Name: Salinicoccus amylolyticus JC304
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 133151

Type strain:

Species: Salinicoccus amylolyticus

Strain Designation: JC304

Culture col. no.: KCTC 33661, LMG 28757

Strain history: <- Ch. Sasikala, Jawaharlal Nehru Technological Univ., India

NCBI tax ID(s): 1671557 (species)

Special Collections

Section

Salinicoccus amylolyticus JC304 is an aerobe, Gram-positive, coccus-shaped bacterium that forms circular colonies and was isolated from salt pan along a coast.

coccus-shaped
colony-forming
Gram-positive
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Staphylococcaceae*
	Genus	*Salinicoccus*
	Species	**Salinicoccus amylolyticus**
	Full Scientific Name (LPSN)	Salinicoccus amylolyticus Srinivas et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #24920]	Gram stain	positive
[Ref.: #67771]	Gram stain	positive

[Ref.: #24920]	Cell length	1.0-2.5 µm

[Ref.: #24920]	Cell shape	coccus-shaped
[Ref.: #67771]	Cell shape	coccus-shaped

[Ref.: #24920]	Motility	no

[Ref.: #24920]	Colony color	pink-red
[Ref.: #24920]	Colony shape	circular
[Ref.: #24920]	Cultivation medium used	Marine agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #24920]

Culture medium

Marine agar (MA)

[Ref.: #24920]

Culture medium growth

		Temperature
[Ref.: #24920]	growth	15-40 °C
[Ref.: #24920]	optimum	37 °C
[Ref.: #67771]	growth	30 °C

	pH	Kind of pH		pH
[Ref.: #24920]			optimum	9
[Ref.: #24920]			growth	8.0-12.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67771]

Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #24920]		NaCl		maximum	25	%(w/v)
[Ref.: #24920]		NaCl		optimum	8	%(w/v)

[Ref.: #67771]

Observation

quinones: MK-6

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #24920]	casein	-	hydrolysis
[Ref.: #24920]	citrate ChEBI	-	carbon source
[Ref.: #24920]	D-fructose ChEBI	+	growth
[Ref.: #24920]	D-glucose ChEBI	+	growth
[Ref.: #24920]	dna ChEBI	-	hydrolysis
[Ref.: #24920]	galactose ChEBI	+	growth
[Ref.: #24920]	gelatin ChEBI	-	hydrolysis
[Ref.: #24920]	glucose ChEBI	-	fermentation
[Ref.: #24920]	inulin ChEBI	+	growth
[Ref.: #24920]	maltose ChEBI	+	growth
[Ref.: #24920]	mannitol ChEBI	+	growth
[Ref.: #24920]	melibiose ChEBI	+	growth
[Ref.: #24920]	myo-inositol ChEBI	+	growth
[Ref.: #24920]	nitrate ChEBI	-	reduction
[Ref.: #24920]	pyruvate ChEBI	+	growth
[Ref.: #24920]	rhamnose ChEBI	+	growth
[Ref.: #24920]	ribitol ChEBI	+	growth
[Ref.: #24920]	starch ChEBI	+	hydrolysis
[Ref.: #24920]	sucrose ChEBI	+	growth
[Ref.: #24920]	trehalose ChEBI	+	growth
[Ref.: #24920]	tryptophan ChEBI	-	energy source
[Ref.: #24920]	tween 80 ChEBI	-	hydrolysis
[Ref.: #24920]	urea ChEBI	-	hydrolysis
[Ref.: #24920]	xylose ChEBI	+	growth
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #24920]		acetoin ChEBI	no
[Ref.: #24920]		indole ChEBI	no

	Metabolite	Voges-Proskauer-test	Methylred-test	Indole test
[Ref.: #24920]	acetoin ChEBI	-
[Ref.: #24920]	glucose ChEBI		-
[Ref.: #24920]	indole ChEBI			-

	Enzyme	Enzyme activity	EC number
[Ref.: #24920]	catalase	+	1.11.1.6
[Ref.: #24920]	cytochrome oxidase	+	1.9.3.1
[Ref.: #24920]	tryptophan deaminase	-	4.1.99.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24920]	Sample type/isolated from	salt pan along a coast
[Ref.: #24920]	Geographic location (country and/or sea, region)	Nari, Bhavnagar coast, Gujarat
[Ref.: #24920]	Country	India
[Ref.: #24920]	Country ISO 3 Code	IND
[Ref.: #24920]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From sediment, salt pan
[Ref.: #67771]	Geographic location (country and/or sea, region)	Nari, Bhavnagar coast, Gujarat
[Ref.: #67771]	Country	India
[Ref.: #67771]	Country ISO 3 Code	IND
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Coast
#Condition	#Saline	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LN866629 (>99% sequence identity) for Salinicoccus from Microbeatlas

Aquatic Samples	87
Soil Samples	46
Animal Samples	303
Plant Samples	2
Total Samples	438

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24920]	Salinicoccus sp. JC304 partial 16S rRNA gene, strain JC304, isolate Gj12	LN866629	1413	GenBank ENA	1671557 tax ID

[Ref.: #24920]	GC-content	48 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67771]	GC-content	48.0 mol%

Availability in culture collections External links

[Ref.: #24920]

Culture collection no.

KCTC 33661, LMG 28757

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Salinicoccus amylolyticus sp. nov., isolated from a saltern.	Srinivas A, Divyasree B, Tushar L, Suresh G, Sasikala C, Ramana CV	Int J Syst Evol Microbiol	10.1099/ijsem.0.001270	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24920

A. D. Srinivas, B.,Tushar, L.,Suresh, G.,Sasikala, Ch.,Ramana, Ch. V.: Salinicoccus amylolyticus sp. nov., isolated from a saltern. IJSEM 66: 3814 - 3820 2016 ( DOI 10.1099/ijsem.0.001270 , PubMed 27381021 )

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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