Name: Pedobacter petrophilus CCM 8687
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133116

Type strain:

Species: Pedobacter petrophilus

Culture col. no.: CCM 8687, LMG 29686

NCBI tax ID(s): 1908241 (species)

Pedobacter petrophilus CCM 8687 is a Gram-negative bacterium of the family Sphingobacteriaceae.

Gram-negative
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Sphingobacteriia*
	Order	*Sphingobacteriales*
	Family	*Sphingobacteriaceae*
	Genus	*Pedobacter*
	Species	**Pedobacter petrophilus**
	Full Scientific Name (LPSN)	Pedobacter petrophilus Švec et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.966

[Ref.: #69480]	Motility	no Confidence in %91.446

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.974

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #25302]

Fatty acid	Percentage
C16:1ω7c / C16:1ω6c	31.3
C15:0 iso	17.9
C17:0 iso 3OH	14.8
C16:0 iso 3OH	6.6
C15:0 anteiso	5.5
C17:0 2OH	4.2
C16:0 10-methyl / iso-C17:1ω9c	3.5
C15:1ω6c	2.8
C16:1ω5c	2.6
C15:0 iso 3OH	2.3
C15:0 2OH	1.4
C16:0 iso	1.2
C17:1ω8c	1.1

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Pedobacter petrophilus LMG 29686	GCA_009674725	contig	GenBank	1908241 tax ID	*
[Ref.: #66792]	Pedobacter petrophilus strain LMG 29686	1908241.4	wgs	PATRIC	1908241 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Pedobacter petrophilus strain LMG 29686 PATRIC: 1908241.4
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pedobacter petrophilus strain LMG 29686 PATRIC: 1908241.4
[Ref.: #69480]	motile	no	89.456	no
[Ref.: #69480]	gram-positive	no	96.515	no
[Ref.: #69480]	anaerobic	no	99.439	no
[Ref.: #69480]	aerobic	yes	83.277	no
[Ref.: #69480]	halophile	no	96.109	no
[Ref.: #69480]	spore-forming	no	92.988	no
[Ref.: #69480]	glucose-util	yes	91.315	no
[Ref.: #69480]	flagellated	no	96.858	no
[Ref.: #69480]	thermophile	no	99.062	no
[Ref.: #69480]	glucose-ferment	no	88.822	no

Availability in culture collections External links

[Ref.: #25302]

Culture collection no.

CCM 8687, LMG 29686

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pedobacter jamesrossensis sp. nov., Pedobacter lithocola sp. nov., Pedobacter mendelii sp. nov. and Pedobacter petrophilus sp. nov., isolated from the Antarctic environment.	Svec P, Kralova S, Busse HJ, Kleinhagauer T, Pantucek R, Maslanova I, Cnockaert M, Vandamme P, Stankova E, Gelbicova T, Holochova P, Bartak M, Kyrova K, Sedlacek I	Int J Syst Evol Microbiol	10.1099/ijsem.0.001749	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#25302

P. K. Svec, S.,Busse, H. J.,Kleinhagauer, T.,Pantucek, R.,Maslanová, I.,Cnockaert, M.,Vandamme, P.,Stanková, E.,Gelbícová, T.,Holochová, Pavla,Barták, M.,Kýrová, Kamila,Sedlácek, I.: Pedobacter jamesrossensis sp. nov., Pedobacter lithocola sp. nov., Pedobacter mendelii sp. nov. and Pedobacter petrophilus sp. nov., isolated from the Antarctic environment. IJSEM 67: 1499 - 1507 2017 ( DOI 10.1099/ijsem.0.001749 , PubMed 27995868 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Pedobacter petrophilus strain LMG 29686

Pedobacter petrophilus strain LMG 29686

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