Name: Rhizobium gei ZFJT-2
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 133182

Type strain:

Species: Rhizobium gei

Strain Designation: ZFJT-2

Culture col. no.: CCTCC AB 2013015, KCTC 32301, LMG 27603

NCBI tax ID(s): 1395951 (species)

Special Collections

Section

When using BacDive for research please cite our paper

Rhizobium gei ZFJT-2 is an aerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from surface-sterilized stem of Geum aleppicum Jacq..

colony-forming
Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Rhizobiaceae*
	Genus	*Rhizobium*
	Species	**Rhizobium gei**
	Full Scientific Name (LPSN)	Rhizobium gei Shi et al. 2016

Synonym

"Pararhizobium gei"

Information on morphological and physiological properties Morphology

[Ref.: #24962]	Gram stain	negative

[Ref.: #24962]	Cell length	3.5-5.4 µm

[Ref.: #24962]	Cell width	0.7-0.9 µm

[Ref.: #24962]	Cell shape	rod-shaped

[Ref.: #24962]	Motility	yes

[Ref.: #24962]	Flagellum arrangement	polar

[Ref.: #24962]	Colony size	2 mm
[Ref.: #24962]	Colony color	white
[Ref.: #24962]	Colony shape	circular
[Ref.: #24962]	Incubation period	2 days
[Ref.: #24962]	Cultivation medium used	YMA

Information on culture and growth conditions Culture and growth conditions

[Ref.: #24962]

Culture medium

YMA

[Ref.: #24962]

Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #24962]			growth	10-33 °C
[Ref.: #24962]			optimum	28-30 °C

	pH	Kind of pH		pH
[Ref.: #24962]			optimum	7
[Ref.: #24962]			growth	7.0-9.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #24962]

Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #24962]		NaCl		growth	0-0.5	%(w/v)
[Ref.: #24962]		NaCl		optimum	0	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #24962]	4-hydroxybenzaldehyde ChEBI	-	carbon source
[Ref.: #24962]	adipate ChEBI	-	carbon source
[Ref.: #24962]	alanine ChEBI	+	carbon source
[Ref.: #24962]	alanine ChEBI	+	nitrogen source
[Ref.: #24962]	catechol ChEBI	-	carbon source
[Ref.: #24962]	D-arabinose ChEBI	+	carbon source
[Ref.: #24962]	D-fructose ChEBI	+	carbon source
[Ref.: #24962]	D-galactose ChEBI	-	carbon source
[Ref.: #24962]	D-gluconate ChEBI	+	carbon source
[Ref.: #24962]	D-glucosamine ChEBI	+	carbon source
[Ref.: #24962]	D-mannitol ChEBI	+	carbon source
[Ref.: #24962]	D-mannose ChEBI	+	carbon source
[Ref.: #24962]	D-ribose ChEBI	-	carbon source
[Ref.: #24962]	D-sorbitol ChEBI	-	carbon source
[Ref.: #24962]	D-xylose ChEBI	+	carbon source
[Ref.: #24962]	dextrin ChEBI	-	carbon source
[Ref.: #24962]	esculin ChEBI	+	hydrolysis
[Ref.: #24962]	galactitol ChEBI	-	carbon source
[Ref.: #24962]	glucose ChEBI	+	builds acid from
[Ref.: #24962]	glucose ChEBI	+	carbon source
[Ref.: #24962]	glycerol ChEBI	+	carbon source
[Ref.: #24962]	glycine ChEBI	-	carbon source
[Ref.: #24962]	glycine ChEBI	+	nitrogen source
[Ref.: #24962]	L-arginine ChEBI	+	carbon source
[Ref.: #24962]	L-asparagine ChEBI	-	nitrogen source
[Ref.: #24962]	L-asparagine ChEBI	+	nitrogen source
[Ref.: #24962]	L-glutamate ChEBI	+	carbon source
[Ref.: #24962]	L-glutamate ChEBI	+	nitrogen source
[Ref.: #24962]	L-histidine ChEBI	+	nitrogen source
[Ref.: #24962]	L-isoleucine ChEBI	+	nitrogen source
[Ref.: #24962]	L-leucine ChEBI	+	nitrogen source
[Ref.: #24962]	L-lysine ChEBI	+	nitrogen source
[Ref.: #24962]	L-methionine ChEBI	+	carbon source
[Ref.: #24962]	L-methionine ChEBI	+	nitrogen source
[Ref.: #24962]	L-phenylalanine ChEBI	+	nitrogen source
[Ref.: #24962]	L-proline ChEBI	+	carbon source
[Ref.: #24962]	L-proline ChEBI	+	nitrogen source
[Ref.: #24962]	L-rhamnose ChEBI	+	carbon source
[Ref.: #24962]	L-threonine ChEBI	+	carbon source
[Ref.: #24962]	L-threonine ChEBI	+	nitrogen source
[Ref.: #24962]	L-tryptophan ChEBI	-	nitrogen source
[Ref.: #24962]	L-tyrosine ChEBI	-	carbon source
[Ref.: #24962]	L-valine ChEBI	-	carbon source
[Ref.: #24962]	L-valine ChEBI	+	nitrogen source
[Ref.: #24962]	lactose ChEBI	+	carbon source
[Ref.: #24962]	maltose ChEBI	+	carbon source
[Ref.: #24962]	melibiose ChEBI	-	carbon source
[Ref.: #24962]	myo-inositol ChEBI	+	carbon source
[Ref.: #24962]	nitrate ChEBI	+	reduction
[Ref.: #24962]	raffinose ChEBI	-	carbon source
[Ref.: #24962]	sodium acetate ChEBI	+	carbon source
[Ref.: #24962]	sodium citrate ChEBI	-	carbon source
[Ref.: #24962]	starch ChEBI	-
[Ref.: #24962]	starch ChEBI	-	carbon source
[Ref.: #24962]	sucrose ChEBI	+	carbon source
[Ref.: #24962]	tartrate ChEBI	-	carbon source
[Ref.: #24962]	trehalose ChEBI	+	carbon source
[Ref.: #24962]	tryptophan ChEBI	-	energy source
[Ref.: #24962]	vanillate ChEBI	-	carbon source
[Ref.: #24962]	xylan ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #24962]		acetoin ChEBI	yes
[Ref.: #24962]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #24962]		acetoin ChEBI	+
[Ref.: #24962]		indole ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #24962]	6-phospho-beta-galactosidase	-	3.2.1.85
[Ref.: #24962]	acid phosphatase	+	3.1.3.2
[Ref.: #24962]	alkaline phosphatase	+	3.1.3.1
[Ref.: #24962]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #24962]	alpha-fucosidase	-	3.2.1.51
[Ref.: #24962]	alpha-galactosidase	-	3.2.1.22
[Ref.: #24962]	alpha-glucosidase	+	3.2.1.20
[Ref.: #24962]	alpha-mannosidase	-	3.2.1.24
[Ref.: #24962]	arginine dihydrolase	+	3.5.3.6
[Ref.: #24962]	beta-glucosidase	+	3.2.1.21
[Ref.: #24962]	beta-glucuronidase	-	3.2.1.31
[Ref.: #24962]	cystine arylamidase	+	3.4.11.3
[Ref.: #24962]	esterase (C 4)	+
[Ref.: #24962]	esterase lipase (C 8)	-
[Ref.: #24962]	leucine arylamidase	+	3.4.11.1
[Ref.: #24962]	lipase (C 14)	+
[Ref.: #24962]	lysine decarboxylase	+	4.1.1.18
[Ref.: #24962]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #24962]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #24962]	ornithine decarboxylase	+	4.1.1.17
[Ref.: #24962]	trypsin	+	3.4.21.4
[Ref.: #24962]	tryptophan deaminase	-	4.1.99.1
[Ref.: #24962]	urease	+	3.5.1.5
[Ref.: #24962]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24962]	Sample type/isolated from	surface-sterilized stem of Geum aleppicum Jacq.
[Ref.: #24962]	Geographic location (country and/or sea, region)	Taibai Mountain in Shaanxi Province
[Ref.: #24962]	Country	China
[Ref.: #24962]	Country ISO 3 Code	CHN
[Ref.: #24962]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Stem (Branch)
#Host Body-Site	#Plant	#Sterilized plant part

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24962]	Rhizobium gei strain ZFJT-2 16S ribosomal RNA gene, partial sequence	KF551166		GenBank ENA

[Ref.: #24962]

GC-content

58.3 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #24962]

Culture collection no.

CCTCC AB 2013015, KCTC 32301, LMG 27603

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Rhizobium gei sp. nov., a bacterial endophyte of Geum aleppicum.	Shi X, Li C, Zhao L, Si M, Zhu L, Xin K, Chen C, Wang Y, Shen X, Zhang L	Int J Syst Evol Microbiol	10.1099/ijsem.0.001348	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24962

X. L. Shi, Changfu,Zhao, Liang,Si, Meiru,Zhu, Lingfang,Xin, Kaiyun,Chen, Chaoqiong,Wang, Yao,Shen, Xihui,Zhang, Lei: Rhizobium gei sp. nov., a bacterial endophyte of Geum aleppicum. IJSEM 66: 4282 - 4288 2016 ( DOI 10.1099/ijsem.0.001348 , PubMed 27474082 )

* These data were automatically processed and therefore are not curated

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