Name: Agathobaculum desmolans ATCC 43058
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133155

Type strain:

Species: Agathobaculum desmolans

Culture col. no.: ATCC 43058, CCUG 27818, JCM 6566

NCBI tax ID(s): 1408437 (strain), 39484 (species)

SI-ID 343336

ATCC 43058, CCUG 27818, JCM 6566, VTT E-062954

Section

Agathobaculum desmolans ATCC 43058 is an obligate anaerobe, mesophilic, Gram-positive bacterium that was isolated from cat faeces samples.

Gram-positive
motile
mesophilic
obligate anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Oscillospiraceae*
	Genus	*Agathobaculum*
	Species	**Agathobaculum desmolans**
	Full Scientific Name (LPSN)	Agathobaculum desmolans (Morris et al. 1986) Ahn et al. 2016

	Synonym	Butyricicoccus desmolans
	Synonym	Eubacterium desmolans

Information on morphological and physiological properties Morphology

[Ref.: #43140]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %99.999

[Ref.: #43140]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #43140]			optimum	37 °C
[Ref.: #43140]			growth	35-40 °C

[Ref.: #43140]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #43140]			optimum	7
[Ref.: #43140]			growth	6-8

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43140]	Oxygen tolerance	obligate anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %99.483

[Ref.: #69481]	Ability of spore formation	no Confidence in %98
[Ref.: #69480]	Ability of spore formation	no Confidence in %95.952

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43140]		NaCl		maximum	1	%(w/v)
[Ref.: #43140]		NaCl		optimum	0	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43140]	cellobiose ChEBI	+	builds acid from
[Ref.: #43140]	D-glucose ChEBI	+	builds acid from
[Ref.: #43140]	D-mannitol ChEBI	+	builds acid from
[Ref.: #43140]	D-mannose ChEBI	+	builds acid from
[Ref.: #43140]	D-sorbitol ChEBI	-	builds acid from
[Ref.: #43140]	D-trehalose ChEBI	+	builds acid from
[Ref.: #43140]	D-xylose ChEBI	+	builds acid from
[Ref.: #43140]	esculin ferric citrate	+	hydrolysis
[Ref.: #43140]	gelatin ChEBI	-	hydrolysis
[Ref.: #43140]	glycerol ChEBI	-	builds acid from
[Ref.: #43140]	L-arabinose ChEBI	+	builds acid from
[Ref.: #43140]	L-rhamnose ChEBI	+	builds acid from
[Ref.: #43140]	L-tryptophan ChEBI	-	hydrolysis
[Ref.: #43140]	lactose ChEBI	+	builds acid from
[Ref.: #43140]	maltose ChEBI	+	builds acid from
[Ref.: #43140]	melezitose ChEBI	+	builds acid from
[Ref.: #43140]	raffinose ChEBI	-	builds acid from
[Ref.: #43140]	salicin ChEBI	+	builds acid from
[Ref.: #43140]	sucrose ChEBI	+	builds acid from
[Ref.: #43140]	urea ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43140]		acetate ChEBI	yes

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43140]	Sample type/isolated from	cat faeces samples
* marker position based on {}

Isolation sources categories

#Host	#Mammals	#Felidae (Cat)
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43140]	16S rRNA gene sequences	L34618	1469	ENA	1408437 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Agathobaculum desmolans ATCC 43058	GCA_000701665	scaffold	GenBank	1408437 tax ID	*
[Ref.: #66792]	Agathobaculum desmolans ATCC 43058	1408437.6	wgs	PATRIC	1408437 tax ID	*
[Ref.: #66792]	Eubacterium desmolans ATCC 43058	1408437.3	wgs	PATRIC	1408437 tax ID	*
[Ref.: #66792]	Agathobaculum desmolans ATCC 43058	2561511082	draft	JGI IMG/M	1408437 tax ID	*

[Ref.: #43140]

GC-content

48.5 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Agathobaculum desmolans ATCC 43058 ATCC 43058 NCBI: GCA_000701665.1
[Ref.: #69481]	spore-forming	no	98	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Agathobaculum desmolans ATCC 43058 ATCC 43058 NCBI: GCA_000701665.1
[Ref.: #69480]	motile	yes	74.401	no
[Ref.: #69480]	flagellated	no	63.213	no
[Ref.: #69480]	gram-positive	yes	91.045	yes
[Ref.: #69480]	anaerobic	yes	99.326	yes
[Ref.: #69480]	halophile	no	95.133	no
[Ref.: #69480]	spore-forming	no	50.683	no
[Ref.: #69480]	thermophile	no	97.513	no
[Ref.: #69480]	glucose-util	yes	86.26	no
[Ref.: #69480]	aerobic	no	97.551	yes
[Ref.: #69480]	glucose-ferment	yes	70.526	no

Availability in culture collections External links

[Ref.: #24928]

Culture collection no.

ATCC 43058, CCUG 27818, JCM 6566

[Ref.: #91382]

SI-ID 343336

Literature:

Topic	Title	Authors	Journal	DOI	Year
Enzymology	Structural and biochemical characterization of 20beta-hydroxysteroid dehydrogenase from Bifidobacterium adolescentis strain L2-32.	Doden HL, Pollet RM, Mythen SM, Wawrzak Z, Devendran S, Cann I, Koropatkin NM, Ridlon JM	J Biol Chem	10.1074/jbc.RA119.009390	2019	*
Metabolism	Identification and characterization of a 20beta-HSDH from the anaerobic gut bacterium Butyricicoccus desmolans ATCC 43058.	Devendran S, Mendez-Garcia C, Ridlon JM	J Lipid Res	10.1194/jlr.M074914	2017	*
Phylogeny	Agathobaculum butyriciproducens gen. nov. sp. nov., a strict anaerobic, butyrate-producing gut bacterium isolated from human faeces and reclassification of Eubacterium desmolans as Agathobaculum desmolans comb. nov.	Ahn S, Jin TE, Chang DH, Rhee MS, Kim HJ, Lee SJ, Park DS, Kim BC	Int J Syst Evol Microbiol	10.1099/ijsem.0.001195	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24928

T. W. Takada, Koichi,Makino, Hiroshi,Kushiro, Akira: Reclassification of Eubacterium desmolans as Butyricicoccus desmolans comb. nov., and description of Butyricicoccus faecihominis sp. nov., a butyrate-producing bacterium from human faeces. IJSEM 66: 4125 - 4131 2016 ( DOI 10.1099/ijsem.0.001323 , PubMed 27453394 )

#43140

Sharon Ahn, Tae-Eun Jin, Dong-Ho Chang, Moon-Soo Rhee, Hyun Ju Kim, Sang Jun Lee, Doo-Sang Park and Byoung-Chan Kim: Agathobaculum butyriciproducens gen. nov. sp. nov., a strict anaerobic, butyrate-producing gut bacterium isolated from human faeces and reclassification of Eubacterium desmolans as Agathobaculum desmolans comb. nov.. IJSEM 66: 3656 - 3661 2016 ( DOI 10.1099/ijsem.0.001195 , PubMed 27334534 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#91382

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID343336.1 )

* These data were automatically processed and therefore are not curated

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Agathobaculum desmolans ATCC 43058 ATCC 43058

Agathobaculum desmolans ATCC 43058 ATCC 43058

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