Name: Paenibacillus aceris KUDC4121
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133094

Type strain:

Species: Paenibacillus aceris

Strain Designation: KUDC4121

Culture col. no.: DSM 24950, KCTC 13870

Strain history: <- SY Ghim, Kyungpook Natl. Univ.

NCBI tax ID(s): 869555 (species)

SI-ID 403144

DSM 24950

Section

Paenibacillus aceris KUDC4121 is a facultative anaerobe, Gram-positive, rod-shaped bacterium that forms circular colonies and was isolated from rhizosphere of Acer okamotoanum.

colony-forming
Gram-positive
rod-shaped
facultative anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Paenibacillaceae*
	Genus	*Paenibacillus*
	Species	**Paenibacillus aceris**
	Full Scientific Name (LPSN)	Paenibacillus aceris Hwang and Ghim 2017

Information on morphological and physiological properties Morphology

[Ref.: #25289]	Gram stain	positive
[Ref.: #67771]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #25289]	Cell length	2.0-2.5 µm

[Ref.: #25289]	Cell width	0.2-0.4 µm

[Ref.: #25289]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #25289]	Motility	no
[Ref.: #67771]	Motility	no
[Ref.: #69480]	Motility	yes Confidence in %97.374

[Ref.: #25289]	Colony size	2.0-3.0 mm
[Ref.: #25289]	Colony color	creamy white
[Ref.: #25289]	Colony shape	circular
[Ref.: #25289]	Incubation period	3 days
[Ref.: #25289]	Cultivation medium used	R2A agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #25289]

Culture medium

Reasoner's 2A agar (R2A)

[Ref.: #25289]

Culture medium growth

[Ref.: #25289]

Culture medium

tryptic soy agar (TSA)

[Ref.: #25289]

Culture medium growth

[Ref.: #24882]

Culture medium

CASO AGAR (MERCK 105458) (DSMZ Medium 220)

[Ref.: #24882]

Culture medium growth

[Ref.: #24882]

Culture medium link

Medium recipe at MediaDive

[Ref.: #24882]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #24882]	growth	30 °C
[Ref.: #25289]	growth	18-37 °C
[Ref.: #25289]	optimum	30 °C
[Ref.: #67771]	growth	30 °C

[Ref.: #24882]	Temperature range	mesophilic
[Ref.: #25289]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #25289]			optimum	7
[Ref.: #25289]			growth	6.0-7.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #25289]	Oxygen tolerance	facultative anaerobe
[Ref.: #67771]	Oxygen tolerance	facultative anaerobe

[Ref.: #25289]	Ability of spore formation	no
[Ref.: #67771]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #25289]		NaCl		growth	0.0-0.5	%(w/v)
[Ref.: #25289]		NaCl		optimum	0.5	%(w/v)

[Ref.: #67771]

Observation

quinones: MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #25289]	2-dehydro-D-gluconate ChEBI	-	builds acid from
[Ref.: #25289]	3-O-methyl alpha-D-glucopyranoside	+	builds acid from
[Ref.: #25289]	4-nitrophenyl beta-D-galactopyranoside ChEBI	+	hydrolysis
[Ref.: #25289]	5-dehydro-D-gluconate ChEBI	+	builds acid from
[Ref.: #25289]	amygdalin ChEBI	+	builds acid from
[Ref.: #25289]	arbutin ChEBI	+	builds acid from
[Ref.: #25289]	cellobiose ChEBI	+	builds acid from
[Ref.: #25289]	D-arabinose ChEBI	+	builds acid from
[Ref.: #25289]	D-arabitol ChEBI	-	builds acid from
[Ref.: #25289]	D-fucose ChEBI	-	builds acid from
[Ref.: #25289]	D-lyxose ChEBI	-	builds acid from
[Ref.: #25289]	D-tagatose ChEBI	-	builds acid from
[Ref.: #25289]	D-xylose ChEBI	+	builds acid from
[Ref.: #25289]	erythritol ChEBI	-	builds acid from
[Ref.: #25289]	esculin ChEBI	+	hydrolysis
[Ref.: #25289]	esculin ChEBI	+	builds acid from
[Ref.: #25289]	fructose ChEBI	+	builds acid from
[Ref.: #25289]	galactitol ChEBI	-	builds acid from
[Ref.: #25289]	galactose ChEBI	+	builds acid from
[Ref.: #25289]	gentiobiose ChEBI	+	builds acid from
[Ref.: #25289]	gluconate ChEBI	+	builds acid from
[Ref.: #25289]	glucose ChEBI	+	hydrolysis
[Ref.: #25289]	glucose ChEBI	+	builds acid from
[Ref.: #25289]	glycerol ChEBI	+	builds acid from
[Ref.: #25289]	glycogen ChEBI	+	builds acid from
[Ref.: #25289]	hypoxanthine ChEBI	-	hydrolysis
[Ref.: #25289]	inulin ChEBI	-	builds acid from
[Ref.: #25289]	L-arabinose ChEBI	+	builds acid from
[Ref.: #25289]	L-arabitol ChEBI	-	builds acid from
[Ref.: #25289]	L-fucose ChEBI	+	builds acid from
[Ref.: #25289]	L-xylose ChEBI	-	builds acid from
[Ref.: #25289]	lactose ChEBI	+	builds acid from
[Ref.: #25289]	maltose ChEBI	+	hydrolysis
[Ref.: #25289]	maltose ChEBI	+	builds acid from
[Ref.: #25289]	mannitol ChEBI	-	builds acid from
[Ref.: #25289]	mannose ChEBI	+	hydrolysis
[Ref.: #25289]	mannose ChEBI	+	builds acid from
[Ref.: #25289]	melezitose ChEBI	+	builds acid from
[Ref.: #25289]	melibiose ChEBI	+	builds acid from
[Ref.: #25289]	methyl alpha-D-mannoside ChEBI	+	builds acid from
[Ref.: #25289]	methyl beta-D-xylopyranoside ChEBI	+	builds acid from
[Ref.: #25289]	myo-inositol ChEBI	+	builds acid from
[Ref.: #25289]	N-acetylglucosamine ChEBI	+	hydrolysis
[Ref.: #25289]	N-acetylglucosamine ChEBI	+	builds acid from
[Ref.: #25289]	nitrate ChEBI	-	reduction
[Ref.: #25289]	potassium gluconate ChEBI	+	hydrolysis
[Ref.: #25289]	raffinose ChEBI	+	builds acid from
[Ref.: #25289]	rhamnose ChEBI	+	builds acid from
[Ref.: #25289]	ribitol ChEBI	-	builds acid from
[Ref.: #25289]	ribose ChEBI	+	builds acid from
[Ref.: #25289]	salicin ChEBI	+	builds acid from
[Ref.: #25289]	sorbitol ChEBI	+	builds acid from
[Ref.: #25289]	sorbose ChEBI	+	builds acid from
[Ref.: #25289]	starch ChEBI	-	builds acid from
[Ref.: #25289]	sucrose ChEBI	+	builds acid from
[Ref.: #25289]	trehalose ChEBI	+	builds acid from
[Ref.: #25289]	turanose ChEBI	+	builds acid from
[Ref.: #25289]	tween 60 ChEBI	-	hydrolysis
[Ref.: #25289]	xanthine ChEBI	-	hydrolysis
[Ref.: #25289]	xylitol ChEBI	+	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #25289]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #25289]	acid phosphatase	-	3.1.3.2
[Ref.: #25289]	alkaline phosphatase	+	3.1.3.1
[Ref.: #25289]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #25289]	alpha-fucosidase	-	3.2.1.51
[Ref.: #25289]	alpha-galactosidase	+	3.2.1.22
[Ref.: #25289]	alpha-glucosidase	-	3.2.1.20
[Ref.: #25289]	alpha-mannosidase	-	3.2.1.24
[Ref.: #25289]	beta-galactosidase	+	3.2.1.23
[Ref.: #25289]	beta-glucosidase	-	3.2.1.21
[Ref.: #25289]	beta-glucuronidase	-	3.2.1.31
[Ref.: #25289]	catalase	+	1.11.1.6
[Ref.: #25289]	cystine arylamidase	-	3.4.11.3
[Ref.: #25289]	cytochrome oxidase	+	1.9.3.1
[Ref.: #25289]	esterase Lipase (C 8)	+
[Ref.: #25289]	leucine arylamidase	-	3.4.11.1
[Ref.: #25289]	lipase	-
[Ref.: #25289]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #25289]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #25289]	trypsin	-	3.4.21.4
[Ref.: #25289]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #25289]

Fatty acid	Percentage
C15:0 anteiso	62.5
C16:0 iso	11.6
C16:0	10.8
C14:0 iso	4.3
iso-C15.0	2.9
C17:0 anteiso	2.7
C14:0	2.5
C15:0	1.5
C18:0	1.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24882]	Sample type/isolated from	rhizosphere of Acer okamotoanum
[Ref.: #24882]	Host species	Acer okamotoanum
[Ref.: #24882]	Geographic location (country and/or sea, region)	Ulleungdo Island
[Ref.: #24882]	Country	Republic of Korea
[Ref.: #24882]	Country ISO 3 Code	KOR
[Ref.: #24882]	Continent	Asia

[Ref.: #25289]	Sample type/isolated from	rhizosphere of Acer okamotoanum
[Ref.: #25289]	Geographic location (country and/or sea, region)	Ulleungdo Island
[Ref.: #25289]	Country	Republic of Korea
[Ref.: #25289]	Country ISO 3 Code	KOR
[Ref.: #25289]	Continent	Asia
[Ref.: #25289]	Geographic location	37.4880°/130.8580°
[Ref.: #25289]	Enrichment culture	tryptic soy agar (TSA, Difco)
[Ref.: #25289]	Enrichment culture duration	7 days
[Ref.: #25289]	Enrichment culture temperature	25 ̊C
[Ref.: #25289]	Isolation/enrichment procedure	serial dilution

[Ref.: #67771]	Sample type/isolated from	From rhizosphere of `Acer okamotoanum`
[Ref.: #67771]	Geographic location (country and/or sea, region)	Ulleungdo Island
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Tree
#Host Body-Site	#Plant	#Rhizosphere

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KU879057 (>99% sequence identity) for Paenibacillus aceris from Microbeatlas

Aquatic Samples
Soil Samples	3
Animal Samples
Plant Samples
Total Samples	3

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #24882]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #25289]	Paenibacillus sp. KUDC4121 16S ribosomal RNA gene, partial sequence	KU879057	1502	GenBank	869555 tax ID
[Ref.: #24882]	Paenibacillus aceris strain KUDC4121 16S ribosomal RNA gene, partial sequence	HM027926	1369	ENA	869555 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Paenibacillus aceris DSM 24950	GCA_017874035	contig	GenBank	869555 tax ID	*
[Ref.: #66792]	Paenibacillus aceris strain DSM 24950	869555.4	wgs	PATRIC	869555 tax ID	*
[Ref.: #66792]	Paenibacillus aceris DSM 24950	2913432798	draft	JGI IMG/M	869555 tax ID	*

[Ref.: #25289]	GC-content	48.8 mol%	high performance liquid chromatography (HPLC)
[Ref.: #24882]	GC-content	48.2 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67771]	GC-content	48.2 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Paenibacillus aceris strain DSM 24950 PATRIC: 869555.3
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Paenibacillus aceris strain DSM 24950 PATRIC: 869555.4
[Ref.: #69480]	motile	yes	82.944	yes
[Ref.: #69480]	flagellated	yes	84.423	no
[Ref.: #69480]	gram-positive	yes	79.751	no
[Ref.: #69480]	anaerobic	no	98.985	no
[Ref.: #69480]	halophile	no	95.937	yes
[Ref.: #69480]	spore-forming	yes	88.882	yes
[Ref.: #69480]	thermophile	no	99.625	no
[Ref.: #69480]	glucose-util	yes	91.624	no
[Ref.: #69480]	aerobic	yes	82.349	yes
[Ref.: #69480]	glucose-ferment	no	90.977	no

Availability in culture collections External links

[Ref.: #24882]

Culture collection no.

DSM 24950, KCTC 13870

[Ref.: #91359]

SI-ID 403144

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paenibacillus silvestris sp. nov., Isolated from Forest Soil.	Kim J, Jung HS, Baek JH, Chun BH, Khan SA, Jeon CO	Curr Microbiol	10.1007/s00284-020-02333-4	2021	*
Phylogeny	Paenibacillus anseongense sp. nov. a Silver Nanoparticle Producing Bacterium Isolated from Rhizospheric Soil.	Huq MA	Curr Microbiol	10.1007/s00284-020-02086-0	2020	*
Phylogeny	Paenibacillus aceris sp. nov., isolated from the rhizosphere of Acer okamotoanum, a plant native to Ulleungdo Island, Republic of Korea.	Hwang YJ, Ghim SY	Int J Syst Evol Microbiol	10.1099/ijsem.0.001748	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24882

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 24950

#25289

Y.-J. G. Hwang, S.-Y.: Paenibacillus aceris sp. nov., isolated from the rhizosphere of Acer okamotoanum, a plant native to Ulleungdo Island, Republic of Korea. IJSEM 67: 1039 - 1045 2017 ( DOI 10.1099/ijsem.0.001748 , PubMed 27995861 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#91359

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID403144.1 )

* These data were automatically processed and therefore are not curated

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Paenibacillus aceris strain DSM 24950

Paenibacillus aceris strain DSM 24950

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