Name: Sediminibacterium aquarii AA5
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133194

Type strain:

Species: Sediminibacterium aquarii

Strain Designation: AA5

Culture col. no.: KACC 18509, JCM 31013

Strain history: T.-Y. Ahn; Dankook Univ., South Korea; AA5.

NCBI tax ID(s): 1706829 (species)

Section

Sediminibacterium aquarii AA5 is an obligate aerobe, Gram-negative, motile bacterium that was isolated from sediment of a fishbowl.

Gram-negative
motile
rod-shaped
obligate aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Chitinophagia*
	Order	*Chitinophagales*
	Family	*Chitinophagaceae*
	Genus	*Sediminibacterium*
	Species	**Sediminibacterium aquarii**
	Full Scientific Name (LPSN)	Sediminibacterium aquarii Kim et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #24990]	Gram stain	negative

[Ref.: #24990]	Cell length	1.1-1.6 µm

[Ref.: #24990]	Cell width	0.4-0.6 µm

[Ref.: #24990]	Cell shape	rod-shaped

[Ref.: #24990]	Motility	yes

[Ref.: #24990]	Colony color	orange
[Ref.: #24990]	Incubation period	3 days
[Ref.: #24990]	Cultivation medium used	R2A agar (Reasoner's 2A agar)

Information on culture and growth conditions Culture and growth conditions

[Ref.: #24990]

Culture medium

Reasoner's 2A agar (R2A)

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Culture medium growth

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Culture medium

NA (Nutrient Agar)

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Culture medium growth

		Temperature
[Ref.: #24990]	growth	15.0-37.0 °C
[Ref.: #24990]	optimum	30 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #24990]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #24990]			optimum	7
[Ref.: #24990]			growth	5.0-8.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #24990]

Oxygen tolerance

obligate aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #24990]		NaCl		maximum	0	%

[Ref.: #67770]

Observation

quinones: MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #24990]	5-dehydro-D-gluconate ChEBI	+	assimilation
[Ref.: #24990]	agarose ChEBI	-	hydrolysis
[Ref.: #24990]	carboxymethylcellulose ChEBI	-	hydrolysis
[Ref.: #24990]	casein	-	hydrolysis
[Ref.: #24990]	D-glucose ChEBI	-	assimilation
[Ref.: #24990]	D-glucose ChEBI	-	builds acid from
[Ref.: #24990]	D-xylose ChEBI	-	builds acid from
[Ref.: #24990]	dna ChEBI	-	hydrolysis
[Ref.: #24990]	esculin ChEBI	+	hydrolysis
[Ref.: #24990]	esculin ChEBI	+	assimilation
[Ref.: #24990]	gelatin ChEBI	-	hydrolysis
[Ref.: #24990]	glucose ChEBI	-	fermentation
[Ref.: #24990]	L-arabinose ChEBI	-	assimilation
[Ref.: #24990]	melezitose ChEBI	-	builds acid from
[Ref.: #24990]	nitrate ChEBI	-	reduction
[Ref.: #24990]	pectin ChEBI	-	hydrolysis
[Ref.: #24990]	raffinose ChEBI	-	builds acid from
[Ref.: #24990]	salicin ChEBI	-	builds acid from
[Ref.: #24990]	starch ChEBI	-	hydrolysis
[Ref.: #24990]	sucrose ChEBI	-	builds acid from
[Ref.: #24990]	tween 20 ChEBI	-	hydrolysis
[Ref.: #24990]	tween 60 ChEBI	+	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration
[Ref.: #24990]	ampicillin ChEBI	yes	10	µg
[Ref.: #24990]	carbenicillin ChEBI	yes	100	µg
[Ref.: #24990]	chloramphenicol ChEBI	yes	30	µg
[Ref.: #24990]	novobiocin ChEBI	yes	10	µg
[Ref.: #24990]	penicillin g ChEBI	no	10	Unit

	Metabolite production	Metabolite	Production
[Ref.: #24990]		hydrogen sulfide ChEBI	no
[Ref.: #24990]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #24990]	acid phosphatase	+	3.1.3.2
[Ref.: #24990]	alkaline phosphatase	+	3.1.3.1
[Ref.: #24990]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #24990]	alpha-fucosidase	+	3.2.1.51
[Ref.: #24990]	alpha-galactosidase	-	3.2.1.22
[Ref.: #24990]	alpha-glucosidase	-	3.2.1.20
[Ref.: #24990]	alpha-mannosidase	-	3.2.1.24
[Ref.: #24990]	arginine dihydrolase	-	3.5.3.6
[Ref.: #24990]	beta-galactosidase	+	3.2.1.23
[Ref.: #24990]	beta-glucosidase	+	3.2.1.21
[Ref.: #24990]	beta-glucuronidase	-	3.2.1.31
[Ref.: #24990]	catalase	+	1.11.1.6
[Ref.: #24990]	cystine arylamidase	+	3.4.11.3
[Ref.: #24990]	cytochrome oxidase	+	1.9.3.1
[Ref.: #24990]	esterase (C 4)	+
[Ref.: #24990]	esterase Lipase (C 8)	+
[Ref.: #24990]	leucine arylamidase	+	3.4.11.1
[Ref.: #24990]	lipase (C 14)	-
[Ref.: #24990]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #24990]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #24990]	trypsin	+	3.4.21.4
[Ref.: #24990]	urease	-	3.5.1.5
[Ref.: #24990]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24990]	Sample type/isolated from	sediment of a fishbowl
[Ref.: #24990]	Isolation/enrichment procedure	standard dilution plating technique

[Ref.: #67770]	Sample type/isolated from	Sediment in a fishbowl
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Built environment	#Water reservoir (Aquarium/pool)
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24990]	Sediminibacterium sp. AA5 16S ribosomal RNA gene, partial sequence	KR812546	1450	GenBank	1706829 tax ID

[Ref.: #67770]

GC-content

44.7 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #24990]

Culture collection no.

KACC 18509, JCM 31013

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Sediminibacterium roseum sp. nov., isolated from sewage sediment.	Song Y, Jia J, Liu D, Choi L, Wang G, Li M	Int J Syst Evol Microbiol	10.1099/ijsem.0.002355	2017	*
Phylogeny	Sediminibacterium aquarii sp. nov., isolated from sediment in a fishbowl.	Kim Y, Kim B, Kang K, Ahn TY	Int J Syst Evol Microbiol	10.1099/ijsem.0.001380	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24990

Y. K. Kim, Bobae,Kang, Keunsoo,Ahn, Tae-Young: Sediminibacterium aquarii sp. nov., isolated from sediment in a fishbowl. IJSEM 66: 4501 - 4505 2016 ( DOI 10.1099/ijsem.0.001380 , PubMed 27498849 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
* These data were automatically processed and therefore are not curated

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