Name: Mycobacterium sarraceniae DL734
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133184

Type strain:

Species: Mycobacterium sarraceniae

Strain Designation: DL734

Culture col. no.: JCM 30395, NCCB 100519

Strain history: J. L. Dahl; Univ. of Minnesota Duluth, USA; DL734.

NCBI tax ID(s): 1534348 (species)

Section

Mycobacterium sarraceniae DL734 is a mesophilic bacterium that was isolated from water samples collected from S. purpurea pitchers.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Mycobacteriales*
	Family	*Mycobacteriaceae*
	Genus	*Mycobacterium*
	Species	**Mycobacterium sarraceniae**
	Full Scientific Name (LPSN)	Mycobacterium sarraceniae Tran and Dahl 2016

Synonym

Mycolicibacterium sarraceniae

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #24967]	Cell shape	coccus-shaped

[Ref.: #69480]	Motility	no Confidence in %92.083

[Ref.: #24967]	Colony color	orange
[Ref.: #24967]	Incubation period	7-10 days
[Ref.: #24967]	Cultivation medium used	Middlebrook 7H11 agar withOADC reaches maturity

[Ref.: #24967]	Colony color	yellow
[Ref.: #24967]	Incubation period	5-7 days
[Ref.: #24967]	Cultivation medium used	Middlebrook 7H11 agar withOADC reaches maturity

[Ref.: #24967]	Colony color	orange
[Ref.: #24967]	Incubation period	7-10 days
[Ref.: #24967]	Cultivation medium used	Middlebrook 7H11 with OADC reaches maturity

[Ref.: #24967]	Colony color	pale yellow
[Ref.: #24967]	Incubation period	5-7 days
[Ref.: #24967]	Cultivation medium used	Middlebrook 7H11 agar with OADC reaches maturity

Information on culture and growth conditions Culture and growth conditions

[Ref.: #24967]

Culture medium

Middlebrook 7H11

[Ref.: #24967]

Culture medium growth

[Ref.: #24967]

Culture medium

Middlebrook 7H11 agar withOADC reaches
maturity

[Ref.: #24967]

Culture medium growth

[Ref.: #24967]

Culture medium

Middlebrook 7H11 with OADC reaches maturity

[Ref.: #24967]

Culture medium growth

[Ref.: #24967]

Culture medium

Middlebrook 7H11 agar with OADC reaches maturity

[Ref.: #24967]

Culture medium growth

	Kind of temperature		Temperature
[Ref.: #24967]		growth	28-32 °C
[Ref.: #24967]	no	growth	37 °C
[Ref.: #24967]		growth	28-37 °C
[Ref.: #67770]		growth	28 °C

[Ref.: #24967]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %94
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.986

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #24967]		NaCl		growth	5	%
[Ref.: #24967]		NaCl		growth	5	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #24967]	nitrate ChEBI	-	reduction
[Ref.: #24967]	nitrate ChEBI	+	reduction
[Ref.: #24967]	potassium tellurite ChEBI	-	reduction
[Ref.: #24967]	potassium tellurite ChEBI	+	reduction
[Ref.: #24967]	tween 80 ChEBI	-	hydrolysis

	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #24967]	ampicillin ChEBI	yes
[Ref.: #24967]	aztreonam ChEBI		yes
[Ref.: #24967]	chloramphenicol ChEBI	yes
[Ref.: #24967]	ciprofloxacin ChEBI	yes
[Ref.: #24967]	neomycin ChEBI	yes
[Ref.: #24967]	penicillin ChEBI	yes
[Ref.: #24967]	penicillin ChEBI		yes
[Ref.: #24967]	streptomycin ChEBI	yes
[Ref.: #24967]	tetracycline ChEBI	yes
[Ref.: #24967]	trimethoprim ChEBI		yes

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #24967]		catalase	-	1.11.1.6
[Ref.: #24967]		urease	-	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24967]	Sample type/isolated from	water samples collected from S. purpurea pitchers
[Ref.: #24967]	Geographic location (country and/or sea, region)	Repose Lake in northern Minnesota
[Ref.: #24967]	Country	USA
[Ref.: #24967]	Country ISO 3 Code	USA
[Ref.: #24967]	Continent	North America

[Ref.: #67770]	Sample type/isolated from	Water sample from Sarracenia purpurea pitchers at Repose Lake
[Ref.: #67770]	Host species	Sarracenia purpurea
[Ref.: #67770]	Geographic location (country and/or sea, region)	MN
[Ref.: #67770]	Country	USA
[Ref.: #67770]	Country ISO 3 Code	USA
[Ref.: #67770]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	-
#Host	#Plants	#Herbaceous plants (Grass,Crops)

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24967]	16S rRNA	KM216315		GenBank

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Mycolicibacterium sarraceniae JCM 30395	GCA_010731875	complete	GenBank	1534348 tax ID	*
[Ref.: #66792]	Mycolicibacterium sarraceniae strain JCM 30395	1534348.5	complete	PATRIC	1534348 tax ID	*
[Ref.: #66792]	Mycolicibacterium sarraceniae JCM 30395	2888238920	complete	JGI IMG/M	1534348 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Mycolicibacterium sarraceniae JCM 30395 NCBI: GCA_010731875.1
[Ref.: #69481]	spore-forming	no	94	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Mycolicibacterium sarraceniae JCM 30395 NCBI: GCA_010731875.1
[Ref.: #69480]	motile	no	95.206	no
[Ref.: #69480]	flagellated	no	98.512	no
[Ref.: #69480]	gram-positive	yes	88.835	no
[Ref.: #69480]	anaerobic	no	99.313	no
[Ref.: #69480]	aerobic	yes	88.864	no
[Ref.: #69480]	halophile	no	92.412	no
[Ref.: #69480]	spore-forming	no	87.431	no
[Ref.: #69480]	glucose-util	yes	79.434	no
[Ref.: #69480]	thermophile	no	99.401	yes
[Ref.: #69480]	glucose-ferment	no	90.394	no

Availability in culture collections External links

[Ref.: #24967]

Culture collection no.

JCM 30395, NCCB 100519

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Mycolicibacterium baixiangningiae sp. nov. and Mycolicibacterium mengxianglii sp. nov., two new rapidly growing mycobacterial species.	Cheng Y, Lei W, Wang X, Tian Z, Liu H, Yang J, Lu S, Lai XH, Pu J, Huang Y, Zhang S, Yang C, Lian X, Bai Y, Wan K, Wang S, Xu J	Int J Syst Evol Microbiol	10.1099/ijsem.0.005019	2021	*
Phylogeny	Mycobacterium sarraceniae sp. nov. and Mycobacterium helvum sp. nov., isolated from the pitcher plant Sarracenia purpurea.	Tran PM, Dahl JL	Int J Syst Evol Microbiol	10.1099/ijsem.0.001377	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24967

P. M. D. Tran, John L.: Mycobacterium sarraceniae sp. nov. and Mycobacterium helvum sp. nov., isolated from the pitcher plant Sarracenia purpurea. IJSEM 66: 4480 - 4485 2016 ( DOI 10.1099/ijsem.0.001377 , PubMed 27498537 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Mycolicibacterium sarraceniae JCM 30395

Mycolicibacterium sarraceniae JCM 30395

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