Name: Spongitalea numazuensis HJ24
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133095

Type strain:

Species: Spongitalea numazuensis

Strain Designation: HJ24

Culture col. no.: DSM 21243, MBIC 07593

Strain history: <- H. Kasai, Marine Biotechnol. Inst., Kamaishi, Japan <- M. Nishijima; HJ24

NCBI tax ID(s): 499059 (species)

Section

Spongitalea numazuensis HJ24 is a mesophilic bacterium that was isolated from marine sponge from seashore.

mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	"Spongitalea"
	Species	"Spongitalea numazuensis"
	Full Scientific Name (LPSN)	Spongitalea numazuensis Mitra et al. 2012

Information on culture and growth conditions Culture and growth conditions

[Ref.: #24883]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #24883]

Culture medium growth

[Ref.: #24883]

Culture medium link

Medium recipe at MediaDive

[Ref.: #24883]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #24883]			growth	28 °C

[Ref.: #24883]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24883]	Sample type/isolated from	marine sponge from seashore
[Ref.: #24883]	Geographic location (country and/or sea, region)	Shizuoka Prefecture, Numazu City
[Ref.: #24883]	Country	Japan
[Ref.: #24883]	Country ISO 3 Code	JPN
[Ref.: #24883]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Terrestrial	#Coast
#Host	#Invertebrates (Other)	#Porifera (Sponges)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB377120 (>99% sequence identity) for Spongitalea numazuensis subclade from Microbeatlas

Aquatic Samples	403
Soil Samples	22
Animal Samples	33
Plant Samples
Total Samples	458

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24883]	Spongitalea numazuensis gene for 16S rRNA, partial sequence, strain: HJ24	AB377120	1437	ENA	499059 tax ID

[Ref.: #24883]

GC-content

41 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #24883]

Culture collection no.

DSM 21243, MBIC 07593

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Spongitalea numazuensis gen. nov., sp. nov., a new marine bacterium of the family Flavobacteriaceae isolated from an unidentified marine sponge.	Mitra S, Nishijima M, Kasai H, Yokota A, Yoon J	J Gen Appl Microbiol	10.2323/jgam.58.379	2012	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24883

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21243

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Spongitalea numazuensis in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF