Name: Flavobacterium arcticum SM1502
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133125

Type strain:

Species: Flavobacterium arcticum

Strain Designation: SM1502

Culture col. no.: KCTC 42668, CCTCC AB 2015346

NCBI tax ID(s): 1784713 (species)

Section

Flavobacterium arcticum SM1502 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from Arctic surface seawater.

colony-forming
Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Flavobacterium*
	Species	**Flavobacterium arcticum**
	Full Scientific Name (LPSN)	Flavobacterium arcticum Li et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #25248]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.994

[Ref.: #25248]	Cell length	0.8-1.5 µm

[Ref.: #25248]	Cell width	0.4-0.5 µm

[Ref.: #25248]	Cell shape	rod-shaped

[Ref.: #25248]	Motility	no

[Ref.: #25248]	Colony size	2.0-3.0 mm
[Ref.: #25248]	Colony color	yellow
[Ref.: #25248]	Colony shape	circular
[Ref.: #25248]	Incubation period	3 days
[Ref.: #25248]	Cultivation medium used	TYS agar

[Ref.: #25248]	Pigment production	no
[Ref.: #25248]	Pigment name	Flexirubin-type

Information on culture and growth conditions Culture and growth conditions

[Ref.: #25248]

Culture medium

TYS agar

[Ref.: #25248]

Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #25248]			growth	10-40 °C
[Ref.: #25248]			optimum	25 °C

[Ref.: #25248]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #25248]			optimum	7
[Ref.: #25248]			growth	6.0-7.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #25248]

Oxygen tolerance

aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.997

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #25248]		NaCl		growth	0-8.0	%(w/v)
[Ref.: #25248]		NaCl		optimum	0	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #25248]	adipate ChEBI	-	assimilation
[Ref.: #25248]	agar ChEBI	-	hydrolysis
[Ref.: #25248]	casein	+	hydrolysis
[Ref.: #25248]	D-glucose ChEBI	-	assimilation
[Ref.: #25248]	D-mannitol ChEBI	-	assimilation
[Ref.: #25248]	D-mannose ChEBI	-	assimilation
[Ref.: #25248]	decanoate ChEBI	-	assimilation
[Ref.: #25248]	dna ChEBI	-	hydrolysis
[Ref.: #25248]	egg yolk	-	hydrolysis
[Ref.: #25248]	esculin ChEBI	+	hydrolysis
[Ref.: #25248]	gluconate ChEBI	-	assimilation
[Ref.: #25248]	glucose ChEBI	-	builds acid from
[Ref.: #25248]	L-arabinose ChEBI	-	assimilation
[Ref.: #25248]	malate ChEBI	-	assimilation
[Ref.: #25248]	maltose ChEBI	-	assimilation
[Ref.: #25248]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #25248]	nitrate ChEBI	+	reduction
[Ref.: #25248]	phenylacetate ChEBI	-	assimilation
[Ref.: #25248]	sodium citrate ChEBI	-	assimilation
[Ref.: #25248]	starch ChEBI	-	hydrolysis
[Ref.: #25248]	tween 20 ChEBI	+	hydrolysis
[Ref.: #25248]	tween 40 ChEBI	+	hydrolysis
[Ref.: #25248]	tween 60 ChEBI	+	hydrolysis
[Ref.: #25248]	tween 80 ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #25248]	ampicillin ChEBI	yes	10	µg (disc)
[Ref.: #25248]	chloramphenicol ChEBI	yes	100	µg (disc)
[Ref.: #25248]	gentamicin ChEBI				yes	10	µg (disc)
[Ref.: #25248]	kanamycin ChEBI				yes	30	µg (disc)
[Ref.: #25248]	penicillin g ChEBI	yes	10	µg (disc)
[Ref.: #25248]	polymyxin b ChEBI				yes	300	Unit
[Ref.: #25248]	streptomycin ChEBI				yes	10
[Ref.: #25248]	tetracycline ChEBI	yes	30	µg (disc)
[Ref.: #25248]	vancomycin ChEBI	yes	30	µg (disc)

	Metabolite production	Metabolite	Production
[Ref.: #25248]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #25248]	acid phosphatase	+	3.1.3.2
[Ref.: #25248]	alkaline phosphatase	+	3.1.3.1
[Ref.: #25248]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #25248]	alpha-fucosidase	-	3.2.1.51
[Ref.: #25248]	alpha-galactosidase	-	3.2.1.22
[Ref.: #25248]	alpha-glucosidase	-	3.2.1.20
[Ref.: #25248]	alpha-mannosidase	-	3.2.1.24
[Ref.: #25248]	arginine dihydrolase	-	3.5.3.6
[Ref.: #25248]	beta-galactosidase	-	3.2.1.23
[Ref.: #25248]	beta-glucosidase	-	3.2.1.21
[Ref.: #25248]	beta-glucuronidase	-	3.2.1.31
[Ref.: #25248]	catalase	+	1.11.1.6
[Ref.: #25248]	cystine arylamidase	+	3.4.11.3
[Ref.: #25248]	cytochrome oxidase	+	1.9.3.1
[Ref.: #25248]	esterase (C 4)	+
[Ref.: #25248]	esterase Lipase (C 8)	+
[Ref.: #25248]	gelatinase	+
[Ref.: #25248]	leucine arylamidase	+	3.4.11.1
[Ref.: #25248]	lipase (C 14)	-
[Ref.: #25248]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #25248]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #25248]	trypsin	-	3.4.21.4
[Ref.: #25248]	urease	-	3.5.1.5
[Ref.: #25248]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #25248]

Fatty acid	Percentage	ECL
C15:0 iso	23.2
C17:1 iso ω9c	11.3
C15:1 iso G	10.9
C15:0	9.1
C17:0 iso 3OH	7.5
Unknown ECL 13.565	5.7	14
C16:1ω7c / iso15:0 2-OH	4.6
C15:0 iso 3OH	4
C15:0 anteiso	3.8
C13:0 iso	2.3
C15:1ω6c	1.9
C16:0 iso	1.7
C16:0 iso 3OH	1.6
C16:0	1.6
Unknown ECL 11.543	1.5	12
C16:0 3OH	1.2
C16:1 iso H	1
C13:1 at 12-13	0.7
C15:1 anteiso A	0.7
C17:1ω8c	0.6
C14:0 iso 3OH	0.5

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	biotin biosynthesis	100	4 of 4
[Ref.: #66794]	starch degradation	100	10 of 10
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	sulfopterin metabolism	100	4 of 4
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	vitamin K metabolism	100	5 of 5
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	lipid A biosynthesis	88.89	8 of 9
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	gluconeogenesis	87.5	7 of 8
[Ref.: #66794]	C4 and CAM-carbon fixation	87.5	7 of 8
[Ref.: #66794]	tetrahydrofolate metabolism	85.71	12 of 14
[Ref.: #66794]	propanol degradation	85.71	6 of 7
[Ref.: #66794]	photosynthesis	85.71	12 of 14
[Ref.: #66794]	NAD metabolism	83.33	15 of 18
[Ref.: #66794]	glycine betaine biosynthesis	80	4 of 5
[Ref.: #66794]	peptidoglycan biosynthesis	80	12 of 15
[Ref.: #66794]	glycogen metabolism	80	4 of 5
[Ref.: #66794]	citric acid cycle	78.57	11 of 14
[Ref.: #66794]	CO2 fixation in Crenarchaeota	77.78	7 of 9
[Ref.: #66794]	CMP-KDO biosynthesis	75	3 of 4
[Ref.: #66794]	acetate fermentation	75	3 of 4
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	flavin biosynthesis	73.33	11 of 15
[Ref.: #66794]	alanine metabolism	72.41	21 of 29
[Ref.: #66794]	ubiquinone biosynthesis	71.43	5 of 7
[Ref.: #66794]	cardiolipin biosynthesis	71.43	5 of 7
[Ref.: #66794]	propionate fermentation	70	7 of 10
[Ref.: #66794]	serine metabolism	66.67	6 of 9
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	IAA biosynthesis	66.67	2 of 3
[Ref.: #66794]	formaldehyde oxidation	66.67	2 of 3
[Ref.: #66794]	d-mannose degradation	66.67	6 of 9
[Ref.: #66794]	pyrimidine metabolism	66.67	30 of 45
[Ref.: #66794]	L-lactaldehyde degradation	66.67	2 of 3
[Ref.: #66794]	purine metabolism	65.96	62 of 94
[Ref.: #66794]	non-pathway related	65.79	25 of 38
[Ref.: #66794]	glutamate and glutamine metabolism	64.29	18 of 28
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
[Ref.: #66794]	lysine metabolism	61.9	26 of 42
[Ref.: #66794]	methionine metabolism	61.54	16 of 26
[Ref.: #66794]	cysteine metabolism	61.11	11 of 18
[Ref.: #66794]	arachidonate biosynthesis	60	3 of 5
[Ref.: #66794]	threonine metabolism	60	6 of 10
[Ref.: #66794]	cellulose degradation	60	3 of 5
[Ref.: #66794]	glycolysis	58.82	10 of 17
[Ref.: #66794]	aspartate and asparagine metabolism	55.56	5 of 9
[Ref.: #66794]	lipid metabolism	54.84	17 of 31
[Ref.: #66794]	d-xylose degradation	54.55	6 of 11
[Ref.: #66794]	metabolism of disaccharids	54.55	6 of 11
[Ref.: #66794]	leucine metabolism	53.85	7 of 13
[Ref.: #66794]	heme metabolism	50	7 of 14
[Ref.: #66794]	ketogluconate metabolism	50	4 of 8
[Ref.: #66794]	dTDPLrhamnose biosynthesis	50	4 of 8
[Ref.: #66794]	suberin monomers biosynthesis	50	1 of 2
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	tryptophan metabolism	50	19 of 38
[Ref.: #66794]	Entner Doudoroff pathway	50	5 of 10
[Ref.: #66794]	butanoate fermentation	50	2 of 4
[Ref.: #66794]	kanosamine biosynthesis II	50	1 of 2
[Ref.: #66794]	quinate degradation	50	1 of 2
[Ref.: #66794]	isoprenoid biosynthesis	50	13 of 26
[Ref.: #66794]	isoleucine metabolism	50	4 of 8
[Ref.: #66794]	pantothenate biosynthesis	50	3 of 6
[Ref.: #66794]	phenylalanine metabolism	46.15	6 of 13
[Ref.: #66794]	vitamin B6 metabolism	45.45	5 of 11
[Ref.: #66794]	pentose phosphate pathway	45.45	5 of 11
[Ref.: #66794]	reductive acetyl coenzyme A pathway	42.86	3 of 7
[Ref.: #66794]	mevalonate metabolism	42.86	3 of 7
[Ref.: #66794]	tyrosine metabolism	42.86	6 of 14
[Ref.: #66794]	carotenoid biosynthesis	40.91	9 of 22
[Ref.: #66794]	oxidative phosphorylation	40.66	37 of 91
[Ref.: #66794]	lipoate biosynthesis	40	2 of 5
[Ref.: #66794]	coenzyme M biosynthesis	40	4 of 10
[Ref.: #66794]	glycine metabolism	40	4 of 10
[Ref.: #66794]	vitamin B1 metabolism	38.46	5 of 13
[Ref.: #66794]	phenylpropanoid biosynthesis	38.46	5 of 13
[Ref.: #66794]	sulfate reduction	38.46	5 of 13
[Ref.: #66794]	histidine metabolism	37.93	11 of 29
[Ref.: #66794]	ascorbate metabolism	36.36	8 of 22
[Ref.: #66794]	proline metabolism	36.36	4 of 11
[Ref.: #66794]	acetyl CoA biosynthesis	33.33	1 of 3
[Ref.: #66794]	cyanate degradation	33.33	1 of 3
[Ref.: #66794]	selenocysteine biosynthesis	33.33	2 of 6
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	33.33	4 of 12
[Ref.: #66794]	glycolate and glyoxylate degradation	33.33	2 of 6
[Ref.: #66794]	valine metabolism	33.33	3 of 9
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
[Ref.: #66794]	sulfoquinovose degradation	33.33	1 of 3
[Ref.: #66794]	octane oxidation	33.33	1 of 3
[Ref.: #66794]	enterobactin biosynthesis	33.33	1 of 3
[Ref.: #66794]	degradation of pentoses	32.14	9 of 28
[Ref.: #66794]	urea cycle	30.77	4 of 13
[Ref.: #66794]	polyamine pathway	30.43	7 of 23
[Ref.: #66794]	arginine metabolism	29.17	7 of 24
[Ref.: #66794]	glutathione metabolism	28.57	4 of 14
[Ref.: #66794]	degradation of hexoses	27.78	5 of 18
[Ref.: #66794]	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
[Ref.: #66794]	3-phenylpropionate degradation	26.67	4 of 15
[Ref.: #66794]	cyclohexanol degradation	25	1 of 4
[Ref.: #66794]	lactate fermentation	25	1 of 4
[Ref.: #66794]	arachidonic acid metabolism	22.22	4 of 18
[Ref.: #66794]	nitrate assimilation	22.22	2 of 9
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #25248]	Sample type/isolated from	Arctic surface seawater
[Ref.: #25248]	Geographic location (country and/or sea, region)	Arctic seawater
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	-
#Environmental	#Aquatic	#Surface water
#Condition	#Psychrophilic (<10°C)	-
#Climate	#Cold	#Polar

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #25248]	16S rRNA gene sequences	KU529277	1482	ENA	1784713 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Flavobacterium arcticum SM1502	GCA_003344925	complete	GenBank	1784713 tax ID	*
[Ref.: #66792]	Flavobacterium arcticum KCTC 42668	GCA_004634185	contig	GenBank	1784713 tax ID	*
[Ref.: #66792]	Flavobacterium arcticum strain KCTC 42668	1784713.5	wgs	PATRIC	1784713 tax ID	*
[Ref.: #66792]	Flavobacterium arcticum SM1502	2847339297	complete	JGI IMG/M	1784713 tax ID	*

[Ref.: #25248]

GC-content

37 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Flavobacterium arcticum SM1502 NCBI: GCA_003344925.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Flavobacterium arcticum SM1502 NCBI: GCA_003344925.1
[Ref.: #69480]	motile	no	91.932	yes
[Ref.: #69480]	flagellated	no	96.355	yes
[Ref.: #69480]	gram-positive	no	98.834	yes
[Ref.: #69480]	anaerobic	no	99.133	yes
[Ref.: #69480]	aerobic	yes	90.484	yes
[Ref.: #69480]	halophile	no	88.421	no
[Ref.: #69480]	spore-forming	no	96.319	no
[Ref.: #69480]	glucose-util	yes	81.034	no
[Ref.: #69480]	thermophile	no	98.055	no
[Ref.: #69480]	glucose-ferment	no	92.032	no

Availability in culture collections External links

[Ref.: #25248]

Culture collection no.

KCTC 42668, CCTCC AB 2015346

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Flavobacterium salilacus sp. nov., isolated from surface water of a hypersaline lake, and descriptions of Flavobacterium salilacus subsp. altitudinum subsp. nov. and Flavobacterium salilacus subsp. salilacus subsp. nov.	Debnath SC, Chen C, Khan I, Wang WJ, Zheng DQ, Xu JZ, Wang PM	Int J Syst Evol Microbiol	10.1099/ijsem.0.004281	2020	*
Phylogeny	Flavobacterium cyanobacteriorum sp. nov., isolated from cyanobacterial aggregates in a eutrophic lake.	Cai H, Zeng Y, Wang Y, Cui H, Jiang H	Int J Syst Evol Microbiol	10.1099/ijsem.0.002664	2018	*
Phylogeny	Flavobacterium arcticum sp. nov., isolated from Arctic seawater.	Li DD, Liu C, Zhang YQ, Wang XJ, Wang N, Peng M, Song XY, Su HN, Zhang XY, Zhang YZ, Shi M	Int J Syst Evol Microbiol	10.1099/ijsem.0.001804	2017	*
Phylogeny	Flavobacterium litorale sp. nov., isolated from red alga.	Muhammad N, Le Han H, Lee YJ, Ko J, Nguyen TTH, Kim SG	Int J Syst Evol Microbiol	10.1099/ijsem.0.005458	2022	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#25248

D. D. L. Li, C.,Zhang, Y. Q.,Wang, X. J.,Wang, N.,Peng, M.,Song, X. Y.,Su, H. N.,Zhang, X. Y.,Zhang, Y. Z.,Shi, M.: Flavobacterium arcticum sp. nov., isolated from Arctic seawater. IJSEM 67: 1070 - 1074 2017 ( DOI 10.1099/ijsem.0.001804 , PubMed 28100315 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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