Name: Aurantimonas endophytica DSM 103570
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133164

Type strain:

Species: Aurantimonas endophytica

Culture col. no.: DSM 103570, CPCC 100904, KCTC 52296, EGI 6500337

Strain history: <- Wen-jun Li, Hong-fei Wang, School of Life Sciences, Sun Yat-Sen Univ., China

NCBI tax ID(s): 1522175 (species)

SI-ID 397998

DSM 103570

Other strains from Aurantimonas endophytica

A. endophytica

Section

Aurantimonas endophytica DSM 103570 is an aerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from surface-sterilized root of a halophyte, Anabasis elatior Schischk.

colony-forming
Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Aurantimonadaceae*
	Genus	*Aurantimonas*
	Species	**Aurantimonas endophytica**
	Full Scientific Name (LPSN)	Aurantimonas endophytica Liu et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #24952]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.993

[Ref.: #24952]	Cell length	1.0-1.12 µm

[Ref.: #24952]	Cell width	0.67-0.70 µm

[Ref.: #24952]	Cell shape	rod-shaped

[Ref.: #24952]	Motility	yes

[Ref.: #24952]	Colony color	orange
[Ref.: #24952]	Colony shape	circular
[Ref.: #24952]	Cultivation medium used	2216 agar medium

Information on culture and growth conditions Culture and growth conditions

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Culture medium

2216 agar medium

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Culture medium growth

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Culture medium

tripticase soy broth (TSB)

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Culture medium growth

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Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

		Temperature
[Ref.: #24952]	growth	5.0-35.0 °C
[Ref.: #24952]	optimum	30 °C
[Ref.: #42851]	growth	28 °C
[Ref.: #67771]	growth	28 °C

[Ref.: #24952]	Temperature range	mesophilic
[Ref.: #42851]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #24952]			optimum	7
[Ref.: #24952]			growth	6.0-9.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #24952]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #24952]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.983

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #24952]		NaCl		optimum	0.0-1.0	%
[Ref.: #24952]		NaCl		growth	0.0-6.0	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #24952]	adipate ChEBI	-	assimilation
[Ref.: #24952]	arabinose ChEBI	-	assimilation
[Ref.: #24952]	citrate ChEBI	-	assimilation
[Ref.: #24952]	decanoate ChEBI	-	assimilation
[Ref.: #24952]	esculin ChEBI	+	hydrolysis
[Ref.: #24952]	gelatin ChEBI	-	hydrolysis
[Ref.: #24952]	glucose ChEBI	-	fermentation
[Ref.: #24952]	glucose ChEBI	-	assimilation
[Ref.: #24952]	malate ChEBI	+	assimilation
[Ref.: #24952]	maltose ChEBI	-	assimilation
[Ref.: #24952]	mannitol ChEBI	+	assimilation
[Ref.: #24952]	mannose ChEBI	+	assimilation
[Ref.: #24952]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #24952]	nitrate ChEBI	-	reduction
[Ref.: #24952]	phenylacetate ChEBI	-	assimilation
[Ref.: #24952]	potassium gluconate ChEBI	-	assimilation
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production	Excretion
[Ref.: #24952]		indole ChEBI	no
[Ref.: #24952]		urea ChEBI	yes	yes

	Enzyme	Enzyme activity	EC number
[Ref.: #24952]	acid phosphatase	+	3.1.3.2
[Ref.: #24952]	alkaline phosphatase	+	3.1.3.1
[Ref.: #24952]	alpha-galactosidase	-	3.2.1.22
[Ref.: #24952]	alpha-glucosidase	-	3.2.1.20
[Ref.: #24952]	alpha-mannosidase	-	3.2.1.24
[Ref.: #24952]	arginine dihydrolase	-	3.5.3.6
[Ref.: #24952]	beta-D-fucosidase	-	3.2.1.38
[Ref.: #24952]	beta-galactosidase	-	3.2.1.23
[Ref.: #24952]	beta-glucosidase	-	3.2.1.21
[Ref.: #24952]	beta-glucuronidase	-	3.2.1.31
[Ref.: #24952]	catalase	+	1.11.1.6
[Ref.: #24952]	chymotrypsin	-	3.4.4.5
[Ref.: #24952]	cystine arylamidase	-	3.4.11.3
[Ref.: #24952]	cytochrome oxidase	+	1.9.3.1
[Ref.: #24952]	esterase (C 4)	+
[Ref.: #24952]	esterase lipase (C 8)	+
[Ref.: #24952]	leucine arylamidase	+	3.4.11.1
[Ref.: #24952]	lipase (C 14)	-
[Ref.: #24952]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #24952]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #24952]	trypsin	-	3.4.21.4
[Ref.: #24952]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24952]	Sample type/isolated from	surface-sterilized root of a halophyte, Anabasis elatior (C. A.Mey.) Schischk
[Ref.: #24952]	Geographic location (country and/or sea, region)	Urumqi, Xinjiang province
[Ref.: #24952]	Country	China
[Ref.: #24952]	Country ISO 3 Code	CHN
[Ref.: #24952]	Continent	Asia
[Ref.: #24952]	Enrichment culture	glycerol-asparagine agar
[Ref.: #24952]	Enrichment culture composition	L-asparagine 1.0 g, glycerol 1.0 g, K2HPO4 1.0 g, trace salt 1 ml, agar 15.0 g, distilled water 1000 ml, pH 7–7.2, supplemented with 3 % (w/v) NaCl
[Ref.: #24952]	Enrichment culture duration	14-42 days
[Ref.: #24952]	Enrichment culture temperature	30 ̊C
[Ref.: #24952]	Isolation/enrichment procedure	three-fold dilution method

[Ref.: #42851]	Sample type/isolated from	surface-sterilized healthy root of the halophyte Anabasis elatior (C. A. Mey.) Schischk
[Ref.: #42851]	Geographic location (country and/or sea, region)	Xinjiang province, Urumqi city

[Ref.: #67771]	Sample type/isolated from	From plant
[Ref.: #67771]	Geographic location (country and/or sea, region)	Xinjiang Province
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host	#Plants	#Shrub (Scrub)
#Host Body-Site	#Plant	#Root (Rhizome)
#Host Body-Site	#Plant	#Sterilized plant part

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

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Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #42851]	Aurantimonas endophytica strain EGI 6500337 16S ribosomal RNA gene, partial sequence	KM114215	1475	ENA	1522175 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Aurantimonas endophytica DSM 103570	GCA_014196845	scaffold	GenBank	1522175 tax ID	*
[Ref.: #66792]	Aurantimonas endophytica strain DSM 103570	1522175.3	wgs	PATRIC	1522175 tax ID	*
[Ref.: #66792]	Aurantimonas endophytica DSM 103570	2830002646	draft	JGI IMG/M	1522175 tax ID	*
[Ref.: #66792]	Aurantimonas endophytica KCTC 52296	GCA_024105745	scaffold	GenBank	1522175 tax ID	*

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GC-content

66.8 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Aurantimonas endophytica DSM 103570 NCBI: GCA_014196845.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Aurantimonas endophytica DSM 103570 NCBI: GCA_014196845.1
[Ref.: #69480]	flagellated	no	52.296	no
[Ref.: #69480]	gram-positive	no	97.74	yes
[Ref.: #69480]	anaerobic	no	97.48	yes
[Ref.: #69480]	aerobic	yes	91.118	yes
[Ref.: #69480]	halophile	no	68.913	no
[Ref.: #69480]	spore-forming	no	95.986	yes
[Ref.: #69480]	glucose-util	yes	87.536	yes
[Ref.: #69480]	thermophile	no	98.292	no
[Ref.: #69480]	motile	yes	89.791	no
[Ref.: #69480]	glucose-ferment	no	91.935	yes

Availability in culture collections External links

[Ref.: #42851]

Culture collection no.

DSM 103570, CPCC 100904, KCTC 52296, EGI 6500337

[Ref.: #91385]

SI-ID 397998

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Aurantimonas endophytica sp. nov., a novel endophytic bacterium isolated from roots of Anabasis elatior (C. A. Mey.) Schischk.	Liu BB, Wang HF, Li QL, Zhou XK, Zhang YG, Xiao M, Li QQ, Zhang W, Li WJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.001320	2016	*
Phylogeny	Aurantimonas aggregata sp. nov., isolated from deep-sea sediment.	Li AZ, Lin LZ, Zhang MX, Zhu HH	Int J Syst Evol Microbiol	10.1099/ijsem.0.002413	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24952

B.-B. W. Liu, Hong-Fei,Li, Qiu-Li,Zhou, Xing-Kui,Zhang, Yong-Guang,Xiao, Min,Li, Qing-Qing,Zhang, Wei,Li, Wen-Jun: Aurantimonas endophytica sp. nov., a novel endophytic bacterium isolated from roots of Anabasis elatior (C. A. Mey.) Schischk. IJSEM 66: 4112 - 4117 2016 ( DOI 10.1099/ijsem.0.001320 , PubMed 27453213 )

#42851

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 103570

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#91385

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID397998.1 )

* These data were automatically processed and therefore are not curated

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