Name: Sphingobacterium jejuense GJ30-7
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133193

Type strain:

Species: Sphingobacterium jejuense

Strain Designation: GJ30-7

Culture col. no.: KACC 18625, JCM 30948

Strain history: W.-T. Im; Hankyong Natl. Univ., South Korea; GJ30-7.

NCBI tax ID(s): 1813877 (species)

Section

Sphingobacterium jejuense GJ30-7 is an obligate aerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from compost.

colony-forming
Gram-negative
rod-shaped
mesophilic
obligate aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Sphingobacteriia*
	Order	*Sphingobacteriales*
	Family	*Sphingobacteriaceae*
	Genus	*Sphingobacterium*
	Species	**Sphingobacterium jejuense**
	Full Scientific Name (LPSN)	Sphingobacterium jejuense Siddiqi et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #24989]	Gram stain	negative

[Ref.: #24989]	Cell length	1.5-3.0 µm

[Ref.: #24989]	Cell width	0.3-0.7 µm

[Ref.: #24989]	Cell shape	rod-shaped

[Ref.: #24989]	Motility	no

[Ref.: #24989]	Colony size	0.5-1.5 mm
[Ref.: #24989]	Colony color	light yellow
[Ref.: #24989]	Colony shape	circular
[Ref.: #24989]	Cultivation medium used	R2A agar (Reasoner's 2A agar)

Information on culture and growth conditions Culture and growth conditions

[Ref.: #24989]

Culture medium

Reasoner's 2A agar (R2A)

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Culture medium growth

		Temperature
[Ref.: #24989]	optimum	30 °C
[Ref.: #24989]	growth	20.0-40.0 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #24989]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #24989]			optimum	7
[Ref.: #24989]			growth	5.5-8.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #24989]

Oxygen tolerance

obligate aerobe

[Ref.: #24989]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #24989]		NaCl		optimum	0	%
[Ref.: #24989]		NaCl		growth	0.5-1.5	%(w/v)

[Ref.: #67770]

Observation

quinones: MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #24989]	3-hydroxybutyrate ChEBI	-	assimilation
[Ref.: #24989]	4-hydroxybenzoate ChEBI	-	assimilation
[Ref.: #24989]	5-dehydro-D-gluconate ChEBI	-	assimilation
[Ref.: #24989]	adipate ChEBI	-	assimilation
[Ref.: #24989]	carboxymethylcellulose ChEBI	-	hydrolysis
[Ref.: #24989]	casein	-	hydrolysis
[Ref.: #24989]	D-glucose ChEBI	+	assimilation
[Ref.: #24989]	D-mannitol ChEBI	-	assimilation
[Ref.: #24989]	D-mannose ChEBI	+	assimilation
[Ref.: #24989]	D-ribose ChEBI	-	assimilation
[Ref.: #24989]	decanoate ChEBI	-	assimilation
[Ref.: #24989]	esculin ChEBI	+	hydrolysis
[Ref.: #24989]	glycogen ChEBI	+	assimilation
[Ref.: #24989]	L-arabinose ChEBI	-	assimilation
[Ref.: #24989]	L-fucose ChEBI	-	assimilation
[Ref.: #24989]	L-histidine ChEBI	-	assimilation
[Ref.: #24989]	L-proline-4-nitroanilide	+	assimilation
[Ref.: #24989]	L-rhamnose ChEBI	-	assimilation
[Ref.: #24989]	lactate ChEBI	-	assimilation
[Ref.: #24989]	malate ChEBI	-	assimilation
[Ref.: #24989]	maltose ChEBI	+	assimilation
[Ref.: #24989]	melibiose ChEBI	+	assimilation
[Ref.: #24989]	N-acetylglucosamine ChEBI	+	assimilation
[Ref.: #24989]	phenylacetate ChEBI	-	assimilation
[Ref.: #24989]	potassium gluconate ChEBI	-	assimilation
[Ref.: #24989]	salicin ChEBI	+	assimilation
[Ref.: #24989]	sodium acetate ChEBI	-	assimilation
[Ref.: #24989]	sodium citrate ChEBI	-	assimilation
[Ref.: #24989]	starch ChEBI	-	hydrolysis
[Ref.: #24989]	sucrose ChEBI	-	assimilation
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #24989]	acid phosphatase	+	3.1.3.2
[Ref.: #24989]	alkaline phosphatase	+	3.1.3.1
[Ref.: #24989]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #24989]	alpha-fucosidase	-	3.2.1.51
[Ref.: #24989]	alpha-galactosidase	+	3.2.1.22
[Ref.: #24989]	alpha-glucosidase	+	3.2.1.20
[Ref.: #24989]	alpha-mannosidase	+	3.2.1.24
[Ref.: #24989]	beta-galactosidase	+	3.2.1.23
[Ref.: #24989]	beta-glucosidase	+	3.2.1.21
[Ref.: #24989]	beta-glucuronidase	+	3.2.1.31
[Ref.: #24989]	catalase	+	1.11.1.6
[Ref.: #24989]	cystine arylamidase	+	3.4.11.3
[Ref.: #24989]	cytochrome oxidase	+	1.9.3.1
[Ref.: #24989]	esterase	+
[Ref.: #24989]	esterase Lipase (C 8)	+
[Ref.: #24989]	leucine arylamidase	+	3.4.11.1
[Ref.: #24989]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #24989]	trypsin	+	3.4.21.4
[Ref.: #24989]	urease	-	3.5.1.5
[Ref.: #24989]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24989]	Sample type/isolated from	compost
[Ref.: #24989]	Geographic location (country and/or sea, region)	Jeju island
[Ref.: #24989]	Country	Republic of Korea
[Ref.: #24989]	Country ISO 3 Code	KOR
[Ref.: #24989]	Continent	Asia
[Ref.: #24989]	Enrichment culture	R2A agar (Reasoner's 2A agar,Difco)
[Ref.: #24989]	Enrichment culture duration	5 days
[Ref.: #24989]	Enrichment culture temperature	23.0--25.0 ̊C

[Ref.: #67770]	Sample type/isolated from	Compost
* marker position based on {}

Isolation sources categories

#Engineered

#Biodegradation

#Composting

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KT950743 (>99% sequence identity) for Sphingobacterium jejuense subclade from Microbeatlas

Aquatic Samples	80
Soil Samples	101
Animal Samples	297
Plant Samples	19
Total Samples	497

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24989]	Sphingobacterium sp. GJ30-7 16S ribosomal RNA gene, partial sequence	KT950743	1452	GenBank	1813877 tax ID

[Ref.: #24989]

GC-content

43 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #24989]

Culture collection no.

KACC 18625, JCM 30948

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Sphingobacterium jejuense sp. nov., with ginsenoside-converting activity, isolated from compost.	Siddiqi MZ, Muhammad Shafi S, Choi KD, Im WT, Aslam Z	Int J Syst Evol Microbiol	10.1099/ijsem.0.001370	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24989

M. Z. M. S. Siddiqi, Siddiqi,Choi, Kang Duk,Im, Wan-Taek,Aslam, Zubair: Sphingobacterium jejuense sp. nov., with ginsenoside-converting activity, isolated from compost. IJSEM 66: 4433 - 4439 2016 ( DOI 10.1099/ijsem.0.001370 , PubMed 27498829 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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