Name: Pseudoalteromonas gelatinilytica TP162
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 133216

Type strain:

Species: Pseudoalteromonas gelatinilytica

Strain Designation: TP162

Culture col. no.: KACC 18554, CGMCC 1.15394

NCBI tax ID(s): 1703256 (species)

Special Collections

Literature strains

Other strains from Pseudoalteromonas gelatinilytica

Section

When using BacDive for research please cite our paper

Pseudoalteromonas gelatinilytica TP162 is an aerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from surface of a black stone; with brittle stars, which was collected from a seamount.

colony-forming
Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Pseudoalteromonadaceae*
	Genus	*Pseudoalteromonas*
	Species	**Pseudoalteromonas gelatinilytica**
	Full Scientific Name (LPSN)	Pseudoalteromonas gelatinilytica Yan et al. 2016

Synonym

Pseudoalteromonas profundi

Information on morphological and physiological properties Morphology

[Ref.: #25045]	Gram stain	negative
[Ref.: #125439]	Gram stain	negative Confidence in %99.7
[Ref.: #125438]	Gram stain	negative Confidence in %98

[Ref.: #25045]	Cell length	1.1-2.8 µm

[Ref.: #25045]	Cell width	0.4-0.7 µm

[Ref.: #25045]	Cell shape	rod-shaped

[Ref.: #25045]	Motility	yes

[Ref.: #25045]	Flagellum arrangement	polar

[Ref.: #25045]	Colony size	1.0-1.5 mm
[Ref.: #25045]	Colony shape	circular
[Ref.: #25045]	Incubation period	2 days
[Ref.: #25045]	Cultivation medium used	MA agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #25045]

Culture medium

MA agar

[Ref.: #25045]

Culture medium growth

	Kind of temperature		Temperature
[Ref.: #25045]		growth	10-40 °C
[Ref.: #25045]	negative	growth	5 °C
[Ref.: #25045]	negative	growth	45 °C
[Ref.: #25045]		optimum	27-30 °C

	pH	Kind of pH		pH
[Ref.: #25045]			optimum	6.5-8.0
[Ref.: #25045]			growth	6.0-9.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #25045]	Oxygen tolerance	aerobe
[Ref.: #125439]	Oxygen tolerance	obligate aerobe Confidence in %98.2

[Ref.: #125439]

Ability of spore formation

no Confidence in %99.4

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #25045]		NaCl		growth	0.5-9.0	%(w/v)
[Ref.: #25045]		NaCl		optimum	3.0-4.0	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #25045]	amygdalin ChEBI	-	energy source
[Ref.: #25045]	amygdalin ChEBI	-	carbon source
[Ref.: #25045]	amygdalin ChEBI	-	assimilation
[Ref.: #25045]	casein	+	hydrolysis
[Ref.: #25045]	cellobiose ChEBI	-	builds acid from
[Ref.: #25045]	D-arabinose ChEBI	+	energy source
[Ref.: #25045]	D-arabinose ChEBI	+	carbon source
[Ref.: #25045]	D-arabinose ChEBI	+	builds acid from
[Ref.: #25045]	D-arabinose ChEBI	+	assimilation
[Ref.: #25045]	D-galactose ChEBI	-	energy source
[Ref.: #25045]	D-galactose ChEBI	-	carbon source
[Ref.: #25045]	D-glucose ChEBI	+	energy source
[Ref.: #25045]	D-glucose ChEBI	+	carbon source
[Ref.: #25045]	D-mannitol ChEBI	+	energy source
[Ref.: #25045]	D-mannitol ChEBI	+	carbon source
[Ref.: #25045]	decanoate ChEBI	-	energy source
[Ref.: #25045]	decanoate ChEBI	-	carbon source
[Ref.: #25045]	dna ChEBI	+	hydrolysis
[Ref.: #25045]	esculin ChEBI	+	hydrolysis
[Ref.: #25045]	fructose ChEBI	+	builds acid from
[Ref.: #25045]	galactose ChEBI	-	builds acid from
[Ref.: #25045]	gelatin ChEBI	+	hydrolysis
[Ref.: #25045]	glucose ChEBI	+	builds acid from
[Ref.: #25045]	lactose ChEBI	-	energy source
[Ref.: #25045]	lactose ChEBI	-	carbon source
[Ref.: #25045]	lactose ChEBI	-	builds acid from
[Ref.: #25045]	malate ChEBI	-	energy source
[Ref.: #25045]	malate ChEBI	-	carbon source
[Ref.: #25045]	malate ChEBI	-	assimilation
[Ref.: #25045]	maltose ChEBI	+	energy source
[Ref.: #25045]	maltose ChEBI	+	carbon source
[Ref.: #25045]	maltose ChEBI	+	builds acid from
[Ref.: #25045]	mannitol ChEBI	+	builds acid from
[Ref.: #25045]	mannitol ChEBI	+	assimilation
[Ref.: #25045]	mannose ChEBI	+	builds acid from
[Ref.: #25045]	melezitose ChEBI	-	energy source
[Ref.: #25045]	melezitose ChEBI	-	carbon source
[Ref.: #25045]	melezitose ChEBI	-	builds acid from
[Ref.: #25045]	melibiose ChEBI	-	energy source
[Ref.: #25045]	melibiose ChEBI	-	carbon source
[Ref.: #25045]	myo-inositol ChEBI	-	energy source
[Ref.: #25045]	myo-inositol ChEBI	-	carbon source
[Ref.: #25045]	myo-inositol ChEBI	-	builds acid from
[Ref.: #25045]	N-acetylglucosamine ChEBI	+	energy source
[Ref.: #25045]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #25045]	nitrate ChEBI	-	reduction
[Ref.: #25045]	phenylacetate ChEBI	-	energy source
[Ref.: #25045]	phenylacetate ChEBI	-	carbon source
[Ref.: #25045]	potassium gluconate ChEBI	+	energy source
[Ref.: #25045]	potassium gluconate ChEBI	+	carbon source
[Ref.: #25045]	potassium gluconate ChEBI	+	assimilation
[Ref.: #25045]	raffinose ChEBI	-	energy source
[Ref.: #25045]	raffinose ChEBI	-	carbon source
[Ref.: #25045]	raffinose ChEBI	-	builds acid from
[Ref.: #25045]	rhamnose ChEBI	-	energy source
[Ref.: #25045]	rhamnose ChEBI	-	carbon source
[Ref.: #25045]	rhamnose ChEBI	-	builds acid from
[Ref.: #25045]	ribose ChEBI	-	energy source
[Ref.: #25045]	ribose ChEBI	-	carbon source
[Ref.: #25045]	ribose ChEBI	-	builds acid from
[Ref.: #25045]	salicin ChEBI	-	builds acid from
[Ref.: #25045]	sodium chloride ChEBI	+	required for growth
[Ref.: #25045]	sodium citrate ChEBI	+	energy source
[Ref.: #25045]	sodium citrate ChEBI	+	carbon source
[Ref.: #25045]	sodium citrate ChEBI	+	assimilation
[Ref.: #25045]	sorbitol ChEBI	-	energy source
[Ref.: #25045]	sorbitol ChEBI	-	carbon source
[Ref.: #25045]	sorbitol ChEBI	-	builds acid from
[Ref.: #25045]	sorbitol ChEBI	-	assimilation
[Ref.: #25045]	sorbose ChEBI	-	builds acid from
[Ref.: #25045]	starch ChEBI	-	hydrolysis
[Ref.: #25045]	sucrose ChEBI	+	energy source
[Ref.: #25045]	sucrose ChEBI	+	carbon source
[Ref.: #25045]	sucrose ChEBI	+	builds acid from
[Ref.: #25045]	trehalose ChEBI	+	energy source
[Ref.: #25045]	trehalose ChEBI	+	carbon source
[Ref.: #25045]	trehalose ChEBI	+	builds acid from
[Ref.: #25045]	tryptophan ChEBI	-	energy source
[Ref.: #25045]	urea ChEBI	-	hydrolysis
[Ref.: #25045]	xylose ChEBI	-	energy source
[Ref.: #25045]	xylose ChEBI	-	carbon source
[Ref.: #25045]	xylose ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration
[Ref.: #25045]	amikacin ChEBI	yes	30	µg
[Ref.: #25045]	carbenicillin ChEBI	yes	100	µg
[Ref.: #25045]	cefoperazone ChEBI	yes	15	µg
[Ref.: #25045]	cephradine ChEBI	no	30	µg
[Ref.: #25045]	erythromycin ChEBI	yes	15	µg
[Ref.: #25045]	gentamicin ChEBI	yes	10	µg
[Ref.: #25045]	minocycline ChEBI	yes	30	µg
[Ref.: #25045]	neomycin ChEBI	yes	30	µg
[Ref.: #25045]	oxacillin ChEBI	no	1	µg
[Ref.: #25045]	piperacillin ChEBI	yes	100	µg

	Metabolite production	Metabolite	Production
[Ref.: #25045]		indole ChEBI	no

	Physiological tests	Metabolite	Indole test
[Ref.: #25045]		indole ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #25045]	6-phospho-beta-galactosidase	-	3.2.1.85
[Ref.: #25045]	acid phosphatase	+	3.1.3.2
[Ref.: #25045]	alkaline phosphatase	+	3.1.3.1
[Ref.: #25045]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #25045]	alpha-fucosidase	-	3.2.1.51
[Ref.: #25045]	alpha-galactosidase	-	3.2.1.22
[Ref.: #25045]	alpha-glucosidase	+	3.2.1.20
[Ref.: #25045]	alpha-mannosidase	+	3.2.1.24
[Ref.: #25045]	arginine dihydrolase	+	3.5.3.6
[Ref.: #25045]	arginine dihydrolase	-	3.5.3.6
[Ref.: #25045]	beta-glucosidase	-	3.2.1.21
[Ref.: #25045]	beta-glucuronidase	-	3.2.1.31
[Ref.: #25045]	catalase	+	1.11.1.6
[Ref.: #25045]	cystine arylamidase	+	3.4.11.3
[Ref.: #25045]	cytochrome oxidase	+	1.9.3.1
[Ref.: #25045]	esterase (C 4)	+
[Ref.: #25045]	esterase lipase (C 8)	+
[Ref.: #25045]	leucine arylamidase	+	3.4.11.1
[Ref.: #25045]	lipase (C 14)	-
[Ref.: #25045]	lysine decarboxylase	-	4.1.1.18
[Ref.: #25045]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #25045]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #25045]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #25045]	trypsin	+	3.4.21.4
[Ref.: #25045]	tryptophan deaminase	-	4.1.99.1
[Ref.: #25045]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #25045]	Sample type/isolated from	surface of a black stone with brittle stars, which was collected from a seamount
[Ref.: #25045]	Geographic location (country and/or sea, region)	Pacific Ocean, near the Yap Trench in the tropical western Pacific
[Ref.: #25045]	Geographic location	8.0000°/137.0000°
[Ref.: #25045]	Enrichment culture	marine agar 2216
[Ref.: #25045]	Enrichment culture duration	14 days
[Ref.: #25045]	Enrichment culture temperature	20 ̊C
[Ref.: #25045]	Isolation date	2014-12-13
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	-
#Environmental	#Terrestrial	-
#Host	#Invertebrates (Other)	#Echinodermata

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KT900238 (>99% sequence identity) for Pseudoalteromonas from Microbeatlas

Aquatic Samples	660
Soil Samples	4
Animal Samples	23
Plant Samples	4
Total Samples	691

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #25045]	Pseudoalteromonas profundi strain TP162 16S ribosomal RNA gene, partial sequence	KT900238	1543	GenBank ENA	1774956 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Pseudoalteromonas profundi CGMCC 1.15394	GCA_014642695	scaffold	GenBank ENA	1774956 tax ID	*
[Ref.: #66792]	Pseudoalteromonas profundi strain CGMCC 1.15394	1774956.4	wgs	PATRIC	1774956 tax ID	*

[Ref.: #25045]

GC-content

46.7 mol%

Thermal denaturation, fluorometry

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Pseudoalteromonas profundi CGMCC 1.15394 NCBI: GCA_014642695.1
[Ref.: #125438]	gram-positive	gram-positiveⓘ	no	98	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	94.748	no
[Ref.: #125438]	aerobic	aerobicⓘ	yes	73.739	yes
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	85.226	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	98	no
[Ref.: #125438]	motile2+	flagellatedⓘ	yes	89.649	yes

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Pseudoalteromonas profundi CGMCC 1.15394 NCBI: GCA_014642695
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	99.4
[Ref.: #125439]	BacteriaNet	motilityⓘ	yes	66.4
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	negative	99.7
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	obligate aerobe	98.2

Availability in culture collections External links

[Ref.: #25045]

Culture collection no.

KACC 18554, CGMCC 1.15394

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pseudoalteromonas profundi sp. nov., isolated from a deep-sea seamount.	Zhang DC, Liu YX, Huang HJ, Wu J	Int J Syst Evol Microbiol	10.1099/ijsem.0.001366	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#25045

D. C. L. Zhang, Y. X.,Huang, H. J.,Wu, J.: Pseudoalteromonas profundi sp. nov., isolated from a deep-sea seamount. IJSEM 66: 4416 - 4421 2016 ( DOI 10.1099/ijsem.0.001366 , PubMed 27493151 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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Pseudoalteromonas profundi CGMCC 1.15394

Pseudoalteromonas profundi CGMCC 1.15394

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