Name: Saccharibacillus qingshengii H6
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133208

Type strain:

Species: Saccharibacillus qingshengii

Strain Designation: H6

Culture col. no.: CCTCC AB 2016001, JCM 31172

Strain history: X. F. Sheng; Nanjing Agric. Univ., China; H6.

NCBI tax ID(s): 1763540 (species)

Section

Saccharibacillus qingshengii H6 is an aerobe, spore-forming, Gram-positive bacterium that forms circular colonies and was isolated from soil sample of lead-cadmium tailing.

colony-forming
Gram-positive
motile
rod-shaped
spore-forming
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Paenibacillaceae*
	Genus	*Saccharibacillus*
	Species	**Saccharibacillus qingshengii**
	Full Scientific Name (LPSN)	Saccharibacillus qingshengii Han et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #25013]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #25013]	Cell length	0.9-1.6 µm

[Ref.: #25013]	Cell width	0.5-0.6 µm

[Ref.: #25013]	Cell shape	rod-shaped

[Ref.: #25013]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %96.096

[Ref.: #25013]	Colony size	1.0-2.0 mm
[Ref.: #25013]	Colony color	red
[Ref.: #25013]	Colony shape	circular
[Ref.: #25013]	Cultivation medium used	LB agar medium

Information on culture and growth conditions Culture and growth conditions

[Ref.: #25013]

Culture medium

LB agar medium

[Ref.: #25013]

Culture medium growth

		Temperature
[Ref.: #25013]	growth	15-42 °C
[Ref.: #25013]	optimum	30 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #25013]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #25013]			optimum	7
[Ref.: #25013]			growth	5.0-10.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #25013]

Oxygen tolerance

aerobe

[Ref.: #25013]	Spore description	oval and subterminal and occur in unswollen sporangia
[Ref.: #25013]	Type of spore	spore
[Ref.: #25013]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %99.686

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #25013]		NaCl		growth	0-3.0	%
[Ref.: #25013]		NaCl	no	growth	5	%

[Ref.: #67770]

Observation

quinones: MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #25013]	2-dehydro-D-gluconate ChEBI	-	builds acid from
[Ref.: #25013]	5-dehydro-D-gluconate ChEBI	-	builds acid from
[Ref.: #25013]	amygdalin ChEBI	+	builds acid from
[Ref.: #25013]	arbutin ChEBI	+	builds acid from
[Ref.: #25013]	cellobiose ChEBI	+	builds acid from
[Ref.: #25013]	citrate ChEBI	+	carbon source
[Ref.: #25013]	D-arabinose ChEBI	+	builds acid from
[Ref.: #25013]	D-arabitol ChEBI	-	builds acid from
[Ref.: #25013]	D-fructose ChEBI	+	builds acid from
[Ref.: #25013]	D-fucose ChEBI	-	builds acid from
[Ref.: #25013]	D-galactose ChEBI	+	builds acid from
[Ref.: #25013]	D-lyxose ChEBI	-	builds acid from
[Ref.: #25013]	D-mannitol ChEBI	+	builds acid from
[Ref.: #25013]	D-mannose ChEBI	+	builds acid from
[Ref.: #25013]	D-ribose ChEBI	+	builds acid from
[Ref.: #25013]	D-sorbitol ChEBI	-	builds acid from
[Ref.: #25013]	D-tagatose ChEBI	-	builds acid from
[Ref.: #25013]	D-xylose ChEBI	+	builds acid from
[Ref.: #25013]	erythritol ChEBI	-	builds acid from
[Ref.: #25013]	esculin ChEBI	+	builds acid from
[Ref.: #25013]	galactitol ChEBI	-	builds acid from
[Ref.: #25013]	gelatin ChEBI	-	hydrolysis
[Ref.: #25013]	gentiobiose ChEBI	+	builds acid from
[Ref.: #25013]	glycerol ChEBI	+	builds acid from
[Ref.: #25013]	glycogen ChEBI	-	builds acid from
[Ref.: #25013]	inulin ChEBI	-	builds acid from
[Ref.: #25013]	L-arabinose ChEBI	+	builds acid from
[Ref.: #25013]	L-arabitol ChEBI	-	builds acid from
[Ref.: #25013]	L-fucose ChEBI	-	builds acid from
[Ref.: #25013]	L-rhamnose ChEBI	-	builds acid from
[Ref.: #25013]	L-sorbose ChEBI	+	builds acid from
[Ref.: #25013]	L-xylose ChEBI	-	builds acid from
[Ref.: #25013]	lactose ChEBI	+	builds acid from
[Ref.: #25013]	maltose ChEBI	+	builds acid from
[Ref.: #25013]	melezitose ChEBI	-	builds acid from
[Ref.: #25013]	melibiose ChEBI	+	builds acid from
[Ref.: #25013]	methyl alpha-D-glucopyranoside ChEBI	+	builds acid from
[Ref.: #25013]	methyl alpha-D-mannoside ChEBI	-	builds acid from
[Ref.: #25013]	methyl beta-D-xylopyranoside ChEBI	+	builds acid from
[Ref.: #25013]	myo-inositol ChEBI	+	builds acid from
[Ref.: #25013]	N-acetylglucosamine ChEBI	-	builds acid from
[Ref.: #25013]	potassium gluconate ChEBI	+	builds acid from
[Ref.: #25013]	raffinose ChEBI	+	builds acid from
[Ref.: #25013]	ribitol ChEBI	-	builds acid from
[Ref.: #25013]	salicin ChEBI	+	builds acid from
[Ref.: #25013]	starch ChEBI	+	builds acid from
[Ref.: #25013]	sucrose ChEBI	+	builds acid from
[Ref.: #25013]	trehalose ChEBI	+	builds acid from
[Ref.: #25013]	tryptophan ChEBI	+	energy source
[Ref.: #25013]	turanose ChEBI	-	builds acid from
[Ref.: #25013]	xylitol ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #25013]	amoxicillin ChEBI	yes
[Ref.: #25013]	ampicillin ChEBI		yes
[Ref.: #25013]	carbenicillin ChEBI		yes
[Ref.: #25013]	cefazolin ChEBI	yes
[Ref.: #25013]	ceftazidime ChEBI	yes
[Ref.: #25013]	chloramphenicol ChEBI	yes
[Ref.: #25013]	erythromycin ChEBI		yes
[Ref.: #25013]	gentamicin ChEBI	yes
[Ref.: #25013]	kanamycin ChEBI		yes
[Ref.: #25013]	ofloxacin ChEBI		yes
[Ref.: #25013]	penicillin g ChEBI	yes
[Ref.: #25013]	polymyxin b ChEBI	yes
[Ref.: #25013]	rifampicin ChEBI	yes
[Ref.: #25013]	streptomycin ChEBI		yes
[Ref.: #25013]	tetracycline ChEBI		yes
[Ref.: #25013]	vancomycin ChEBI	yes
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #25013]		indole ChEBI	yes

	Physiological tests	Metabolite	Indole test
[Ref.: #25013]		indole ChEBI	+

	Enzyme	Enzyme activity	EC number
[Ref.: #25013]	acid phosphatase	+	3.1.3.2
[Ref.: #25013]	alkaline phosphatase	+	3.1.3.1
[Ref.: #25013]	alpha-chymotrypsin	+	3.4.21.1
[Ref.: #25013]	alpha-galactosidase	+	3.2.1.22
[Ref.: #25013]	alpha-glucosidase	+	3.2.1.20
[Ref.: #25013]	alpha-mannosidase	-	3.2.1.24
[Ref.: #25013]	arginine dihydrolase	+	3.5.3.6
[Ref.: #25013]	beta-D-fucosidase	+	3.2.1.38
[Ref.: #25013]	beta-galactosidase	+	3.2.1.23
[Ref.: #25013]	beta-glucosidase	+	3.2.1.21
[Ref.: #25013]	beta-glucuronidase	-	3.2.1.31
[Ref.: #25013]	cystine arylamidase	-	3.4.11.3
[Ref.: #25013]	esterase (C 4)	+
[Ref.: #25013]	esterase lipase (C 8)	+
[Ref.: #25013]	leucine arylamidase	+	3.4.11.1
[Ref.: #25013]	lipase (C 14)	-
[Ref.: #25013]	lysine decarboxylase	+	4.1.1.18
[Ref.: #25013]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #25013]	ornithine decarboxylase	+	4.1.1.17
[Ref.: #25013]	trypsin	-	3.4.21.4
[Ref.: #25013]	tryptophan deaminase	+	4.1.99.1
[Ref.: #25013]	urease	+	3.5.1.5
[Ref.: #25013]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #25013]	Sample type/isolated from	soil sample of lead-cadmium tailing
[Ref.: #25013]	Geographic location (country and/or sea, region)	Qixia, Nanjing
[Ref.: #25013]	Country	China
[Ref.: #25013]	Country ISO 3 Code	CHN
[Ref.: #25013]	Continent	Asia
[Ref.: #25013]	Enrichment culture	LB agar medium
[Ref.: #25013]	Enrichment culture composition	g/l: tryptone 10.0, yeast extract 5.0, NaCl 10.0 and agar 20.0; pH 7.0
[Ref.: #25013]	Enrichment culture duration	3 days
[Ref.: #25013]	Enrichment culture temperature	30 ̊C
[Ref.: #25013]	Isolation/enrichment procedure	standard dilution plating technique on Luria–Bertani

[Ref.: #67770]	Sample type/isolated from	Soil of lead-cadmium tailing
[Ref.: #67770]	Geographic location (country and/or sea, region)	Qixia District, Nanjing
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KU198338 (>99% sequence identity) for Saccharibacillus from Microbeatlas

Aquatic Samples	177
Soil Samples	77
Animal Samples	522
Plant Samples	59
Total Samples	835

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #25013]	Saccharibacillus sp. H6 16S ribosomal RNA gene, partial sequence	KU198338	1518	GenBank	1763540 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Saccharibacillus qingshengii JCM 31172	GCA_013185195	contig	GenBank	1763540 tax ID
[Ref.: #66792]	Saccharibacillus qingshengii strain JCM 31172	1763540.3	wgs	PATRIC	1763540 tax ID	*
[Ref.: #66792]	Saccharibacillus qingshengii JCM 31172	2910445405	draft	JGI IMG/M	1763540 tax ID	*

[Ref.: #25013]

GC-content

58.4 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Saccharibacillus qingshengii strain JCM 31172 PATRIC: 1763540.3
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Saccharibacillus qingshengii strain JCM 31172 PATRIC: 1763540.3
[Ref.: #69480]	motile	yes	88.606	no
[Ref.: #69480]	gram-positive	yes	88.967	yes
[Ref.: #69480]	anaerobic	no	98.075	yes
[Ref.: #69480]	aerobic	yes	80.197	yes
[Ref.: #69480]	halophile	no	88.994	no
[Ref.: #69480]	spore-forming	yes	93.161	yes
[Ref.: #69480]	thermophile	no	99.851	yes
[Ref.: #69480]	glucose-util	yes	90.256	no
[Ref.: #69480]	flagellated	yes	82.736	no
[Ref.: #69480]	glucose-ferment	no	70.379	no

Availability in culture collections External links

[Ref.: #25013]

Culture collection no.

CCTCC AB 2016001, JCM 31172

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Saccharibacillus qingshengii sp. nov., isolated from a lead-cadmium tailing.	Han H, Gao S, Wang Q, He LY, Sheng XF	Int J Syst Evol Microbiol	10.1099/ijsem.0.001404	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#25013

H. G. Han, S.,Wang, Q.,He, L. Y.,Sheng, X. F.: Saccharibacillus qingshengii sp. nov., isolated from a lead-cadmium tailing. IJSEM 66: 4645 - 4649 2016 ( DOI 10.1099/ijsem.0.001404 , PubMed 27514529 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Saccharibacillus qingshengii strain JCM 31172

Saccharibacillus qingshengii strain JCM 31172

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