Enterococcus saigonensis (VE80, JCM 31193, CCUG 68827)

Name: Enterococcus saigonensis (VE80, JCM 31193, CCUG 68827)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133150

Type strain

Strain Designation VE80

Culture col. no. VE80 JCM 31193 CCUG 68827 CCM 8834

NCBI tax ID(s) 1805431

Special Collections CCUG JCM Literature strains

History C. V. Dang; Inst. of Hyg. & Public Health, Vietnam; VE80.

Links

Enterococcus saigonensis VE80 is a facultative anaerobe, Gram-positive, sphere-shaped bacterium that forms circular colonies and was isolated from from retail chicken meat.

Gram-positive sphere-shaped colony-forming facultative anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 410921

LMG 31302,JCM 31193,CCUG 68827

@ref 20215

Last LPSN update 2026-02-09 11:31:53

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Lactobacillales

Family Enterococcaceae

Genus Enterococcus

Species Enterococcus saigonensis

Full scientific name Enterococcus saigonensis Harada et al. 2016

BacDive ID	Other strains from **Enterococcus saigonensis** (1)	Type strain
157032	E. saigonensis JCM 31194, CCUG 68828

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
24919	positive	sphere-shaped
24919		coccus-shaped
24919		ovoid-shaped
125438			90
125438	positive		91.622

Colony morphology

@ref	Type of hemolysis	Hemolysis ability	Colony size	Colony color	Colony shape	Incubation period	Medium used
24919	alpha	1	2-3 mm	milky	circular	2 days	TSA with 5 % sheep blood

Pigmentation

24919

Productionno

Culture and growth conditions

Culture medium

@ref	Name	Growth
24919	TSA with 5 % sheep blood

Culture temp

@ref	Growth	Type	Temperature (°C)
63527	positive	growth	37
67770	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
24919	facultative anaerobe
63527	microaerophile

Spore formation

24919

Spore formationno

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
24919	16808 ChEBI	2-dehydro-D-gluconate	+	builds acid from
24919	17426 ChEBI	5-dehydro-D-gluconate	-	builds acid from
24919	27613 ChEBI	amygdalin	+	builds acid from
24919	22599 ChEBI	arabinose	-	builds acid from
24919	18305 ChEBI	arbutin	+	builds acid from
24919	17057 ChEBI	cellobiose	+	builds acid from
24919	23456 ChEBI	cyclodextrin	-	builds acid from
24919	17108 ChEBI	D-arabinose	-	builds acid from
24919	18333 ChEBI	D-arabitol	-	builds acid from
24919	15824 ChEBI	D-fructose	+	builds acid from
24919	28847 ChEBI	D-fucose	-	builds acid from
24919	12936 ChEBI	D-galactose	+	builds acid from
24919	17634 ChEBI	D-glucose	+	builds acid from
24919	62318 ChEBI	D-lyxose	-	builds acid from
24919	16024 ChEBI	D-mannose	+	builds acid from
24919	17924 ChEBI	D-sorbitol	-	builds acid from
24919	16443 ChEBI	D-tagatose	+	builds acid from
24919	65327 ChEBI	D-xylose	-	builds acid from
24919	17113 ChEBI	erythritol	-	builds acid from
24919	4853 ChEBI	esculin	+	builds acid from
24919	16813 ChEBI	galactitol	-	builds acid from
24919	28066 ChEBI	gentiobiose	+	builds acid from
24919	24265 ChEBI	gluconate	-	builds acid from
24919	15978 ChEBI	glycerol 3-phosphate	+	builds acid from
24919	28087 ChEBI	glycogen	-	builds acid from
24919	606565 ChEBI	hippurate	-	hydrolysis
24919	15443 ChEBI	inulin	-	builds acid from
24919	18403 ChEBI	L-arabitol	-	builds acid from
24919	18287 ChEBI	L-fucose	-	builds acid from
24919	62345 ChEBI	L-rhamnose	-	builds acid from
24919	65328 ChEBI	L-xylose	-	builds acid from
24919	17716 ChEBI	lactose	+	builds acid from
24919	17306 ChEBI	maltose	+	builds acid from
24919	29864 ChEBI	mannitol	-	builds acid from
24919	6731 ChEBI	melezitose	+	builds acid from
24919	28053 ChEBI	melibiose	+	builds acid from
24919	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from
24919	320055 ChEBI	methyl beta-D-glucopyranoside	+	builds acid from
24919	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from
24919	17268 ChEBI	myo-inositol	-	builds acid from
24919	506227 ChEBI	N-acetylglucosamine	+	builds acid from
24919	27941 ChEBI	pullulan	-	builds acid from
24919	16634 ChEBI	raffinose	+	builds acid from
24919	15963 ChEBI	ribitol	-	builds acid from
24919	33942 ChEBI	ribose	+	builds acid from
24919	17814 ChEBI	salicin	+	builds acid from
24919	27922 ChEBI	sorbose	-	builds acid from
24919	28017 ChEBI	starch	+	builds acid from
24919	17992 ChEBI	sucrose	+	builds acid from
24919	27082 ChEBI	trehalose	+	builds acid from
24919	32528 ChEBI	turanose	-	builds acid from
24919	17151 ChEBI	xylitol	-	builds acid from

Antibiotic resistance

@ref	ChEBI	Metabolite	Is sensitive	Is resistant
24919	29687	teicoplanin
24919	28001	vancomycin

Metabolite production

@ref	Chebi-ID	Metabolite	Production
24919	15688 ChEBI	acetoin

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test
24919	15688 ChEBI	acetoin	+

Enzymes

@ref	Value	Activity	Ec
24919	alkaline phosphatase	-	3.1.3.1
24919	alpha-galactosidase	+	3.2.1.22
24919	arginine dihydrolase	+	3.5.3.6
24919	beta-galactosidase	-	3.2.1.23
24919	beta-glucosidase	+	3.2.1.21
24919	beta-glucuronidase	-	3.2.1.31
24919	beta-mannosidase	-	3.2.1.25
24919	catalase	-	1.11.1.6
24919	cytochrome oxidase	-	1.9.3.1
24919	glycyl tryptophan arylamidase	-
24919	N-acetyl-beta-glucosaminidase	-	3.2.1.52
24919	phenylalanine arylamidase	-
24919	pyrrolidonyl arylamidase	+	3.4.19.3
24919	urease	-	3.5.1.5

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Food production	#Meat
#Host	#Birds	#Chicken

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Sampling date
24919	from retail chicken meat	Ho Chi Minh	Vietnam	VNM	Asia
63527	Meat of chicken		Vietnam	VNM	Asia	2012-12-01
67770	Retail chicken meat in Ho Chi Minh		Vietnam	VNM	Asia

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1139711v1 assembly for Enterococcus saigonensis VE80	complete	GCA_011397115	1805431.3	2916550272	1805431	95.64

16S sequences

@ref	Description	Accession	Database
24919	Enterococcus saigonensis gene for 16S ribosomal RNA, partial sequence, strain: VE80	LC127059

GC content

@ref	GC-content (mol%)	Method
67770	36.8	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Enterococcus saigonensis strain VE80
PATRIC: 1805431.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	72.20	no
125439	motility	BacteriaNetⓘ	yes	69.70	no
125439	gram_stain	BacteriaNetⓘ	variable	74.50	no
125439	oxygen_tolerance	BacteriaNetⓘ	microaerophile	89.10	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Enterococcus saigonensis VE80
NCBI: GCA_011397115.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	91.62	no
125438	anaerobic	anaerobicⓘ	no	91.06	no
125438	aerobic	aerobicⓘ	no	96.54	yes
125438	spore-forming	spore-formingⓘ	no	82.81	yes
125438	thermophilic	thermophileⓘ	no	96.81	yes
125438	flagellated	motile2+ⓘ	no	90.00	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Enterococcus saigonensis sp. nov., isolated from retail chicken meat and liver.	Harada T, Dang VC, Nguyen DP, Nguyen TAD, Sakamoto M, Ohkuma M, Motooka D, Nakamura S, Uchida K, Jinnai M, Yonogi S, Kawahara R, Kanki M, Kawai T, Kumeda Y, Yamamoto Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.001264	2016

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#24919	T. D. Harada, Van Chinh,Nguyen, Do Phuc,Nguyen, Thi Anh Dao,Sakamoto, Mitsuo,Ohkuma, Moriya,Motooka, Daisuke,Nakamura, Shota,Uchida, Kotaro,Jinnai, Michio,Yonogi, Shinya,Kawahara, Ryuji,Kanki, Masashi,Kawai, Takao,Kumeda, Yuko,Yamamoto, Yoshimasa: Enterococcus saigonensis sp. nov., isolated from retail chicken meat and liver. IJSEM 66: 3779 - 3785 2016 ( DOI 10.1099/ijsem.0.001264 , PubMed 27374383 )
#63527	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 68827
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Enterococcus saigonensis (VE80, JCM 31193, CCUG 68827)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Antibiotic resistance

Metabolite production

Metabolite tests

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_011397115

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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