Name: Rhizobium favelukesii LPU83
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133217

Type strain:

Species: Rhizobium favelukesii

Strain Designation: LPU83

Culture col. no.: CECT 9014, LMG 29160

Strain history: 2015, GA. Torres Tejerizo, IBBM, Buenos Aires, Argentina: strain LPU83

NCBI tax ID(s): 348824 (species)

Other strains from Rhizobium favelukesii

R. favelukesii LPU83, CIP 110924 (type strain)

Section

Rhizobium favelukesii LPU83 is an aerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from alfalfa root nodule, plant-trap experiment inoculated with soil.

colony-forming
Gram-negative
rod-shaped
aerobe
mesophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Rhizobiaceae*
	Genus	*Rhizobium*
	Species	**Rhizobium favelukesii**
	Full Scientific Name (LPSN)	Rhizobium favelukesii Torres Tejerizo et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #25035]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.992

[Ref.: #25035]	Cell shape	rod-shaped

[Ref.: #25035]	Motility	no

[Ref.: #25035]	Colony color	pearly
[Ref.: #25035]	Colony shape	circular
[Ref.: #25035]	Incubation period	3 days
[Ref.: #25035]	Cultivation medium used	PY-agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #25035]

Culture medium

PY-agar

[Ref.: #25035]

Culture medium growth

[Ref.: #41898]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #41898]

Culture medium growth

[Ref.: #41898]

Culture medium composition

expand / minimize

	Kind of temperature		Temperature
[Ref.: #25035]		optimum	28 °C
[Ref.: #25035]	inconsistent	growth	37 °C
[Ref.: #41898]		growth	30 °C

[Ref.: #25035]	Temperature range	mesophilic
[Ref.: #41898]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #25035]			optimum	7
[Ref.: #25035]			growth	4.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #25035]

Oxygen tolerance

aerobe

[Ref.: #25035]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.999

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #25035]	(S)-lactate ChEBI	+	carbon source
[Ref.: #25035]	acetate ChEBI	+	carbon source
[Ref.: #25035]	alpha-D-glucose ChEBI	+	carbon source
[Ref.: #25035]	alpha-lactose ChEBI	+	carbon source
[Ref.: #25035]	bromosuccinate ChEBI	+	carbon source
[Ref.: #25035]	citrate ChEBI	+	carbon source
[Ref.: #25035]	D-fructose ChEBI	+	carbon source
[Ref.: #25035]	D-galactose ChEBI	+	carbon source
[Ref.: #25035]	D-gluconate ChEBI	+	carbon source
[Ref.: #25035]	D-glucosaminic acid ChEBI	+	carbon source
[Ref.: #25035]	D-glucuronate ChEBI	+	carbon source
[Ref.: #25035]	D-malate ChEBI	+	carbon source
[Ref.: #25035]	D-mannitol ChEBI	+	carbon source
[Ref.: #25035]	D-mannose ChEBI	+	carbon source
[Ref.: #25035]	D-psicose ChEBI	+	carbon source
[Ref.: #25035]	D-serine ChEBI	-	carbon source
[Ref.: #25035]	D-trehalose ChEBI	+	carbon source
[Ref.: #25035]	ethanolamine ChEBI	-	carbon source
[Ref.: #25035]	formate ChEBI	+	carbon source
[Ref.: #25035]	fumarate ChEBI	+	carbon source
[Ref.: #25035]	galactitol ChEBI	-	carbon source
[Ref.: #25035]	glycerol ChEBI	+	carbon source
[Ref.: #25035]	glycyl-l-glutamate ChEBI	+	carbon source
[Ref.: #25035]	L-alanine ChEBI	+	carbon source
[Ref.: #25035]	L-alanylglycine ChEBI	+	carbon source
[Ref.: #25035]	L-arabinose ChEBI	-	carbon source
[Ref.: #25035]	L-aspartate ChEBI	+	carbon source
[Ref.: #25035]	L-galactonic acid gamma-lactone ChEBI	+	carbon source
[Ref.: #25035]	L-glutamine ChEBI	+	carbon source
[Ref.: #25035]	L-malate ChEBI	-	carbon source
[Ref.: #25035]	L-proline ChEBI	+	carbon source
[Ref.: #25035]	L-threonine ChEBI	+	carbon source
[Ref.: #25035]	maltotriose ChEBI	+	carbon source
[Ref.: #25035]	monomethyl succinate ChEBI	+	carbon source
[Ref.: #25035]	myo-inositol ChEBI	+	carbon source
[Ref.: #25035]	phenylethylamine ChEBI	-	carbon source
[Ref.: #25035]	pyruvate ChEBI	+	carbon source
[Ref.: #25035]	succinate ChEBI	+	carbon source
[Ref.: #25035]	uridine ChEBI	-	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Metabolite	Antibiotic resistance	Concentration
[Ref.: #25035]		tetracycline ChEBI	yes	5	µg/mL

	Enzyme	Enzyme activity	EC number
[Ref.: #25035]	beta-galactosidase	+	3.2.1.23
[Ref.: #25035]	catalase	+	1.11.1.6
[Ref.: #25035]	cytochrome oxidase	+	1.9.3.1
[Ref.: #25035]	nitrate reductase	+	1.7.99.4
[Ref.: #25035]	urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #25035]	Sample type/isolated from	alfalfa (Medicago sativa) root nodule, plant-trap experiment inoculated with soil
[Ref.: #25035]	Geographic location (country and/or sea, region)	Castelar, Buenos Aires
[Ref.: #25035]	Country	Argentina
[Ref.: #25035]	Country ISO 3 Code	ARG
[Ref.: #25035]	Continent	Middle and South America
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root nodule

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Rhizobium favelukesii LPU83	GCA_000577275	chromosome	GenBank	348824 tax ID	*
[Ref.: #66792]	Rhizobium favelukesii LPU83	2740891995	complete	JGI IMG/M	348824 tax ID	*

[Ref.: #25035]

GC-content

59.65 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Rhizobium favelukesii LPU83 NCBI: GCA_000577275.2
[Ref.: #69481]	spore-forming	no	100	no

Availability in culture collections External links

[Ref.: #25035]

Culture collection no.

CECT 9014, LMG 29160

Literature:

Only first 10 entries are displayed. Click here to see all.

	Title	Authors	Journal	DOI	Year
Stress	ubiF is involved in acid stress tolerance and symbiotic competitiveness in Rhizobium favelukesii LPU83.	Martini MC, Vacca C, Torres Tejerizo GA, Draghi WO, Pistorio M, Lozano MJ, Lagares A, Del Papa MF	Braz J Microbiol	10.1007/s42770-022-00780-8	2022	*
Transcriptome	Global transcriptome analysis of Rhizobium favelukesii LPU83 in response to acid stress.	Nilsson JF, Castellani LG, Draghi WO, Mogro EG, Wibberg D, Winkler A, Hansen LH, Schluter A, Puhler A, Kalinowski J, Torres Tejerizo GA, Pistorio M	FEMS Microbiol Ecol	10.1093/femsec/fiaa235	2020	*
Stress	Proteomic Analysis of Rhizobium favelukesii LPU83 in Response to Acid Stress.	Nilsson JF, Castellani LG, Draghi WO, Perez-Gimenez J, Torres Tejerizo GA, Pistorio M	J Proteome Res	10.1021/acs.jproteome.9b00275	2019	*
Metabolism	Insight into the structure, function and conjugative transfer of pLPU83a, an accessory plasmid of Rhizobium favelukesii LPU83.	Castellani LG, Nilsson JF, Wibberg D, Schluter A, Puhler A, Brom S, Pistorio M, Torres Tejerizo G	Plasmid	10.1016/j.plasmid.2019.03.004	2019	*
Phylogeny	Rhizobium favelukesii sp. nov., isolated from the root nodules of alfalfa (Medicago sativa L).	Torres Tejerizo G, Rogel MA, Ormeno-Orrillo E, Althabegoiti MJ, Nilsson JF, Niehaus K, Schluter A, Puhler A, Del Papa MF, Lagares A, Martinez-Romero E, Pistorio M	Int J Syst Evol Microbiol	10.1099/ijsem.0.001373	2016	*
	Exopolysaccharide Characterization of Rhizobium favelukesii LPU83 and Its Role in the Symbiosis With Alfalfa.	Castellani LG, Luchetti A, Nilsson JF, Perez-Gimenez J, Wegener C, Schluter A, Puhler A, Lagares A, Brom S, Pistorio M, Niehaus K, Torres Tejerizo GA	Front Plant Sci	10.3389/fpls.2021.642576	2021	*
	RcgA and RcgR, Two Novel Proteins Involved in the Conjugative Transfer of Rhizobial Plasmids.	Castellani LG, Luchetti A, Nilsson JF, Perez-Gimenez J, Struck B, Schluter A, Puhler A, Niehaus K, Romero D, Pistorio M, Torres Tejerizo G	mBio	10.1128/mbio.01949-22	2022	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#25035

G. R. Torres Tejerizo, M. A.,Ormeño-Orrillo, E.,Althabegoiti, M. J.,Nilsson, J. F.,Niehaus, K.,Schlüter, A.,Pühler, A.,Del Papa, M. F.,Lagares, A.,Martínez-Romero, E.,Pistorio, M.: Rhizobium favelukesii sp. nov., isolated from the root nodules of alfalfa (Medicago sativa L). IJSEM 66: 4451 - 4457 2016 ( DOI 10.1099/ijsem.0.001373 , PubMed 27499008 )

#41898 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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