Sediminibacterium aquarii (AA5, KACC 18509, JCM 31013)

Name: Sediminibacterium aquarii (AA5, KACC 18509, JCM 31013)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133194

Type strain

Strain Designation AA5

Culture col. no. AA5 KACC 18509 JCM 31013

NCBI tax ID(s) 1706829

Special Collections JCM Literature strains

History JCM <-- T.-Y. Ahn; Dankook Univ., South Korea; AA5.

Links

Sediminibacterium aquarii AA5 is an obligate aerobe, Gram-negative, motile bacterium that was isolated from sediment of a fishbowl.

Gram-negative motile rod-shaped obligate aerobe 16S sequence Bacteria

Name and taxonomic classification

SI-ID 133460

JCM 31013

@ref 20215

Last LPSN update 2026-05-29 08:38:02

Domain Bacteria

Phylum Bacteroidota

Class Chitinophagia

Order Chitinophagales

Family Chitinophagaceae

Genus Sediminibacterium

Species Sediminibacterium aquarii

Full scientific name Sediminibacterium aquarii Kim et al. 2016

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
24990	negative	1.1-1.6 µm	0.4-0.6 µm	rod-shaped

Colony morphology

@ref	Colony color	Incubation period	Medium used
24990	orange	3 days	R2A agar (Reasoner's 2A agar)

Culture and growth conditions

Culture medium

@ref	Name	Growth
24990	Reasoner's 2A agar (R2A)
24990	NA (Nutrient Agar)

Culture temp

@ref	Growth	Type	Temperature (°C)
24990	positive	growth	15.0-37.0
24990	positive	optimum	30
67770	positive	growth	30

Culture pH

@ref	Ability	Type	PH
24990	positive	optimum	7
24990	positive	growth	5.0-8.0

Physiology and metabolism

Oxygen tolerance

24990

Oxygen toleranceobligate aerobe

Halophily

@ref	Salt	Growth	Tested relation	Concentration
24990	NaCl	positive	maximum	0 %

Observation

67770

Observationquinones: MK-7

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
24990	58143 ChEBI	5-dehydro-D-gluconate	+	assimilation
24990	2511 ChEBI	agarose	-	hydrolysis
24990	85146 ChEBI	carboxymethylcellulose	-	hydrolysis
24990		casein	-	hydrolysis
24990	17634 ChEBI	D-glucose	-	assimilation
24990	17634 ChEBI	D-glucose	-	builds acid from
24990	65327 ChEBI	D-xylose	-	builds acid from
24990	16991 ChEBI	dna	-	hydrolysis
24990	4853 ChEBI	esculin	+	hydrolysis
24990	4853 ChEBI	esculin	+	assimilation
24990	5291 ChEBI	gelatin	-	hydrolysis
24990	17234 ChEBI	glucose	-	fermentation
24990	30849 ChEBI	L-arabinose	-	assimilation
24990	6731 ChEBI	melezitose	-	builds acid from
24990	17632 ChEBI	nitrate	-	reduction
24990	17309 ChEBI	pectin	-	hydrolysis
24990	16634 ChEBI	raffinose	-	builds acid from
24990	17814 ChEBI	salicin	-	builds acid from
24990	28017 ChEBI	starch	-	hydrolysis
24990	17992 ChEBI	sucrose	-	builds acid from
24990	53424 ChEBI	tween 20	-	hydrolysis
24990	53425 ChEBI	tween 60	+	hydrolysis

Antibiotic resistance

@ref	ChEBI	Metabolite	Sensitivity conc.
24990	28971	ampicillin	10 µg
24990	3393	carbenicillin	100 µg
24990	17698	chloramphenicol	30 µg
24990	28368	novobiocin	10 µg
24990	18208	penicillin g	10 Unit

Metabolite production

@ref	Chebi-ID	Metabolite	Production
24990	16136 ChEBI	hydrogen sulfide
24990	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
24990	acid phosphatase	+	3.1.3.2
24990	alkaline phosphatase	+	3.1.3.1
24990	alpha-chymotrypsin	-	3.4.21.1
24990	alpha-fucosidase	+	3.2.1.51
24990	alpha-galactosidase	-	3.2.1.22
24990	alpha-glucosidase	-	3.2.1.20
24990	alpha-mannosidase	-	3.2.1.24
24990	arginine dihydrolase	-	3.5.3.6
24990	beta-galactosidase	+	3.2.1.23
24990	beta-glucosidase	+	3.2.1.21
24990	beta-glucuronidase	-	3.2.1.31
24990	catalase	+	1.11.1.6
24990	cystine arylamidase	+	3.4.11.3
24990	cytochrome oxidase	+	1.9.3.1
24990	esterase (C 4)	+
24990	esterase Lipase (C 8)	+
24990	leucine arylamidase	+	3.4.11.1
24990	lipase (C 14)	-
24990	N-acetyl-beta-glucosaminidase	+	3.2.1.52
24990	naphthol-AS-BI-phosphohydrolase	+
24990	trypsin	+	3.4.21.4
24990	urease	-	3.5.1.5
24990	valine arylamidase	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Built environment	#Water reservoir (Aquarium/pool)
#Environmental	#Aquatic	#Sediment

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent	Isolation procedure
24990	sediment of a fishbowl				standard dilution plating technique
67770	Sediment in a fishbowl	Republic of Korea	KOR	Asia

Interaction and safety

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
24990	Sediminibacterium aquarii strain AA5 16S ribosomal RNA gene, partial sequence	KR812546	1450		1706829

GC content

@ref	GC-content (mol%)	Method
67770	44.7	high performance liquid chromatography (HPLC)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Sediminibacterium roseum sp. nov., isolated from sewage sediment.	Song Y, Jia J, Liu D, Choi L, Wang G, Li M	Int J Syst Evol Microbiol	10.1099/ijsem.0.002355	2017
Phylogeny	Sediminibacterium aquarii sp. nov., isolated from sediment in a fishbowl.	Kim Y, Kim B, Kang K, Ahn TY	Int J Syst Evol Microbiol	10.1099/ijsem.0.001380	2016

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#24990	Y. K. Kim, Bobae,Kang, Keunsoo,Ahn, Tae-Young: Sediminibacterium aquarii sp. nov., isolated from sediment in a fishbowl. IJSEM 66: 4501 - 4505 2016 ( DOI 10.1099/ijsem.0.001380 , PubMed 27498849 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Sediminibacterium aquarii (AA5, KACC 18509, JCM 31013)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Halophily

Observation

Metabolite utilization

Antibiotic resistance

Metabolite production

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

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