Name: Enterococcus saigonensis VE80
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133150

Type strain:

Species: Enterococcus saigonensis

Strain Designation: VE80

Culture col. no.: JCM 31193, CCUG 68827, CCM 8834

Strain history: C. V. Dang; Inst. of Hyg. & Public Health, Vietnam; VE80.

NCBI tax ID(s): 1805431 (species)

Other strains from Enterococcus saigonensis

E. saigonensis JCM 31194, CCUG 68828

Section

Enterococcus saigonensis VE80 is a facultative anaerobe, mesophilic, Gram-positive bacterium that forms circular colonies and was isolated from from retail chicken meat.

colony-forming
Gram-positive
sphere-shaped
facultative anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Enterococcaceae*
	Genus	*Enterococcus*
	Species	**Enterococcus saigonensis**
	Full Scientific Name (PNU)	Enterococcus saigonensis Harada et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #24919]	Gram stain	positive
[Ref.: #24919]	Cell shape	sphere-shaped
[Ref.: #24919]	Motility	no

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #24919]	Cell shape	coccus-shaped

[Ref.: #24919]	Cell shape	ovoid-shaped

[Ref.: #69480]	Motility	no Confidence in %92.044

[Ref.: #24919]	Type of hemolysis	alpha
[Ref.: #24919]	Hemolysis ability	+
[Ref.: #24919]	Colony size	2-3 mm
[Ref.: #24919]	Colony color	milky
[Ref.: #24919]	Colony shape	circular
[Ref.: #24919]	Incubation period	2 days
[Ref.: #24919]	Cultivation medium used	TSA with 5 % sheep blood

[Ref.: #24919]	Pigment production	no
[Ref.: #24919]	Pigment name	no pigments

Information on culture and growth conditions Culture and growth conditions

[Ref.: #24919]

Culture medium

TSA with 5 % sheep blood

[Ref.: #24919]

Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #63527]			growth	37 °C
[Ref.: #67770]			growth	37 °C

[Ref.: #63527]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #24919]	Oxygen tolerance	facultative anaerobe
[Ref.: #63527]	Oxygen tolerance	microaerophile

[Ref.: #24919]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.897

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #24919]	2-dehydro-D-gluconate ChEBI	+	builds acid from
[Ref.: #24919]	5-dehydro-D-gluconate ChEBI	-	builds acid from
[Ref.: #24919]	amygdalin ChEBI	+	builds acid from
[Ref.: #24919]	arabinose ChEBI	-	builds acid from
[Ref.: #24919]	arbutin ChEBI	+	builds acid from
[Ref.: #24919]	cellobiose ChEBI	+	builds acid from
[Ref.: #24919]	cyclodextrin ChEBI	-	builds acid from
[Ref.: #24919]	D-arabinose ChEBI	-	builds acid from
[Ref.: #24919]	D-arabitol ChEBI	-	builds acid from
[Ref.: #24919]	D-fructose ChEBI	+	builds acid from
[Ref.: #24919]	D-fucose ChEBI	-	builds acid from
[Ref.: #24919]	D-galactose ChEBI	+	builds acid from
[Ref.: #24919]	D-glucose ChEBI	+	builds acid from
[Ref.: #24919]	D-lyxose ChEBI	-	builds acid from
[Ref.: #24919]	D-mannose ChEBI	+	builds acid from
[Ref.: #24919]	D-sorbitol ChEBI	-	builds acid from
[Ref.: #24919]	D-tagatose ChEBI	+	builds acid from
[Ref.: #24919]	D-xylose ChEBI	-	builds acid from
[Ref.: #24919]	erythritol ChEBI	-	builds acid from
[Ref.: #24919]	esculin ChEBI	+	builds acid from
[Ref.: #24919]	galactitol ChEBI	-	builds acid from
[Ref.: #24919]	gentiobiose ChEBI	+	builds acid from
[Ref.: #24919]	gluconate ChEBI	-	builds acid from
[Ref.: #24919]	glycerol 3-phosphate ChEBI	+	builds acid from
[Ref.: #24919]	glycogen ChEBI	-	builds acid from
[Ref.: #24919]	hippurate ChEBI	-	hydrolysis
[Ref.: #24919]	inulin ChEBI	-	builds acid from
[Ref.: #24919]	L-arabitol ChEBI	-	builds acid from
[Ref.: #24919]	L-fucose ChEBI	-	builds acid from
[Ref.: #24919]	L-rhamnose ChEBI	-	builds acid from
[Ref.: #24919]	L-xylose ChEBI	-	builds acid from
[Ref.: #24919]	lactose ChEBI	+	builds acid from
[Ref.: #24919]	maltose ChEBI	+	builds acid from
[Ref.: #24919]	mannitol ChEBI	-	builds acid from
[Ref.: #24919]	melezitose ChEBI	+	builds acid from
[Ref.: #24919]	melibiose ChEBI	+	builds acid from
[Ref.: #24919]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from
[Ref.: #24919]	methyl beta-D-glucopyranoside ChEBI	+	builds acid from
[Ref.: #24919]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from
[Ref.: #24919]	myo-inositol ChEBI	-	builds acid from
[Ref.: #24919]	N-acetylglucosamine ChEBI	+	builds acid from
[Ref.: #24919]	pullulan ChEBI	-	builds acid from
[Ref.: #24919]	raffinose ChEBI	+	builds acid from
[Ref.: #24919]	ribitol ChEBI	-	builds acid from
[Ref.: #24919]	ribose ChEBI	+	builds acid from
[Ref.: #24919]	salicin ChEBI	+	builds acid from
[Ref.: #24919]	sorbose ChEBI	-	builds acid from
[Ref.: #24919]	starch ChEBI	+	builds acid from
[Ref.: #24919]	sucrose ChEBI	+	builds acid from
[Ref.: #24919]	trehalose ChEBI	+	builds acid from
[Ref.: #24919]	turanose ChEBI	-	builds acid from
[Ref.: #24919]	xylitol ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #24919]		teicoplanin ChEBI	yes
[Ref.: #24919]		vancomycin ChEBI		yes

	Metabolite production	Metabolite
[Ref.: #24919]		acetoin ChEBI

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #24919]		acetoin ChEBI	+

	Enzyme	Enzyme activity	EC number
[Ref.: #24919]	alkaline phosphatase	-	3.1.3.1
[Ref.: #24919]	alpha-galactosidase	+	3.2.1.22
[Ref.: #24919]	arginine dihydrolase	+	3.5.3.6
[Ref.: #24919]	beta-galactosidase	-	3.2.1.23
[Ref.: #24919]	beta-glucosidase	+	3.2.1.21
[Ref.: #24919]	beta-glucuronidase	-	3.2.1.31
[Ref.: #24919]	beta-mannosidase	-	3.2.1.25
[Ref.: #24919]	catalase	-	1.11.1.6
[Ref.: #24919]	cytochrome oxidase	-	1.9.3.1
[Ref.: #24919]	glycyl tryptophan arylamidase	-
[Ref.: #24919]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #24919]	phenylalanine arylamidase	-
[Ref.: #24919]	pyrrolidonyl arylamidase	+	3.4.19.3
[Ref.: #24919]	urease	-	3.5.1.5
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24919]	Sample type/isolated from	from retail chicken meat
[Ref.: #24919]	Geographic location (country and/or sea, region)	Ho Chi Minh
[Ref.: #24919]	Country	Vietnam
[Ref.: #24919]	Country ISO 3 Code	VNM
[Ref.: #24919]	Continent	Asia

[Ref.: #63527]	Sample type/isolated from	Meat of chicken
[Ref.: #63527]	Sampling date	2012-12-01
[Ref.: #63527]	Country	Vietnam
[Ref.: #63527]	Country ISO 3 Code	VNM
[Ref.: #63527]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Retail chicken meat in Ho Chi Minh
[Ref.: #67770]	Country	Vietnam
[Ref.: #67770]	Country ISO 3 Code	VNM
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Food production	#Meat
#Host	#Birds	#Chicken

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24919]	16S rRNA	LC127059		GenBank

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Enterococcus saigonensis VE80	GCA_011397115	complete	GenBank	1805431 tax ID	*
[Ref.: #66792]	Enterococcus saigonensis strain VE80	1805431.3	complete	PATRIC	1805431 tax ID	*
[Ref.: #66792]	Enterococcus saigonensis VE80	2916550272	complete	JGI IMG/M	1805431 tax ID	*

[Ref.: #67770]

GC-content

36.8 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Enterococcus saigonensis VE80 NCBI: GCA_011397115.1
[Ref.: #69480]	thermophile	no	99.921	no
[Ref.: #69480]	anaerobic	no	91.616	yes
[Ref.: #69480]	gram-positive	yes	100	yes
[Ref.: #69480]	spore-forming	no	99.897	yes
[Ref.: #69480]	motile	no	92.044	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Enterococcus saigonensis VE80 NCBI: GCA_011397115.1
[Ref.: #69481]	spore-forming	no	100	no

Availability in culture collections External links

[Ref.: #24919]

Culture collection no.

JCM 31193, CCUG 68827, CCM 8834

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Enterococcus saigonensis sp. nov., isolated from retail chicken meat and liver.	Harada T, Dang VC, Nguyen DP, Nguyen TAD, Sakamoto M, Ohkuma M, Motooka D, Nakamura S, Uchida K, Jinnai M, Yonogi S, Kawahara R, Kanki M, Kawai T, Kumeda Y, Yamamoto Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.001264	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24919

T. D. Harada, Van Chinh,Nguyen, Do Phuc,Nguyen, Thi Anh Dao,Sakamoto, Mitsuo,Ohkuma, Moriya,Motooka, Daisuke,Nakamura, Shota,Uchida, Kotaro,Jinnai, Michio,Yonogi, Shinya,Kawahara, Ryuji,Kanki, Masashi,Kawai, Takao,Kumeda, Yuko,Yamamoto, Yoshimasa: Enterococcus saigonensis sp. nov., isolated from retail chicken meat and liver. IJSEM 66: 3779 - 3785 2016 ( DOI 10.1099/ijsem.0.001264 , PubMed 27374383 )

#63527 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 68827

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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