Name: Pontibacillus salipaludis 9DM
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133153

Type strain:

Species: Pontibacillus salipaludis

Strain Designation: 9DM

Culture col. no.: KCTC 33742, LMG 29102, CGMCC 1.15353

Strain history: <- S. Vishnuvardhan Reddy, Mahatma Gandhi Univ.

NCBI tax ID(s): 1697394 (species)

Section

Pontibacillus salipaludis 9DM is a facultative anaerobe, spore-forming, Gram-positive bacterium that forms circular colonies and was isolated from sediment sample of a salt; pan.

colony-forming
Gram-positive
motile
rod-shaped
spore-forming
facultative anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Bacillaceae*
	Genus	*Pontibacillus*
	Species	**Pontibacillus salipaludis**
	Full Scientific Name (LPSN)	Pontibacillus salipaludis Sultanpuram et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #24924]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #24924]	Cell length	1.0-1.6 µm

[Ref.: #24924]	Cell width	0.3-0.9 µm

[Ref.: #24924]	Cell shape	rod-shaped

[Ref.: #24924]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %95.698

[Ref.: #24924]	Flagellum arrangement	peritrichous

[Ref.: #24924]	Colony size	0.8-1.9 mm
[Ref.: #24924]	Colony color	orange
[Ref.: #24924]	Colony shape	circular
[Ref.: #24924]	Incubation period	3 days
[Ref.: #24924]	Cultivation medium used	Zobell marine agar 2216 (HiMedia)

Information on culture and growth conditions Culture and growth conditions

[Ref.: #24924]

Culture medium

Zobell marine agar 2216 (HiMedia)

[Ref.: #24924]

Culture medium growth

		Temperature
[Ref.: #24924]	growth	16-45 °C
[Ref.: #24924]	optimum	37 °C
[Ref.: #67771]	growth	37 °C

[Ref.: #24924]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #24924]			optimum	7.0-8.0
[Ref.: #24924]			growth	6.0-9.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #24924]	Oxygen tolerance	facultative anaerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #24924]	Spore description	ellipsoidal endospores at the subterminal end with few swollen sporangia
[Ref.: #24924]	Type of spore	endospore
[Ref.: #24924]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

	Salt		Salt conc.
[Ref.: #24924]	NaCl	minimum	1	%(w/v)
[Ref.: #24924]	NaCl	optimum	2-3	%(w/v)
[Ref.: #24924]	NaCl	maximum	19	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #24924]	ammonium chloride ChEBI	-	growth
[Ref.: #24924]	arabinose ChEBI	-	carbon source
[Ref.: #24924]	aspartate ChEBI	-	growth
[Ref.: #24924]	casein	-	hydrolysis
[Ref.: #24924]	cellobiose ChEBI	-	carbon source
[Ref.: #24924]	D-fructose ChEBI	-	builds acid from
[Ref.: #24924]	D-glucose ChEBI	-	builds acid from
[Ref.: #24924]	D-mannose ChEBI	+	builds acid from
[Ref.: #24924]	D-ribose ChEBI	-	builds acid from
[Ref.: #24924]	esculin ChEBI	-	hydrolysis
[Ref.: #24924]	fructose ChEBI	-	carbon source
[Ref.: #24924]	galactose ChEBI	+	builds acid from
[Ref.: #24924]	gelatin ChEBI	+	hydrolysis
[Ref.: #24924]	glutamate ChEBI	+	nitrogen source
[Ref.: #24924]	glycerol ChEBI	-	builds acid from
[Ref.: #24924]	inulin ChEBI	+	builds acid from
[Ref.: #24924]	inulin ChEBI	+	builds gas from
[Ref.: #24924]	lactose ChEBI	-	carbon source
[Ref.: #24924]	maltose ChEBI	-	carbon source
[Ref.: #24924]	maltose ChEBI	-	builds acid from
[Ref.: #24924]	mannitol ChEBI	-	carbon source
[Ref.: #24924]	mannose ChEBI	+	builds acid from
[Ref.: #24924]	mannose ChEBI	+	builds gas from
[Ref.: #24924]	melibiose ChEBI	+	builds acid from
[Ref.: #24924]	melibiose ChEBI	+	builds gas from
[Ref.: #24924]	myo-inositol ChEBI	-	carbon source
[Ref.: #24924]	nitrate ChEBI	-	growth
[Ref.: #24924]	nitrite ChEBI	-	growth
[Ref.: #24924]	raffinose ChEBI	-	carbon source
[Ref.: #24924]	raffinose ChEBI	-	builds acid from
[Ref.: #24924]	rhamnose ChEBI	+	builds acid from
[Ref.: #24924]	rhamnose ChEBI	+	builds gas from
[Ref.: #24924]	salicin ChEBI	-	carbon source
[Ref.: #24924]	sorbitol ChEBI	+	builds acid from
[Ref.: #24924]	sorbitol ChEBI	+	builds gas from
[Ref.: #24924]	starch ChEBI	-	hydrolysis
[Ref.: #24924]	sucrose ChEBI	-	carbon source
[Ref.: #24924]	sucrose ChEBI	-	builds acid from
[Ref.: #24924]	trehalose ChEBI	-	carbon source
[Ref.: #24924]	trehalose ChEBI	-	builds acid from
[Ref.: #24924]	tween 80 ChEBI	-	hydrolysis
[Ref.: #24924]	tyrosine ChEBI	+	nitrogen source
[Ref.: #24924]	urea ChEBI	+	nitrogen source
[Ref.: #24924]	xylose ChEBI	+	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #24924]	acid phosphatase	+	3.1.3.2
[Ref.: #24924]	acid phosphatase	-	3.1.3.2
[Ref.: #24924]	alkaline phosphatase	-	3.1.3.1
[Ref.: #24924]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #24924]	alpha-galactosidase	-	3.2.1.22
[Ref.: #24924]	alpha-glucosidase	+	3.2.1.20
[Ref.: #24924]	alpha-mannosidase	-	3.2.1.24
[Ref.: #24924]	beta-galactosidase	+	3.2.1.23
[Ref.: #24924]	beta-glucosidase	-	3.2.1.21
[Ref.: #24924]	beta-glucuronidase	-	3.2.1.31
[Ref.: #24924]	cystine arylamidase	-	3.4.11.3
[Ref.: #24924]	esterase (C 4)	+
[Ref.: #24924]	esterase lipase (C 8)	+
[Ref.: #24924]	leucine arylamidase	-	3.4.11.1
[Ref.: #24924]	lipase (C 14)	-
[Ref.: #24924]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #24924]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #24924]	trypsin	-	3.4.21.4
[Ref.: #24924]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24924]	Sample type/isolated from	sediment sample of a salt pan
[Ref.: #24924]	Geographic location (country and/or sea, region)	Tuticorin, Tamil Nadu
[Ref.: #24924]	Country	India
[Ref.: #24924]	Country ISO 3 Code	IND
[Ref.: #24924]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From tuticorn salr pans
[Ref.: #67771]	Country	India
[Ref.: #67771]	Country ISO 3 Code	IND
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Sediment
#Condition	#Saline	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LN872943 (>99% sequence identity) for Pontibacillus from Microbeatlas

Aquatic Samples	25
Soil Samples	29
Animal Samples	40
Plant Samples	7
Total Samples	101

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24924]	Pontibacillus sp. 9DM partial 16S rRNA gene, isolate 9DM	LN872943	1476	GenBank	1697394 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Pontibacillus salipaludis CGMCC 1.15353	GCA_014642405	scaffold	GenBank	1697394 tax ID	*
[Ref.: #66792]	Pontibacillus salipaludis strain CGMCC 1.15353	1697394.3	wgs	PATRIC	1697394 tax ID	*

[Ref.: #24924]

GC-content

41.4-41.6 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Pontibacillus salipaludis CGMCC 1.15353 NCBI: GCA_014642405.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pontibacillus salipaludis CGMCC 1.15353 NCBI: GCA_014642405.1
[Ref.: #69480]	flagellated	yes	89.727	no
[Ref.: #69480]	gram-positive	yes	89.861	yes
[Ref.: #69480]	anaerobic	no	98.415	no
[Ref.: #69480]	aerobic	yes	94.141	no
[Ref.: #69480]	halophile	yes	91.548	no
[Ref.: #69480]	spore-forming	yes	93.33	yes
[Ref.: #69480]	glucose-util	yes	88.089	no
[Ref.: #69480]	thermophile	no	96.721	no
[Ref.: #69480]	motile	yes	90.645	yes
[Ref.: #69480]	glucose-ferment	no	88.303	no

Availability in culture collections External links

[Ref.: #24924]

Culture collection no.

KCTC 33742, LMG 29102, CGMCC 1.15353

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pontibacillus salipaludis sp. nov., a slightly halophilic bacterium isolated from a salt pan.	Sultanpuram VR, Mothe T, Mohammed F, Chintalapati S, Chintalapati VR	Int J Syst Evol Microbiol	10.1099/ijsem.0.001281	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24924

V. R. M. Sultanpuram, Thirumala,Mohammed, Farooq,Chintalapati, Sasikala,Chintalapati, Venkata Ramana: Pontibacillus salipaludis sp. nov., a slightly halophilic bacterium isolated from a salt pan. IJSEM 66: 3884 - 3889 2016 ( DOI 10.1099/ijsem.0.001281 , PubMed 27381178 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Pontibacillus salipaludis CGMCC 1.15353

Pontibacillus salipaludis CGMCC 1.15353

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