17992 ChEBI	sucrose	+	carbon source
25031	17992 ChEBI	sucrose	+	energy source
25031	27082 ChEBI	trehalose	-	carbon source
25031	27082 ChEBI	trehalose	-	energy source
25031	53426 ChEBI	tween 80	-	hydrolysis
25031	16199 ChEBI	urea	-	hydrolysis
25031	15318 ChEBI	xanthine	+	hydrolysis

Antibiotic resistance

@ref	ChEBI	Metabolite
25031	28971	ampicillin
25031	3393	carbenicillin
25031	124991	cefalotin
25031	17698	chloramphenicol
25031	17833	gentamicin
25031	6104	kanamycin
25031	6472	lincomycin
25031	7507	neomycin
25031	28368	novobiocin
25031	16869	oleandomycin
25031	18208	penicillin g
25031	8309	polymyxin b
25031	17076	streptomycin
25031	27902	tetracycline

Enzymes

@ref	Value	Activity	Ec
25031	acid phosphatase	-	3.1.3.2
25031	alkaline phosphatase	+	3.1.3.1
25031	alpha-chymotrypsin	-	3.4.21.1
25031	alpha-fucosidase	-	3.2.1.51
25031	alpha-galactosidase	-	3.2.1.22
25031	alpha-glucosidase	+	3.2.1.20
25031	alpha-mannosidase	-	3.2.1.24
25031	beta-galactosidase	-	3.2.1.23
25031	beta-glucosidase	-	3.2.1.21
25031	beta-glucuronidase	-	3.2.1.31
25031	catalase	+	1.11.1.6
25031	cystine arylamidase	-	3.4.11.3
25031	cytochrome oxidase	+	1.9.3.1
25031	esterase (C 4)	+
25031	esterase lipase (C 8)	+
25031	leucine arylamidase	+	3.4.11.1
25031	lipase (C 14)	-
25031	N-acetyl-beta-glucosaminidase	-	3.2.1.52
25031	naphthol-AS-BI-phosphohydrolase	-
25031	trypsin	-	3.4.21.4
25031	valine arylamidase	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Tidal flat
#Environmental	#Terrestrial	#Sediment

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Enrichment culture	Enrichment culture temperature	Isolation procedure
25031	tidal flat sediment	Yeosu on the South Sea	Republic of Korea	KOR	Asia	marine agar 2216 (MA; BD Difco)	25	standard dilution plating technique

Interaction and safety

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
25031	Litorisediminivivens gilvus strain YSM-17 16S ribosomal RNA gene, partial sequence	KX073750	1390		1849019

GC content

@ref	GC-content (mol%)	Method
25031	64.56-64.64	high performance liquid chromatography (HPLC)

Genome-based predictions

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#25031	S. H. Park, M. J.,Jung, Y. T.,Yoon, J. H.: Litorisediminivivens gilvus gen. nov., sp. nov., isolated from a tidal flat. IJSEM 66: 4681 - 4685 2016 ( DOI 10.1099/ijsem.0.001410 , PubMed 27506824 )
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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