Name: Rhizobium altiplani BR 10423
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133176

Type strain:

Species: Rhizobium altiplani

Culture col. no.: BR 10423, HAMBI 3664

NCBI tax ID(s): 1864509 (species)

Section

Rhizobium altiplani BR 10423 is an aerobe, Gram-negative, motile bacterium that forms circular colonies and has a yellow pigmentation.

colony-forming
Gram-negative
motile
pigmented
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Rhizobiaceae*
	Genus	*Rhizobium*
	Species	**Rhizobium altiplani**
	Full Scientific Name (LPSN)	Rhizobium altiplani Baraúna et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #24953]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.997

[Ref.: #24953]	Cell length	1.5 µm

[Ref.: #24953]	Cell width	0.4 µm

[Ref.: #24953]	Cell shape	rod-shaped

[Ref.: #24953]	Motility	yes

[Ref.: #24953]	Flagellum arrangement	polar

[Ref.: #24953]	Colony size	3 mm
[Ref.: #24953]	Colony shape	circular
[Ref.: #24953]	Incubation period	4 days
[Ref.: #24953]	Cultivation medium used	YMA medium

[Ref.: #24953]	Pigment production	yes
[Ref.: #24953]	Pigmentation color	yellow

Information on culture and growth conditions Culture and growth conditions

[Ref.: #24953]

Culture medium

YMA medium

[Ref.: #24953]

Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #24953]			growth	12-35 °C
[Ref.: #24953]			optimum	28-30 °C

[Ref.: #24953]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #24953]			optimum	6.8-7.0
[Ref.: #24953]			growth	6.8-10.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #24953]

Oxygen tolerance

aerobe

[Ref.: #24953]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.997

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #24953]		NaCl		maximum	2	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #24953]	(-)-quinic acid ChEBI	+	carbon source
[Ref.: #24953]	alpha-D-glucose ChEBI	+	carbon source
[Ref.: #24953]	alpha-lactose ChEBI	+	carbon source
[Ref.: #24953]	bromosuccinate ChEBI	+	carbon source
[Ref.: #24953]	cellobiose ChEBI	+	carbon source
[Ref.: #24953]	cis-aconitate ChEBI	+	carbon source
[Ref.: #24953]	D-arabitol ChEBI	+	carbon source
[Ref.: #24953]	D-fructose ChEBI	+	carbon source
[Ref.: #24953]	D-galactose ChEBI	+	carbon source
[Ref.: #24953]	D-mannitol ChEBI	+	carbon source
[Ref.: #24953]	D-mannose ChEBI	+	carbon source
[Ref.: #24953]	D-psicose ChEBI	+	carbon source
[Ref.: #24953]	D-sorbitol ChEBI	+	carbon source
[Ref.: #24953]	dextrin ChEBI	+	carbon source
[Ref.: #24953]	esculin ChEBI	+	hydrolysis
[Ref.: #24953]	gamma-aminobutyric acid ChEBI	+	carbon source
[Ref.: #24953]	gelatin ChEBI	-	hydrolysis
[Ref.: #24953]	gentiobiose ChEBI	+	carbon source
[Ref.: #24953]	glucose ChEBI	-	fermentation
[Ref.: #24953]	glycerol ChEBI	+	carbon source
[Ref.: #24953]	hydroxyproline ChEBI	+	carbon source
[Ref.: #24953]	L-arabinose ChEBI	+	carbon source
[Ref.: #24953]	L-asparagine ChEBI	+	carbon source
[Ref.: #24953]	L-aspartate ChEBI	+	carbon source
[Ref.: #24953]	L-fucose ChEBI	+	carbon source
[Ref.: #24953]	L-glutamate ChEBI	+	carbon source
[Ref.: #24953]	L-histidine ChEBI	+	carbon source
[Ref.: #24953]	L-ornithine ChEBI	+	carbon source
[Ref.: #24953]	L-proline ChEBI	+	carbon source
[Ref.: #24953]	L-rhamnose ChEBI	+	carbon source
[Ref.: #24953]	lactate ChEBI	+	carbon source
[Ref.: #24953]	lactulose ChEBI	+	carbon source
[Ref.: #24953]	maltose ChEBI	+	carbon source
[Ref.: #24953]	melibiose ChEBI	+	carbon source
[Ref.: #24953]	methyl beta-D-glucopyranoside ChEBI	+	carbon source
[Ref.: #24953]	methyl pyruvate ChEBI	+	carbon source
[Ref.: #24953]	monomethyl succinate ChEBI	+	carbon source
[Ref.: #24953]	myo-inositol ChEBI	+	carbon source
[Ref.: #24953]	N-acetylgalactosamine ChEBI	+	carbon source
[Ref.: #24953]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #24953]	nitrate ChEBI	-	reduction
[Ref.: #24953]	raffinose ChEBI	+	carbon source
[Ref.: #24953]	ribitol ChEBI	+	carbon source
[Ref.: #24953]	sucrose ChEBI	+	carbon source
[Ref.: #24953]	trehalose ChEBI	+	carbon source
[Ref.: #24953]	turanose ChEBI	+	carbon source
[Ref.: #24953]	urocanic acid ChEBI	+	carbon source
[Ref.: #24953]	xylitol ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #24953]	arginine dihydrolase	-	3.5.3.6
[Ref.: #24953]	beta-galactosidase	+	3.2.1.23
[Ref.: #24953]	beta-glucosidase	+	3.2.1.21
[Ref.: #24953]	catalase	+	1.11.1.6
[Ref.: #24953]	tryptophan deaminase	-	4.1.99.1
[Ref.: #24953]	urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #69479]

Global distribution of 16S sequence KX022634 (>99% sequence identity) for Rhizobium from Microbeatlas

Aquatic Samples	5
Soil Samples	23
Animal Samples	2
Plant Samples	62
Total Samples	92

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24953]	16S rRNA	KX022634		GenBank

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Rhizobium altiplani BR 10423	GCA_001542405	scaffold	GenBank	1864509 tax ID	*
[Ref.: #66792]	Rhizobium sp. BR10423	1755240.3	wgs	PATRIC	1864509 tax ID	*
[Ref.: #66792]	Rhizobium altiplani BR10423	2744054510	draft	JGI IMG/M	1864509 tax ID	*

[Ref.: #24953]

GC-content

57.6 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Rhizobium altiplani BR 10423 NCBI: GCA_001542405.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Rhizobium altiplani BR 10423 NCBI: GCA_001542405.1
[Ref.: #69480]	flagellated	no	82.248	no
[Ref.: #69480]	gram-positive	no	97.793	no
[Ref.: #69480]	anaerobic	no	97.913	yes
[Ref.: #69480]	aerobic	yes	90.746	yes
[Ref.: #69480]	halophile	no	92.995	no
[Ref.: #69480]	spore-forming	no	93.455	yes
[Ref.: #69480]	glucose-util	yes	90.84	no
[Ref.: #69480]	motile	yes	89.688	yes
[Ref.: #69480]	thermophile	no	99.43	no
[Ref.: #69480]	glucose-ferment	no	92.122	yes

Availability in culture collections External links

[Ref.: #24953]

Culture collection no.

BR 10423, HAMBI 3664

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Rhizobium altiplani sp. nov., isolated from effective nodules on Mimosa pudica growing in untypically alkaline soil in central Brazil.	Barauna AC, Rouws LFM, Simoes-Araujo JL, Dos Reis Junior FB, Iannetta PPM, Maluk M, Goi SR, Reis VM, James EK, Zilli JE	Int J Syst Evol Microbiol	10.1099/ijsem.0.001322	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24953

A. C. R. Baraúna, Luc F. M.,Simoes-Araujo, Jean L.,dos Reis Junior, Fábio B.,Iannetta, Pietro P. M.,Maluk, Marta,Goi, Silvia R.,Reis, Veronica M.,James, Euan K.,Zilli, Jerri E.: Rhizobium altiplani sp. nov., isolated from effective nodules on Mimosa pudica growing in untypically alkaline soil in central Brazil. IJSEM 66: 4118 - 4124 2016 ( DOI 10.1099/ijsem.0.001322 , PubMed 27453319 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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