Name: Chelatococcus reniformis B2974
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133219

Type strain:

Species: Chelatococcus reniformis

Strain Designation: B2974

Culture col. no.: DSM 105737, JCM 30308, CGMCC 1.12919

Strain history: Y. Liu; Inst. of Tibetan Plateau Res., CAS, China; B2974.

NCBI tax ID(s): 1494448 (species)

SI-ID 397983

DSM 105737

Other strains from Chelatococcus reniformis

C. reniformis

Section

Chelatococcus reniformis B2974 is an aerobe, Gram-negative, other bacterium that was isolated from ice core of glacier.

Gram-negative
other
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Chelatococcaceae*
	Genus	*Chelatococcus*
	Species	**Chelatococcus reniformis**
	Full Scientific Name (LPSN)	Chelatococcus reniformis Gu et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #25011]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.971

[Ref.: #25011]	Cell length	1.3-1.9 µm

[Ref.: #25011]	Cell width	0.3-0.8 µm

[Ref.: #25011]	Cell shape	other

[Ref.: #25011]	Motility	no

[Ref.: #25011]	Colony color	white
[Ref.: #25011]	Incubation period	4-5 days
[Ref.: #25011]	Cultivation medium used	R2A agar

Multimedia content

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #25011]

Culture medium

Reasoner's 2A agar (R2A)

[Ref.: #25011]

Culture medium growth

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Culture medium

R2A MEDIUM (DSMZ Medium 830)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

		Temperature
[Ref.: #25011]	growth	5-40 °C
[Ref.: #25011]	optimum	25-30 °C
[Ref.: #42853]	growth	28 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #25011]	Temperature range	mesophilic
[Ref.: #42853]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #25011]			optimum	7
[Ref.: #25011]			growth	5.0-10.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #25011]

Oxygen tolerance

aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %95
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.987

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #25011]		NaCl		growth	0-2.0	%
[Ref.: #25011]		NaCl		optimum	1	%

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Observation

quinones: Q-10

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #25011]	adipate ChEBI	-	assimilation
[Ref.: #25011]	citrate ChEBI	-	assimilation
[Ref.: #25011]	D-glucose ChEBI	-	assimilation
[Ref.: #25011]	decanoate ChEBI	-	assimilation
[Ref.: #25011]	esculin ChEBI	+	hydrolysis
[Ref.: #25011]	gelatin ChEBI	-	hydrolysis
[Ref.: #25011]	gluconate ChEBI	+	assimilation
[Ref.: #25011]	glucose ChEBI	-	fermentation
[Ref.: #25011]	glucose ChEBI	-	builds acid from
[Ref.: #25011]	L-arabinose ChEBI	-	assimilation
[Ref.: #25011]	malate ChEBI	-	assimilation
[Ref.: #25011]	maltose ChEBI	-	assimilation
[Ref.: #25011]	mannitol ChEBI	-	assimilation
[Ref.: #25011]	mannose ChEBI	-	assimilation
[Ref.: #25011]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #25011]	nitrate ChEBI	-	reduction
[Ref.: #25011]	phenylacetate ChEBI	-	assimilation
[Ref.: #25011]	tryptophan ChEBI	-	energy source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #25011]		acetoin ChEBI	no
[Ref.: #25011]		indole ChEBI	no

	Metabolite	Voges-Proskauer-test	Methylred-test	Indole test
[Ref.: #25011]	acetoin ChEBI	-
[Ref.: #25011]	glucose ChEBI		-
[Ref.: #25011]	indole ChEBI			-

	Enzyme	Enzyme activity	EC number
[Ref.: #25011]	acid phosphatase	+	3.1.3.2
[Ref.: #25011]	alkaline phosphatase	+	3.1.3.1
[Ref.: #25011]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #25011]	alpha-fucosidase	+	3.2.1.51
[Ref.: #25011]	alpha-galactosidase	-	3.2.1.22
[Ref.: #25011]	alpha-glucosidase	+	3.2.1.20
[Ref.: #25011]	alpha-mannosidase	+	3.2.1.24
[Ref.: #25011]	arginine dihydrolase	-	3.5.3.6
[Ref.: #25011]	beta-galactosidase	-	3.2.1.23
[Ref.: #25011]	beta-glucosidase	+	3.2.1.21
[Ref.: #25011]	beta-glucuronidase	-	3.2.1.31
[Ref.: #25011]	catalase	+	1.11.1.6
[Ref.: #25011]	cystine arylamidase	-	3.4.11.3
[Ref.: #25011]	cytochrome oxidase	+	1.9.3.1
[Ref.: #25011]	esterase (C 4)	+
[Ref.: #25011]	esterase lipase (C 8)	+
[Ref.: #25011]	leucine arylamidase	+	3.4.11.1
[Ref.: #25011]	lipase (C 14)	-
[Ref.: #25011]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #25011]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #25011]	trypsin	-	3.4.21.4
[Ref.: #25011]	tryptophan deaminase	-	4.1.99.1
[Ref.: #25011]	urease	+	3.5.1.5
[Ref.: #25011]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #25011]	Sample type/isolated from	ice core of glacier
[Ref.: #25011]	Geographic location (country and/or sea, region)	Muztagh Glacier, Tibetan Plateau
[Ref.: #25011]	Country	China
[Ref.: #25011]	Country ISO 3 Code	CHN
[Ref.: #25011]	Continent	Asia

[Ref.: #42853]	Sample type/isolated from	ice core of glacier
[Ref.: #42853]	Geographic location (country and/or sea, region)	Muztagh glacier, Tibetan Plateau
[Ref.: #42853]	Country	China
[Ref.: #42853]	Country ISO 3 Code	CHN
[Ref.: #42853]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Ice core of the Muztagh Glacier
[Ref.: #67770]	Geographic location (country and/or sea, region)	Tibetan Plateau
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Ice
#Environmental	#Terrestrial	#Core sample

What are isolation sources categories?

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Global distribution of 16S sequence KJ469373 (>99% sequence identity) for Chelatococcus reniformis subclade from Microbeatlas

Aquatic Samples	89
Soil Samples	411
Animal Samples	240
Plant Samples	47
Total Samples	787

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

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Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #42853]	Chelatococcus reniformis strain B2974 16S ribosomal RNA gene, partial sequence	KJ469373	1449	ENA	1494448 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Chelatococcus reniformis CGMCC 1.12919	GCA_014640075	scaffold	GenBank	1494448 tax ID	*
[Ref.: #66792]	Chelatococcus reniformis strain CGMCC 1.12919	1494448.3	wgs	PATRIC	1494448 tax ID	*

[Ref.: #67770]

GC-content

64 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Chelatococcus reniformis CGMCC 1.12919 NCBI: GCA_014640075.1
[Ref.: #69481]	spore-forming	no	95	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Chelatococcus reniformis CGMCC 1.12919 NCBI: GCA_014640075.1
[Ref.: #69480]	flagellated	no	95.089	yes
[Ref.: #69480]	gram-positive	no	97.372	yes
[Ref.: #69480]	anaerobic	no	98.606	no
[Ref.: #69480]	aerobic	yes	95.551	yes
[Ref.: #69480]	halophile	no	93.199	no
[Ref.: #69480]	spore-forming	no	93.234	no
[Ref.: #69480]	glucose-util	yes	80.623	no
[Ref.: #69480]	thermophile	no	98.564	no
[Ref.: #69480]	motile	no	85.913	yes
[Ref.: #69480]	glucose-ferment	no	93.442	yes

Availability in culture collections External links

[Ref.: #42853]

Culture collection no.

DSM 105737, JCM 30308, CGMCC 1.12919

[Ref.: #91396]

SI-ID 397983

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Chelatococcus reniformis sp. nov., isolated from a glacier.	Gu Z, Liu Y, Wang N, Jiao N, Shen L, Liu H, Zhou Y, Liu X, Li J, Liang J, Busse HJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.001384	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#25011

Z. L. Gu, Y.,Wang, N.,Jiao, N.,Shen, L.,Liu, H.,Zhou, Y.,Liu, X.,Li, J.,Liang, J.,Busse, H. J.: Chelatococcus reniformis sp. nov., isolated from a glacier. IJSEM 66: 4525 - 4529 2016 ( DOI 10.1099/ijsem.0.001384 , PubMed 27503219 )

#42853

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 105737

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#91396

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID397983.1 )

* These data were automatically processed and therefore are not curated

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Chelatococcus reniformis CGMCC 1.12919

Chelatococcus reniformis CGMCC 1.12919

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