Name: Nocardioides intraradicalis YIM DR1091
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133130

Type strain:

Species: Nocardioides intraradicalis

Culture col. no.: YIM DR1091, JCM 30632, CGMCC 4.7251

Strain history: W.-J. Li; Yunnan Inst. of Microbiol., Yunnan Univ., China; YIM DR1091.

NCBI tax ID(s): 1817596 (species)

Section

Nocardioides intraradicalis YIM DR1091 is an aerobe, Gram-positive, rod-shaped bacterium that forms circular colonies and was isolated from roots of Psammosilene tunicoides W. C. Wu et C. Y. Wu.

colony-forming
Gram-positive
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Propionibacteriales*
	Family	*Nocardioidaceae*
	Genus	*Nocardioides*
	Species	**Nocardioides intraradicalis**
	Full Scientific Name (LPSN)	Nocardioides intraradicalis Huang et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #24891]	Gram stain	positive

[Ref.: #24891]	Cell length	0.5-2.0 µm

[Ref.: #24891]	Cell width	0.4-0.6 µm

[Ref.: #24891]	Cell shape	rod-shaped

[Ref.: #24891]	Motility	no

[Ref.: #24891]	Colony color	white
[Ref.: #24891]	Colony shape	circular
[Ref.: #24891]	Incubation period	6 days
[Ref.: #24891]	Cultivation medium used	R2A agar (Reasoner's 2A agar)

Information on culture and growth conditions Culture and growth conditions

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Culture medium

Reasoner's 2A agar (R2A)

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Culture medium growth

		Temperature
[Ref.: #24891]	growth	15.0-30.0 °C
[Ref.: #24891]	optimum	28.0-30.0 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #24891]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #24891]			optimum	6.0-7.0
[Ref.: #24891]			growth	4.0-11.0

Information on physiology and metabolism Physiology and metabolism

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Oxygen tolerance

aerobe

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Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #24891]		NaCl		growth	<1.0	%(w/v)
[Ref.: #24891]		NaCl		growth	0.0-1.0	%(w/v)

[Ref.: #24891]	Murein short key	A41.01
[Ref.: #24891]	Murein types	A3gamma LL-Dpm-Gly

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Observation

quinones: MK-8(H₄)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #24891]	3-O-methyl-D-glucose ChEBI	+	carbon source
[Ref.: #24891]	4-aminobenzoate ChEBI	+	nitrogen source
[Ref.: #24891]	alanine ChEBI	+	nitrogen source
[Ref.: #24891]	butyrate ChEBI	+	carbon source
[Ref.: #24891]	cellulose ChEBI	-	hydrolysis
[Ref.: #24891]	D-fructose 6-phosphate ChEBI	+	carbon source
[Ref.: #24891]	D-fucose ChEBI	+	carbon source
[Ref.: #24891]	D-galactose ChEBI	+	carbon source
[Ref.: #24891]	D-glucose 6-phosphate ChEBI	+	carbon source
[Ref.: #24891]	D-mannitol ChEBI	+	carbon source
[Ref.: #24891]	D-sorbitol ChEBI	+	carbon source
[Ref.: #24891]	gelatin ChEBI	-	hydrolysis
[Ref.: #24891]	gentiobiose ChEBI	+	carbon source
[Ref.: #24891]	glycyl L-aspartic acid ChEBI	+	nitrogen source
[Ref.: #24891]	L-tryptophan ChEBI	+	nitrogen source
[Ref.: #24891]	nitrate ChEBI	+	reduction
[Ref.: #24891]	salicin ChEBI	+	carbon source
[Ref.: #24891]	starch ChEBI	-	hydrolysis
[Ref.: #24891]	tween 20 ChEBI	-	hydrolysis
[Ref.: #24891]	tween 40 ChEBI	-	hydrolysis
[Ref.: #24891]	tween 60 ChEBI	-	hydrolysis
[Ref.: #24891]	tween 80 ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #24891]	amikacin ChEBI	yes
[Ref.: #24891]	cefuroxime ChEBI	yes
[Ref.: #24891]	chloramphenicol ChEBI	yes
[Ref.: #24891]	ciprofloxacin ChEBI		yes
[Ref.: #24891]	erythromycin ChEBI	yes
[Ref.: #24891]	gentamicin ChEBI	yes
[Ref.: #24891]	norfloxacin ChEBI		yes
[Ref.: #24891]	novobiocin ChEBI		yes
[Ref.: #24891]	optochin ChEBI		yes
[Ref.: #24891]	oxacillin ChEBI	yes
[Ref.: #24891]	penicillin ChEBI	yes
[Ref.: #24891]	piperacillin ChEBI		yes
[Ref.: #24891]	polymyxin b ChEBI	yes
[Ref.: #24891]	sulfamethoxazole ChEBI		yes
[Ref.: #24891]	tetracycline ChEBI	yes
[Ref.: #24891]	vancomycin ChEBI	yes
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #24891]		hydrogen sulfide ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #24891]	acid phosphatase	+	3.1.3.2
[Ref.: #24891]	alkaline phosphatase	+	3.1.3.1
[Ref.: #24891]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #24891]	alpha-fucosidase	-	3.2.1.51
[Ref.: #24891]	alpha-galactosidase	-	3.2.1.22
[Ref.: #24891]	alpha-glucosidase	+	3.2.1.20
[Ref.: #24891]	alpha-mannosidase	-	3.2.1.24
[Ref.: #24891]	beta-galactosidase	+	3.2.1.23
[Ref.: #24891]	beta-glucosidase	+	3.2.1.21
[Ref.: #24891]	beta-glucuronidase	-	3.2.1.31
[Ref.: #24891]	catalase	+	1.11.1.6
[Ref.: #24891]	cystine arylamidase	-	3.4.11.3
[Ref.: #24891]	cytochrome oxidase	+	1.9.3.1
[Ref.: #24891]	esterase (C 4)	+
[Ref.: #24891]	esterase lipase (C 8)	+
[Ref.: #24891]	leucine arylamidase	+	3.4.11.1
[Ref.: #24891]	lipase (C 14)	-
[Ref.: #24891]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #24891]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #24891]	trypsin	+	3.4.21.4
[Ref.: #24891]	urease	-	3.5.1.5
[Ref.: #24891]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24891]	Sample type/isolated from	roots of Psammosilene tunicoides W. C. Wu et C. Y. Wu
[Ref.: #24891]	Geographic location (country and/or sea, region)	Gejiu, Yunnan
[Ref.: #24891]	Country	Republic of China
[Ref.: #24891]	Country ISO 3 Code	CHN
[Ref.: #24891]	Continent	Asia
[Ref.: #24891]	Enrichment culture	YECD (yeast extract-casein hydrolysate)
[Ref.: #24891]	Enrichment culture composition	containing (g l-1): yeast, 0.3; casein, 0.3; glucose, 0.3; bone meal, 0.3; agar 1.3; pH 6.5;supplemented with nalidixic acid (25 mg l-1) and nystatin (50 mg l-1)
[Ref.: #24891]	Enrichment culture duration	30 days
[Ref.: #24891]	Enrichment culture temperature	28 ̊C

[Ref.: #67770]	Sample type/isolated from	Roots of Psammosilene tunicoides W. C. Wu et C. Y. Wu from Gejiu
[Ref.: #67770]	Host species	Psammosilene tunicoides
[Ref.: #67770]	Geographic location (country and/or sea, region)	Yunnan
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Shrub (Scrub)
#Host Body-Site	#Plant	#Root (Rhizome)

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24891]	Nocardioides intraradicalis strain YIM DR1091 16S ribosomal RNA gene, partial sequence	KU940252	1520	GenBank	1817596 tax ID

[Ref.: #24891]

GC-content

74.6 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #24891]

Culture collection no.

YIM DR1091, JCM 30632, CGMCC 4.7251

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Nocardioides intraradicalis sp. nov., isolated from the roots of Psammosilene tunicoides W. C. Wu et C. Y. Wu.	Huang MJ, Huang HQ, Salam N, Xiao M, Duan YQ, Kim CJ, Li QQ, Chen W, Li WJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.001274	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24891

M.-J. H. Huang, Hai-Quan,Salam, Nimaichand,Xiao, Min,Duan, Yan-Qing,Kim, Chang-Jin,Li, Qing-Qing,Chen, Wei,Li, Wen-Jun: Nocardioides intraradicalis sp. nov., isolated from the roots of Psammosilene tunicoides W. C. Wu et C. Y. Wu. IJSEM 66: 3841 - 3847 2016 ( DOI 10.1099/ijsem.0.001274 , PubMed 27381405 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
* These data were automatically processed and therefore are not curated

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