Name: Vibrio cidicii 2756-81
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133177

Type strain:

Species: Vibrio cidicii

Strain Designation: 2756-81

Culture col. no.: LMG 29267, CIP 111013

Strain history: CIP <- 2016, Y. Boucher, Alberta Univ., Edmonton, Alberta, Canada: strain 2756-81

NCBI tax ID(s): 1763883 (species)

SI-ID 412576

CIP 111013

Section

Vibrio cidicii 2756-81 is a psychrophilic, Gram-negative, motile bacterium that forms circular colonies and was isolated from river water.

colony-forming
Gram-negative
motile
rod-shaped
psychrophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	"Vibrionales"
	Family	*Vibrionaceae*
	Genus	*Vibrio*
	Species	**Vibrio cidicii**
	Full Scientific Name (LPSN)	Vibrio cidicii Orata et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #24954]	Gram stain	negative
[Ref.: #118281]	Gram stain	negative

[Ref.: #24954]	Cell length	1.48-1.68 µm

[Ref.: #24954]	Cell width	0.64-0.78 µm

[Ref.: #24954]	Cell shape	rod-shaped
[Ref.: #118281]	Cell shape	rod-shaped

[Ref.: #24954]	Motility	yes
[Ref.: #118281]	Motility	yes

[Ref.: #24954]	Colony color	cream
[Ref.: #24954]	Colony shape	circular
[Ref.: #24954]	Cultivation medium used	TSB agar

[Ref.: #24954]	Colony color	yellow
[Ref.: #24954]	Cultivation medium used	TCBS agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #24954]

Culture medium

TSB agar

[Ref.: #24954]

Culture medium growth

[Ref.: #24954]

Culture medium

TCBS agar

[Ref.: #24954]

Culture medium growth

[Ref.: #118281]

Culture medium

CIP Medium 13

[Ref.: #118281]

Culture medium growth

[Ref.: #118281]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #24954]		no	growth	4 °C
[Ref.: #24954]		no	growth	45 °C

[Ref.: #24954]	Temperature range	psychrophilic
[Ref.: #24954]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

	Salt	Tested relation		Salt conc.
[Ref.: #24954]	NaCl		growth	0-6.5	%
[Ref.: #24954]	NaCl	inconsistent	growth	8	%
[Ref.: #24954]	NaCl	no	growth	10	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #24954]	1,2-propandiol ChEBI	-	carbon source
[Ref.: #24954]	2-deoxyadenosine ChEBI	+	carbon source
[Ref.: #24954]	2-deoxyadenosine ChEBI	+	energy source
[Ref.: #24954]	2-hydroxybutyrate ChEBI	+	carbon source
[Ref.: #24954]	2-hydroxybutyrate ChEBI	+	energy source
[Ref.: #24954]	2-oxobutanoate ChEBI	+	carbon source
[Ref.: #24954]	2-oxobutanoate ChEBI	+	energy source
[Ref.: #24954]	2-oxoglutarate ChEBI	+	carbon source
[Ref.: #24954]	2-oxoglutarate ChEBI	+	energy source
[Ref.: #24954]	4-hydroxyphenylacetic acid ChEBI	-	carbon source
[Ref.: #24954]	acetate ChEBI	+	carbon source
[Ref.: #24954]	acetate ChEBI	+	energy source
[Ref.: #24954]	acetoacetate ChEBI	+	carbon source
[Ref.: #24954]	acetoacetate ChEBI	+	energy source
[Ref.: #24954]	acetoin ChEBI	+	builds acid from
[Ref.: #24954]	adenosine ChEBI	+	carbon source
[Ref.: #24954]	adenosine ChEBI	+	energy source
[Ref.: #24954]	adipate ChEBI	-	carbon source
[Ref.: #24954]	alpha-hydroxyglutarate-gamma-lactone ChEBI	+	carbon source
[Ref.: #24954]	alpha-hydroxyglutarate-gamma-lactone ChEBI	+	energy source
[Ref.: #24954]	bromosuccinate ChEBI	+	carbon source
[Ref.: #24954]	bromosuccinate ChEBI	+	energy source
[Ref.: #24954]	cellobiose ChEBI	+	builds acid from
[Ref.: #24954]	cellobiose ChEBI	+	carbon source
[Ref.: #24954]	cellobiose ChEBI	+	energy source
[Ref.: #24954]	citrate ChEBI	+	carbon source
[Ref.: #24954]	citrate ChEBI	+	energy source
[Ref.: #24954]	D-alanine ChEBI	+	carbon source
[Ref.: #24954]	D-alanine ChEBI	+	energy source
[Ref.: #24954]	D-arabitol ChEBI	-	builds acid from
[Ref.: #24954]	D-arabitol ChEBI	-	carbon source
[Ref.: #24954]	D-aspartate ChEBI	-	carbon source
[Ref.: #24954]	D-fructose ChEBI	+	carbon source
[Ref.: #24954]	D-fructose ChEBI	+	energy source
[Ref.: #24954]	D-fructose 6-phosphate ChEBI	+	carbon source
[Ref.: #24954]	D-fructose 6-phosphate ChEBI	+	energy source
[Ref.: #24954]	D-galacturonic acid ChEBI	-	carbon source
[Ref.: #24954]	D-gluconate ChEBI	+	carbon source
[Ref.: #24954]	D-gluconate ChEBI	+	energy source
[Ref.: #24954]	D-glucosaminic acid ChEBI	-	carbon source
[Ref.: #24954]	D-glucose ChEBI	-	builds gas from
[Ref.: #24954]	D-glucose ChEBI	+	builds acid from
[Ref.: #24954]	D-glucose ChEBI	+	carbon source
[Ref.: #24954]	D-glucose ChEBI	+	energy source
[Ref.: #24954]	D-glucose 6-phosphate ChEBI	+	carbon source
[Ref.: #24954]	D-glucose 6-phosphate ChEBI	+	energy source
[Ref.: #24954]	D-malate ChEBI	+	carbon source
[Ref.: #24954]	D-malate ChEBI	+	energy source
[Ref.: #24954]	D-mannitol ChEBI	+	carbon source
[Ref.: #24954]	D-mannitol ChEBI	+	energy source
[Ref.: #24954]	D-mannose ChEBI	+	carbon source
[Ref.: #24954]	D-mannose ChEBI	+	energy source
[Ref.: #24954]	D-psicose ChEBI	+	carbon source
[Ref.: #24954]	D-psicose ChEBI	+	energy source
[Ref.: #24954]	D-ribose ChEBI	+	carbon source
[Ref.: #24954]	D-ribose ChEBI	+	energy source
[Ref.: #24954]	D-serine ChEBI	-	carbon source
[Ref.: #24954]	D-threonine ChEBI	-	carbon source
[Ref.: #24954]	D-xylose ChEBI	-	builds acid from
[Ref.: #24954]	D-xylose ChEBI	+	carbon source
[Ref.: #24954]	D-xylose ChEBI	+	energy source
[Ref.: #24954]	decanoate ChEBI	-	carbon source
[Ref.: #24954]	dna ChEBI	+	carbon source
[Ref.: #24954]	dna ChEBI	+	energy source
[Ref.: #24954]	erythritol ChEBI	-	builds acid from
[Ref.: #24954]	erythritol ChEBI	-	carbon source
[Ref.: #24954]	esculin ChEBI	+	hydrolysis
[Ref.: #24954]	esculin ChEBI	+	carbon source
[Ref.: #24954]	esculin ChEBI	+	energy source
[Ref.: #24954]	ethanolamine ChEBI	-	carbon source
[Ref.: #24954]	formate ChEBI	+	carbon source
[Ref.: #24954]	formate ChEBI	+	energy source
[Ref.: #24954]	fumarate ChEBI	+	carbon source
[Ref.: #24954]	fumarate ChEBI	+	energy source
[Ref.: #24954]	galactarate ChEBI	-	builds acid from
[Ref.: #24954]	galactitol ChEBI	-	builds acid from
[Ref.: #24954]	gelatin ChEBI	+	hydrolysis
[Ref.: #24954]	gelatin ChEBI	+	carbon source
[Ref.: #24954]	gelatin ChEBI	+	energy source
[Ref.: #24954]	glucose ChEBI	+	fermentation
[Ref.: #24954]	glucose 1-phosphate ChEBI	+	carbon source
[Ref.: #24954]	glucose 1-phosphate ChEBI	+	energy source
[Ref.: #24954]	glucuronamide ChEBI	-	carbon source
[Ref.: #24954]	glycerol ChEBI	-	builds acid from
[Ref.: #24954]	glycerol ChEBI	+	carbon source
[Ref.: #24954]	glycerol ChEBI	+	energy source
[Ref.: #24954]	glycerol 1-phosphate ChEBI	+	carbon source
[Ref.: #24954]	glycerol 1-phosphate ChEBI	+	energy source
[Ref.: #24954]	glycyl L-aspartic acid ChEBI	+	carbon source
[Ref.: #24954]	glycyl L-aspartic acid ChEBI	+	energy source
[Ref.: #24954]	glycyl-l-glutamate ChEBI	+	carbon source
[Ref.: #24954]	glycyl-l-glutamate ChEBI	+	energy source
[Ref.: #24954]	glyoxylate ChEBI	-	carbon source
[Ref.: #24954]	inosine ChEBI	+	carbon source
[Ref.: #24954]	inosine ChEBI	+	energy source
[Ref.: #24954]	L-alanine ChEBI	+	carbon source
[Ref.: #24954]	L-alanine ChEBI	+	energy source
[Ref.: #24954]	L-alanylglycine ChEBI	+	carbon source
[Ref.: #24954]	L-alanylglycine ChEBI	+	energy source
[Ref.: #24954]	L-arabinose ChEBI	-	builds acid from
[Ref.: #24954]	L-arginine ChEBI	-	carbon source
[Ref.: #24954]	L-asparagine ChEBI	+	carbon source
[Ref.: #24954]	L-asparagine ChEBI	+	energy source
[Ref.: #24954]	L-aspartate ChEBI	+	carbon source
[Ref.: #24954]	L-aspartate ChEBI	+	energy source
[Ref.: #24954]	L-fucose ChEBI	-	carbon source
[Ref.: #24954]	L-glutamate ChEBI	+	carbon source
[Ref.: #24954]	L-glutamate ChEBI	+	energy source
[Ref.: #24954]	L-glutamine ChEBI	+	carbon source
[Ref.: #24954]	L-glutamine ChEBI	+	energy source
[Ref.: #24954]	L-lyxose ChEBI	+	carbon source
[Ref.: #24954]	L-lyxose ChEBI	+	energy source
[Ref.: #24954]	L-malate ChEBI	+	carbon source
[Ref.: #24954]	L-malate ChEBI	+	energy source
[Ref.: #24954]	L-proline ChEBI	+	carbon source
[Ref.: #24954]	L-proline ChEBI	+	energy source
[Ref.: #24954]	L-rhamnose ChEBI	+	builds acid from
[Ref.: #24954]	L-rhamnose ChEBI	+	carbon source
[Ref.: #24954]	L-rhamnose ChEBI	+	energy source
[Ref.: #24954]	L-serine ChEBI	+	carbon source
[Ref.: #24954]	L-serine ChEBI	+	energy source
[Ref.: #24954]	L-threonine ChEBI	+	carbon source
[Ref.: #24954]	L-threonine ChEBI	+	energy source
[Ref.: #24954]	L-tryptophan ChEBI	+	carbon source
[Ref.: #24954]	L-tryptophan ChEBI	+	energy source
[Ref.: #24954]	lactate ChEBI	+	carbon source
[Ref.: #24954]	lactate ChEBI	+	energy source
[Ref.: #24954]	lactose ChEBI	-	builds acid from
[Ref.: #24954]	lysine ChEBI	-	carbon source
[Ref.: #24954]	malate ChEBI	+	carbon source
[Ref.: #24954]	malate ChEBI	+	energy source
[Ref.: #24954]	malonate ChEBI	-	carbon source
[Ref.: #24954]	maltose ChEBI	+	carbon source
[Ref.: #24954]	maltose ChEBI	+	energy source
[Ref.: #24954]	maltose ChEBI	+	builds acid from
[Ref.: #24954]	maltotriose ChEBI	+	carbon source
[Ref.: #24954]	maltotriose ChEBI	+	energy source
[Ref.: #24954]	mannitol ChEBI	+	builds acid from
[Ref.: #24954]	mannose ChEBI	+	builds acid from
[Ref.: #24954]	melibiose ChEBI	-	builds acid from
[Ref.: #24954]	meso-tartrate ChEBI	-	carbon source
[Ref.: #24954]	methyl alpha-D-galactoside ChEBI	-	carbon source
[Ref.: #24954]	methyl beta-D-glucopyranoside ChEBI	+	carbon source
[Ref.: #24954]	methyl beta-D-glucopyranoside ChEBI	+	energy source
[Ref.: #24954]	methyl pyruvate ChEBI	+	carbon source
[Ref.: #24954]	methyl pyruvate ChEBI	+	energy source
[Ref.: #24954]	monomethyl succinate ChEBI	+	carbon source
[Ref.: #24954]	monomethyl succinate ChEBI	+	energy source
[Ref.: #24954]	myo-inositol ChEBI	-	builds acid from
[Ref.: #24954]	myo-inositol ChEBI	-	carbon source
[Ref.: #24954]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #24954]	N-acetylglucosamine ChEBI	+	energy source
[Ref.: #24954]	nitrate ChEBI	+	reduction
[Ref.: #24954]	ornithine ChEBI	-	carbon source
[Ref.: #24954]	phenylacetate ChEBI	-	carbon source
[Ref.: #24954]	phenylalanine ChEBI	+	carbon source
[Ref.: #24954]	phenylalanine ChEBI	+	energy source
[Ref.: #24954]	phenylethylamine ChEBI	-	carbon source
[Ref.: #24954]	potassium gluconate ChEBI	+	carbon source
[Ref.: #24954]	potassium gluconate ChEBI	+	energy source
[Ref.: #24954]	propionate ChEBI	+	carbon source
[Ref.: #24954]	propionate ChEBI	+	energy source
[Ref.: #24954]	pyruvate ChEBI	+	carbon source
[Ref.: #24954]	pyruvate ChEBI	+	energy source
[Ref.: #24954]	raffinose ChEBI	-	builds acid from
[Ref.: #24954]	raffinose ChEBI	-	carbon source
[Ref.: #24954]	ribitol ChEBI	-	builds acid from
[Ref.: #24954]	sodium citrate ChEBI	-	carbon source
[Ref.: #24954]	succinate ChEBI	+	carbon source
[Ref.: #24954]	succinate ChEBI	+	energy source
[Ref.: #24954]	sucrose ChEBI	+	builds acid from
[Ref.: #24954]	sucrose ChEBI	+	carbon source
[Ref.: #24954]	sucrose ChEBI	+	energy source
[Ref.: #24954]	thymidine ChEBI	+	carbon source
[Ref.: #24954]	thymidine ChEBI	+	energy source
[Ref.: #24954]	trehalose ChEBI	+	builds acid from
[Ref.: #24954]	trehalose ChEBI	+	carbon source
[Ref.: #24954]	trehalose ChEBI	+	energy source
[Ref.: #24954]	tricarballylate ChEBI	-	carbon source
[Ref.: #24954]	tryptophan ChEBI	+	energy source
[Ref.: #24954]	tween 40 ChEBI	+	carbon source
[Ref.: #24954]	tween 40 ChEBI	+	energy source
[Ref.: #24954]	tween 80 ChEBI	+	carbon source
[Ref.: #24954]	tween 80 ChEBI	+	energy source
[Ref.: #24954]	tyramine ChEBI	-	carbon source
[Ref.: #24954]	urea ChEBI	-	hydrolysis
[Ref.: #24954]	urea ChEBI	-	carbon source
[Ref.: #24954]	uridine ChEBI	+	carbon source
[Ref.: #24954]	uridine ChEBI	+	energy source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #24954]		acetoin ChEBI	no
[Ref.: #24954]		indole ChEBI	yes

	Metabolite	Voges-Proskauer-test	Methylred-test	Indole test
[Ref.: #24954]	acetoin ChEBI	-
[Ref.: #24954]	glucose ChEBI		+
[Ref.: #24954]	indole ChEBI			+

	Enzyme	Enzyme activity	EC number
[Ref.: #24954]	arginine dihydrolase	-	3.5.3.6
[Ref.: #24954]	cytochrome oxidase	+	1.9.3.1
[Ref.: #24954]	DNase	+
[Ref.: #24954]	lysine decarboxylase	-	4.1.1.18
[Ref.: #24954]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #24954]	phenylalanine deaminase	+	4.3.1.5
[Ref.: #24954]	tryptophan deaminase	+	4.1.99.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24954]	Sample type/isolated from	river water
[Ref.: #24954]	Isolation date	1981

[Ref.: #118281]	Sample type/isolated from	Environment, River water
[Ref.: #118281]	Geographic location (country and/or sea, region)	Atlanta, Georgia
[Ref.: #118281]	Country	United States of America
[Ref.: #118281]	Country ISO 3 Code	USA
[Ref.: #118281]	Continent	North America
[Ref.: #118281]	Isolation date	2015-06-24
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#River (Creek)

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #118281]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24954]	16S rRNA	KJ807108		GenBank

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Vibrio cidicii 2756-81	GCA_009763805	complete	GenBank	1763883 tax ID	*
[Ref.: #66792]	Vibrio cidicii 2756-81	GCA_001597655	contig	GenBank	1763883 tax ID	*
[Ref.: #66792]	Vibrio cidicii 2756-81	2690315852	draft	JGI IMG/M	1763883 tax ID	*

[Ref.: #24954]

GC-content

47.9 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Vibrio cidicii 2756-81 NCBI: GCA_009763805.1
[Ref.: #69480]	motile	yes	92.332	yes
[Ref.: #69480]	flagellated	yes	90.599	no
[Ref.: #69480]	gram-positive	no	98.899	no
[Ref.: #69480]	anaerobic	no	96.329	no
[Ref.: #69480]	aerobic	yes	84.567	no
[Ref.: #69480]	halophile	no	57.327	no
[Ref.: #69480]	spore-forming	no	94.115	no
[Ref.: #69480]	glucose-util	yes	88.323	yes
[Ref.: #69480]	thermophile	no	99.242	no
[Ref.: #69480]	glucose-ferment	yes	87.853	yes

Availability in culture collections External links

[Ref.: #24954]

Culture collection no.

LMG 29267, CIP 111013

[Ref.: #91386]

SI-ID 412576

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Characterization of clinical and environmental isolates of Vibrio cidicii sp. nov., a close relative of Vibrio navarrensis.	Orata FD, Xu Y, Gladney LM, Rishishwar L, Case RJ, Boucher Y, Jordan IK, Tarr CL	Int J Syst Evol Microbiol	10.1099/ijsem.0.001327	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24954

F. D. X. Orata, Yue,Gladney, Lori M.,Rishishwar, Lavanya,Case, Rebecca J.,Boucher, Yan,Jordan, I. King,Tarr, Cheryl L.: Characterization of clinical and environmental isolates of Vibrio cidicii sp. nov., a close relative of Vibrio navarrensis. IJSEM 66: 4148 - 4155 2016 ( DOI 10.1099/ijsem.0.001327 , PubMed 27468862 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#91386

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID412576.1 )

#118281 Collection of Institut Pasteur ; Curators of the CIP; CIP 111013
* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Vibrio cidicii in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF