Name: Planococcus versutus L10.15
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133091

Type strain:

Species: Planococcus versutus

Strain Designation: L10.15

Culture col. no.: DSM 101994, KACC 18918

Strain history: <- W. S. See-Too, Univ. of Malaya, Kuala Lumpur, Malaysia; L10.15

NCBI tax ID(s): 1302659 (species)

SI-ID 406612

DSM 101994

Section

Planococcus versutus L10.15 is an aerobe, Gram-positive, motile bacterium that forms circular colonies and was isolated from soil from an elephant seal wallow.

coccus-shaped
colony-forming
Gram-positive
motile
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Caryophanaceae*
	Genus	*Planococcus*
	Species	**Planococcus versutus**
	Full Scientific Name (LPSN)	Planococcus versutus See-Too et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #25288]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #25288]	Cell length	1.0-1.5 µm

[Ref.: #25288]	Cell width	1.0-1.5 µm

[Ref.: #25288]	Cell shape	coccus-shaped

[Ref.: #25288]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %93.702

[Ref.: #25288]	Colony size	1-2 mm
[Ref.: #25288]	Colony color	orange
[Ref.: #25288]	Colony shape	circular
[Ref.: #25288]	Incubation period	2 days
[Ref.: #25288]	Cultivation medium used	LB agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #25288]

Culture medium

LB (Luria-Bertani) MEDIUM

[Ref.: #25288]

Culture medium growth

[Ref.: #24879]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #24879]

Culture medium growth

[Ref.: #24879]

Culture medium link

Medium recipe at MediaDive

[Ref.: #24879]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #24879]	growth	15 °C
[Ref.: #25288]	growth	4-30 °C
[Ref.: #25288]	optimum	25 °C

[Ref.: #24879]	Temperature range	psychrophilic
[Ref.: #25288]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #25288]			optimum	7.0-8.0
[Ref.: #25288]			growth	6.0-11.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #25288]

Oxygen tolerance

aerobe

[Ref.: #25288]	Ability of spore formation	no
[Ref.: #69480]	Ability of spore formation	no Confidence in %96.679

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #25288]		NaCl		growth	0.0-14.0	%(w/v)
[Ref.: #25288]		NaCl		optimum	6	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #25288]	(S)-lactate ChEBI	-	assimilation
[Ref.: #25288]	2-hydroxybutyrate ChEBI	-	assimilation
[Ref.: #25288]	2-oxobutanoate ChEBI	-	assimilation
[Ref.: #25288]	2-oxoglutarate ChEBI	+	assimilation
[Ref.: #25288]	3-O-methyl-D-glucose ChEBI	-	assimilation
[Ref.: #25288]	4-hydroxyphenylacetic acid ChEBI	-	assimilation
[Ref.: #25288]	acetate ChEBI	+	assimilation
[Ref.: #25288]	acetoacetate ChEBI	+	assimilation
[Ref.: #25288]	alpha-D-glucose ChEBI	+	assimilation
[Ref.: #25288]	alpha-lactose ChEBI	-	assimilation
[Ref.: #25288]	beta-hydroxybutyrate ChEBI	+	assimilation
[Ref.: #25288]	bromosuccinate ChEBI	-	assimilation
[Ref.: #25288]	cellobiose ChEBI	-	assimilation
[Ref.: #25288]	citrate ChEBI	-	assimilation
[Ref.: #25288]	D-arabitol ChEBI	-	assimilation
[Ref.: #25288]	D-aspartate ChEBI	-	assimilation
[Ref.: #25288]	D-fructose ChEBI	+	assimilation
[Ref.: #25288]	D-fructose 6-phosphate ChEBI	+	assimilation
[Ref.: #25288]	D-fucose ChEBI	-	assimilation
[Ref.: #25288]	D-galactose ChEBI	-	assimilation
[Ref.: #25288]	D-galacturonic acid ChEBI	+	assimilation
[Ref.: #25288]	D-glucarate ChEBI	+	assimilation
[Ref.: #25288]	D-gluconate ChEBI	+	assimilation
[Ref.: #25288]	D-glucose 6-phosphate ChEBI	+	assimilation
[Ref.: #25288]	D-glucuronate ChEBI	+	assimilation
[Ref.: #25288]	D-lactic acid methyl ester	+	assimilation
[Ref.: #25288]	D-malate ChEBI	+	assimilation
[Ref.: #25288]	D-mannitol ChEBI	+	assimilation
[Ref.: #25288]	D-mannose ChEBI	-	assimilation
[Ref.: #25288]	D-serine ChEBI	-	assimilation
[Ref.: #25288]	D-sorbitol ChEBI	-	assimilation
[Ref.: #25288]	dextrin ChEBI	+	assimilation
[Ref.: #25288]	formate ChEBI	+	assimilation
[Ref.: #25288]	galactarate ChEBI	+	assimilation
[Ref.: #25288]	gamma-aminobutyric acid ChEBI	-	assimilation
[Ref.: #25288]	gelatin ChEBI	-	assimilation
[Ref.: #25288]	gentiobiose ChEBI	-	assimilation
[Ref.: #25288]	glucuronamide ChEBI	+	assimilation
[Ref.: #25288]	glycerol ChEBI	+	assimilation
[Ref.: #25288]	glycine-proline ChEBI	+	assimilation
[Ref.: #25288]	inosine ChEBI	+	assimilation
[Ref.: #25288]	L-alanine ChEBI	+	assimilation
[Ref.: #25288]	L-arginine ChEBI	-	assimilation
[Ref.: #25288]	L-aspartate ChEBI	+	assimilation
[Ref.: #25288]	L-fucose ChEBI	-	assimilation
[Ref.: #25288]	L-galactonic acid gamma-lactone ChEBI	+	assimilation
[Ref.: #25288]	L-glutamate ChEBI	+	assimilation
[Ref.: #25288]	L-histidine ChEBI	-	assimilation
[Ref.: #25288]	L-malate ChEBI	+	assimilation
[Ref.: #25288]	L-pyroglutamic acid ChEBI	+	assimilation
[Ref.: #25288]	L-rhamnose ChEBI	-	assimilation
[Ref.: #25288]	L-serine ChEBI	+	assimilation
[Ref.: #25288]	maltose ChEBI	-	assimilation
[Ref.: #25288]	melibiose ChEBI	-	assimilation
[Ref.: #25288]	methyl beta-D-glucopyranoside ChEBI	-	assimilation
[Ref.: #25288]	methyl pyruvate ChEBI	-	assimilation
[Ref.: #25288]	myo-inositol ChEBI	-	assimilation
[Ref.: #25288]	n-acetyl-D-galactosamine ChEBI	-	assimilation
[Ref.: #25288]	N-acetyl-D-glucosamine ChEBI	+	assimilation
[Ref.: #25288]	N-acetyl-D-mannosamine ChEBI	-	assimilation
[Ref.: #25288]	n-acetylneuraminate ChEBI	+	assimilation
[Ref.: #25288]	pectin ChEBI	+	assimilation
[Ref.: #25288]	propionate ChEBI	-	assimilation
[Ref.: #25288]	quinate ChEBI	-	assimilation
[Ref.: #25288]	raffinose ChEBI	-	assimilation
[Ref.: #25288]	salicin ChEBI	-	assimilation
[Ref.: #25288]	stachyose ChEBI	-	assimilation
[Ref.: #25288]	sucrose ChEBI	-	assimilation
[Ref.: #25288]	trehalose ChEBI	-	assimilation
[Ref.: #25288]	turanose ChEBI	-	assimilation
[Ref.: #25288]	tween 40 ChEBI	+	assimilation
	Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Metabolite
[Ref.: #25288]		N-acetyl-D-glucosamine ChEBI

	Enzyme	Enzyme activity	EC number
[Ref.: #25288]	alkaline phosphatase	-	3.1.3.1
[Ref.: #25288]	alpha-chymotrypsin	+	3.4.21.1
[Ref.: #25288]	amylase	-
[Ref.: #25288]	beta-galactosidase	-	3.2.1.23
[Ref.: #25288]	beta-glucosidase	-	3.2.1.21
[Ref.: #25288]	catalase	+	1.11.1.6
[Ref.: #25288]	cystine arylamidase	+	3.4.11.3
[Ref.: #25288]	esterase	-
[Ref.: #25288]	leucine arylamidase	+	3.4.11.1
[Ref.: #25288]	valine arylamidase	-

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #25288]

Fatty acid	Percentage
C15:0 anteiso	46.2
C17:0 anteiso	10.7
C16:1ω7c alcohol	6.5
iso-C17:1 / anteiso-C17:1	6
C16:1ω11c alcohol	5.6
C16:0 iso	5.5
C16:0	4
C14:0 iso	3.4
C17:0 iso	1.9
C15:0 iso	1.9
C17:1 iso ω10c	1.3
C15:0	1.2
C18:0	1
C17:1ω7c	0.8
C18:1ω9c	0.7
C18:0 iso	0.7
C17:0	0.7
C16:1ω7c / C16:1	0.6
C14:0	0.6
C13:0 anteiso	0.6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24879]	Sample type/isolated from	soil from an elephant seal wallow
[Ref.: #24879]	Geographic location (country and/or sea, region)	Lagoon Island
[Ref.: #24879]	Country	Antarctica
[Ref.: #24879]	Country ISO 3 Code	ATA
[Ref.: #24879]	Continent	Australia and Oceania

[Ref.: #25288]	Sample type/isolated from	Antarctic soil sample from elephant seal wallow
[Ref.: #25288]	Geographic location (country and/or sea, region)	Lagoon Island
[Ref.: #25288]	Country	Antarctica
[Ref.: #25288]	Country ISO 3 Code	ATA
[Ref.: #25288]	Continent	Australia and Oceania
[Ref.: #25288]	Geographic location	-67.0000°/68.0000°
[Ref.: #25288]	Enrichment culture	QQ bacteria enrichment medium
[Ref.: #25288]	Enrichment culture duration	1 week
[Ref.: #25288]	Enrichment culture temperature	4 ̊C
* marker position based on {}

Isolation sources categories

#Condition	#Psychrophilic (<10°C)	-
#Climate	#Cold	#Polar
#Environmental	#Terrestrial	#Soil
#Host	#Mammals	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KX516729 (>99% sequence identity) for Planococcus from Microbeatlas

Aquatic Samples	87
Soil Samples	184
Animal Samples	244
Plant Samples	33
Total Samples	548

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #24879]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24879]	Planococcus versutus strain L10.15 16S ribosomal RNA gene, partial sequence	KX516729	1538	ENA	1302659 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Planococcus versutus L10.15	GCA_001186155	complete	GenBank	1302659 tax ID	*
[Ref.: #66792]	Planococcus versutus L10.15	2788500496	complete	JGI IMG/M	1302659 tax ID	*
[Ref.: #66792]	Planococcus versutus L10.15	2700988609	complete	JGI IMG/M	1302659 tax ID	*

[Ref.: #24879]

GC-content

39.4 mol%

sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Planococcus versutus L10.15 NCBI: GCA_001186155.3
[Ref.: #69481]	spore-forming	no	72	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Planococcus versutus L10.15 NCBI: GCA_001186155.1
[Ref.: #69480]	motile	yes	72.313	yes
[Ref.: #69480]	flagellated	no	73.015	no
[Ref.: #69480]	gram-positive	yes	89.992	yes
[Ref.: #69480]	anaerobic	no	99.329	no
[Ref.: #69480]	aerobic	yes	94.747	yes
[Ref.: #69480]	halophile	yes	87.73	no
[Ref.: #69480]	spore-forming	yes	51.701	yes
[Ref.: #69480]	glucose-util	yes	84.445	no
[Ref.: #69480]	thermophile	no	99.649	no
[Ref.: #69480]	glucose-ferment	no	87.16	no
[Ref.: #69480]	motile	yes	72.313	yes
[Ref.: #69480]	flagellated	no	73.015	no
[Ref.: #69480]	gram-positive	yes	89.992	yes
[Ref.: #69480]	anaerobic	no	99.329	no
[Ref.: #69480]	aerobic	yes	94.747	yes
[Ref.: #69480]	halophile	yes	87.73	no
[Ref.: #69480]	spore-forming	yes	51.701	yes
[Ref.: #69480]	glucose-util	yes	84.445	no
[Ref.: #69480]	thermophile	no	99.649	no
[Ref.: #69480]	glucose-ferment	no	87.16	no
[Ref.: #69480]	motile	yes	72.313	yes
[Ref.: #69480]	flagellated	no	73.015	no
[Ref.: #69480]	gram-positive	yes	89.992	yes
[Ref.: #69480]	anaerobic	no	99.329	no
[Ref.: #69480]	aerobic	yes	94.747	yes
[Ref.: #69480]	halophile	yes	87.73	no
[Ref.: #69480]	spore-forming	yes	51.701	yes
[Ref.: #69480]	glucose-util	yes	84.445	no
[Ref.: #69480]	thermophile	no	99.649	no
[Ref.: #69480]	glucose-ferment	no	87.16	no

Availability in culture collections External links

[Ref.: #24879]

Culture collection no.

DSM 101994, KACC 18918

[Ref.: #91356]

SI-ID 406612

Literature:

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Characterization of a novel N-acylhomoserine lactonase, AidP, from Antarctic Planococcus sp.	See-Too WS, Convey P, Pearce DA, Chan KG	Microb Cell Fact	10.1186/s12934-018-1024-6	2018	*
Phylogeny	Planococcus versutus sp. nov., isolated from soil.	See-Too WS, Ee R, Madhaiyan M, Kwon SW, Tan JY, Lim YL, Convey P, Pearce DA, Yin WF, Chan KG	Int J Syst Evol Microbiol	10.1099/ijsem.0.001721	2017	*
Phylogeny	AidP, a novel N-Acyl homoserine lactonase gene from Antarctic Planococcus sp.	See-Too WS, Ee R, Lim YL, Convey P, Pearce DA, Yin WF, Chan KG	Sci Rep	10.1038/srep42968	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24879

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 101994

#25288

W. S. E. See-Too, R.,Madhaiyan, M.,Kwon, S. W.,Tan, J. Y.,Lim, Y. L.,Convey, P.,Pearce, D. A.,Yin, W. F.,Chan, K. G.: Planococcus versutus sp. nov., isolated from soil. IJSEM 67: 944 - 950 2017 ( DOI 10.1099/ijsem.0.001721 , PubMed 27959786 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#91356

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID406612.1 )

* These data were automatically processed and therefore are not curated

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