Name: Porphyromonas loveana UQD444
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133139

Type strain:

Species: Porphyromonas loveana

Strain Designation: UQD444, MRK101, UQD 444

Culture col. no.: DSM 28520, NCTC 13658

Strain history: <- P. S. Bird, Univ. Queensland, Brisbane; UQD444 <- D. Mikkelsen

NCBI tax ID(s): 1884669 (species)

SI-ID 404330

DSM 28520

Section

Porphyromonas loveana UQD444 is an obligate anaerobe, mesophilic, Gram-negative animal pathogen that forms circular colonies and has a brown-black pigmentation.

colony-forming
Gram-negative
pigmented
rod-shaped
animal pathogen
mesophilic
obligate anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Bacteroidia*
	Order	*Bacteroidales*
	Family	*Porphyromonadaceae*
	Genus	*Porphyromonas*
	Species	**Porphyromonas loveana**
	Full Scientific Name (LPSN)	Porphyromonas loveana Bird et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #24905]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.985

[Ref.: #24905]	Cell shape	rod-shaped

[Ref.: #24905]	Motility	no

[Ref.: #24905]	Colony size	0.5-1.0 mm
[Ref.: #24905]	Colony color	grey
[Ref.: #24905]	Colony shape	circular
[Ref.: #24905]	Incubation period	2-7 days
[Ref.: #24905]	Cultivation medium used	Wilkens Chalgren agar with laked sheep blood

[Ref.: #24905]	Pigment production	yes
[Ref.: #24905]	Pigmentation color	brown-black

Information on culture and growth conditions Culture and growth conditions

[Ref.: #24905]

Culture medium

Wilkens Chalgren agar with laked sheep blood

[Ref.: #24905]

Culture medium growth

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Culture medium

CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

FASTIDIOUS ANAEROBE AGAR (DSMZ Medium 1203)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #64828]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #64828]			growth	37 °C

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Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #24905]	Oxygen tolerance	obligate anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %99.284

[Ref.: #24905]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.998

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68380]	arginine ChEBI	-	hydrolysis	* from API rID32A
[Ref.: #68380]	D-mannose ChEBI	-	fermentation	* from API rID32A
[Ref.: #24905]	indole ChEBI	+	fermentation
[Ref.: #68380]	L-glutamate ChEBI	-	degradation	* from API rID32A
[Ref.: #24905]	mannose ChEBI	+	fermentation
[Ref.: #68380]	nitrate ChEBI	-	reduction	* from API rID32A
[Ref.: #24905]	raffinose ChEBI	+	fermentation
[Ref.: #68380]	raffinose ChEBI	-	fermentation	* from API rID32A
[Ref.: #24905]	tryptophan ChEBI	+	energy source
[Ref.: #68380]	tryptophan ChEBI	+	energy source	* from API rID32A
[Ref.: #68380]	urea ChEBI	-	hydrolysis	* from API rID32A
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #24905]		indole ChEBI	yes
[Ref.: #68380]		indole ChEBI	yes	* from API rID32A

	Physiological tests	Metabolite	Indole test
[Ref.: #24905]		indole ChEBI	+
[Ref.: #68380]		indole ChEBI	+	* from API rID32A

	Enzyme	Enzyme activity	EC number
[Ref.: #24905]	6-phospho-beta-galactosidase	+	3.2.1.85
[Ref.: #24905]	acid phosphatase	+	3.1.3.2
[Ref.: #68380]	alanine arylamidase	+	3.4.11.2	* from API rID32A
[Ref.: #24905]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68380]	alkaline phosphatase	+	3.1.3.1	* from API rID32A
[Ref.: #24905]	alpha-arabinosidase	-	3.2.1.55
[Ref.: #68380]	alpha-arabinosidase	-	3.2.1.55	* from API rID32A
[Ref.: #24905]	alpha-fucosidase	-	3.2.1.51
[Ref.: #68380]	alpha-fucosidase	-	3.2.1.51	* from API rID32A
[Ref.: #24905]	alpha-galactosidase	-	3.2.1.22
[Ref.: #68380]	alpha-galactosidase	-	3.2.1.22	* from API rID32A
[Ref.: #24905]	alpha-glucosidase	-	3.2.1.20
[Ref.: #68380]	alpha-glucosidase	-	3.2.1.20	* from API rID32A
[Ref.: #24905]	arginine dihydrolase	-	3.5.3.6
[Ref.: #68380]	arginine dihydrolase	-	3.5.3.6	* from API rID32A
[Ref.: #68380]	beta-Galactosidase 6-phosphate	-		* from API rID32A
[Ref.: #24905]	beta-glucosidase	-	3.2.1.21
[Ref.: #68380]	beta-glucosidase	-	3.2.1.21	* from API rID32A
[Ref.: #24905]	beta-glucuronidase	-	3.2.1.31
[Ref.: #68380]	beta-glucuronidase	-	3.2.1.31	* from API rID32A
[Ref.: #24905]	catalase	+	1.11.1.6
[Ref.: #24905]	chymotrypsin	-	3.4.4.5
[Ref.: #24905]	esterase	+
[Ref.: #24905]	esterase lipase (C 8)	+
[Ref.: #24905]	glutamate decarboxylase	-	4.1.1.15
[Ref.: #68380]	glutamate decarboxylase	-	4.1.1.15	* from API rID32A
[Ref.: #24905]	glutamyl-glutamate arylamidase	+
[Ref.: #68380]	glutamyl-glutamate arylamidase	+		* from API rID32A
[Ref.: #68380]	glycin arylamidase	-		* from API rID32A
[Ref.: #68380]	histidine arylamidase	-		* from API rID32A
[Ref.: #24905]	L-arginine arylamidase	+
[Ref.: #24905]	leucine arylamidase	-	3.4.11.1
[Ref.: #68380]	leucine arylamidase	-	3.4.11.1	* from API rID32A
[Ref.: #24905]	leucyl glycin arylamidase	+	3.4.11.1
[Ref.: #68380]	leucyl glycin arylamidase	+	3.4.11.1	* from API rID32A
[Ref.: #24905]	lipase (C 14)	-
[Ref.: #24905]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #68380]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API rID32A
[Ref.: #24905]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #24905]	phenylalanine arylamidase	+
[Ref.: #24905]	phenylalanine arylamidase	-
[Ref.: #68380]	phenylalanine arylamidase	-		* from API rID32A
[Ref.: #24905]	proline-arylamidase	-	3.4.11.5
[Ref.: #68380]	proline-arylamidase	-	3.4.11.5	* from API rID32A
[Ref.: #24905]	pyroglutamic acid arylamidase	+
[Ref.: #68380]	serine arylamidase	-		* from API rID32A
[Ref.: #24905]	trypsin	+	3.4.21.4
[Ref.: #24905]	tryptophan deaminase	+	4.1.99.1
[Ref.: #68380]	tryptophan deaminase	+	4.1.99.1	* from API rID32A
[Ref.: #24905]	tyrosine arylamidase	-
[Ref.: #68380]	tyrosine arylamidase	-		* from API rID32A
[Ref.: #24905]	urease	-	3.5.1.5
[Ref.: #68380]	urease	-	3.5.1.5	* from API rID32A
	Only first 10 entries are displayed. Click here to see all.

API® rID32A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	alpha-Galactosidasealpha GAL	beta-Galactosidasebeta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha-Glucosidasealpha GLU	beta-Glucosidasebeta GLU	alpha-Arabinosidasealpha ARA	beta-Glucuronidasebeta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	Fermentation of D-mannoseMNE	Fermentation of raffinoseRAF	Glutamate decarboxylaseGDC	alpha-Fucosidasealpha FUC	Reduction of nitrateNIT	Indole productionIND	Alkaline phosphatasePAL	L-arginine arylamidaseArgA	Proline arylamidaseProA	Leucyl glycin arylamidaseLGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	Pyrrolidonyl arylamidasePyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
[Ref.: #64828]	13038	-	-	-	+/-	-	-	-	-	-	+	-	-	-	-	-	+	+	+/-	-	+	-	-	+/-	-	+	-	-	+	-
[Ref.: #64828]	12481	-	-	-	+/-	-	-	-	-	-	+	-	-	-	-	-	+	+	+/-	-	+	-	-	+/-	-	+	-	-	+	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24905]	Sample type/isolated from	musky rat kangaroo

[Ref.: #64828]	Sample type/isolated from	oral cavity of a musky rat kangaroo (Hypsiprymnodon moschatus)
[Ref.: #64828]	Geographic location (country and/or sea, region)	Queensland, Brisbane
[Ref.: #64828]	Country	Australia
[Ref.: #64828]	Country ISO 3 Code	AUS
[Ref.: #64828]	Continent	Australia and Oceania
* marker position based on {}

Isolation sources categories

#Host

#Mammals

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #64828]	Pathogenicity (animal)	yes, in single cases
[Ref.: #64828]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #64828]	Porphyromonas loveana strain UQD444 16S ribosomal RNA gene, partial sequence	EU012300	1492	ENA	1884669 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Porphyromonas loveana DSM 28520	GCA_003096695	scaffold	GenBank	1884669 tax ID	*
[Ref.: #66792]	Porphyromonas loveana strain DSM 28520	1884669.3	wgs	PATRIC	1884669 tax ID	*
[Ref.: #66792]	Porphyromonas loveana DSM 28520	2756170163	draft	JGI IMG/M	1884669 tax ID	*

[Ref.: #64828]

GC-content

50.2 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Porphyromonas loveana DSM 28520 NCBI: GCA_003096695.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Porphyromonas loveana DSM 28520 NCBI: GCA_003096695.1
[Ref.: #69480]	flagellated	no	97.26	yes
[Ref.: #69480]	gram-positive	no	96.874	yes
[Ref.: #69480]	anaerobic	yes	99.196	no
[Ref.: #69480]	halophile	no	81.515	no
[Ref.: #69480]	spore-forming	no	96.28	no
[Ref.: #69480]	glucose-util	yes	80.747	no
[Ref.: #69480]	aerobic	no	98.307	yes
[Ref.: #69480]	thermophile	no	98.778	no
[Ref.: #69480]	motile	no	90.819	yes
[Ref.: #69480]	glucose-ferment	no	53.541	no

Availability in culture collections External links

[Ref.: #64828]

Culture collection no.

DSM 28520, NCTC 13658

[Ref.: #91377]

SI-ID 404330

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Porphyromonas loveana sp. nov., isolated from the oral cavity of Australian marsupials.	Bird PS, Trott DJ, Mikkelsen D, Milinovich GJ, Hillman KM, Burrell PC, Blackall LL	Int J Syst Evol Microbiol	10.1099/ijsem.0.000898	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24905

P. S. T. Bird, Darren J.,Mikkelsen, Deirdre,Milinovich, Gabriel J.,Hillman, Kristine M.,Burrell, Paul C.,Blackall, Linda L.: Porphyromonas loveana sp. nov., isolated from the oral cavity of Australian marsupials. IJSEM 66: 3771 - 3778 2016 ( DOI 10.1099/ijsem.0.000898 , PubMed 27515974 )

#64828

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 28520

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68380

Automatically annotated from API rID32A .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#91377

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID404330.1 )

* These data were automatically processed and therefore are not curated

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Porphyromonas loveana DSM 28520

Porphyromonas loveana DSM 28520

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