Pseudactinotalea terrae (DSM 27157, KACC 16542, NBRC 111006)

Name: Pseudactinotalea terrae (DSM 27157, KACC 16542, NBRC 111006)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133083

Type strain

Strain Designation 5GHs33-03

Culture col. no. DSM 27157 KACC 16542 NBRC 111006 5GHs33-03

NCBI tax ID(s) 1743262

Special Collections DSMZ Literature strains

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Pseudactinotalea terrae 5GHs33-03 is an aerobe, Gram-negative, rod-shaped prokaryote that forms circular colonies and was isolated from greenhouse soil.

Gram-negative rod-shaped colony-forming aerobe genome sequence 16S sequence

Name and taxonomic classification

SI-ID 401644

NBRC 111006,DSM 27157

@ref 20215

Last LPSN update 2025-12-16 10:01:41

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Micrococcales

Family Cellulomonadaceae

Genus Pseudactinotalea

Species Pseudactinotalea terrae

Full scientific name Pseudactinotalea terrae Cho et al. 2017

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
25230	negative	1.2-2.2 µm	0.8-1.0 µm	rod-shaped
125439	positive				99.6

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
25230	1 mm	yellow	circular	4 days	R2A

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
25230	Reasoner's 2A agar (R2A)
24871	R2A MEDIUM (DSMZ Medium 830)		Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
24871	positive	growth	28	mesophilic
25230	positive	growth	4-37
25230	positive	optimum	28-30	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
25230	positive	optimum	7
25230	positive	growth	6.0-10.0	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
25230	aerobe
125439	obligate aerobe	99.6

Halophily

@ref	Salt	Growth	Tested relation	Concentration
25230	NaCl	positive	growth	0.0-7.0 %(w/v)
25230	NaCl		optimum	0 %(w/v)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
25230	16193 ChEBI	3-hydroxybenzoate	-	assimilation
25230	37054 ChEBI	3-hydroxybutyrate	-	assimilation
25230	17879 ChEBI	4-hydroxybenzoate	-	assimilation
25230	17128 ChEBI	adipate	-	assimilation
25230		casein	-	hydrolysis
25230	62968 ChEBI	cellulose	-	hydrolysis
25230	17029 ChEBI	chitin	-	hydrolysis
25230	17634 ChEBI	D-glucose	+	assimilation
25230	16899 ChEBI	D-mannitol	+	assimilation
25230	16024 ChEBI	D-mannose	-	assimilation
25230	16988 ChEBI	D-ribose	+	assimilation
25230	17924 ChEBI	D-sorbitol	-	assimilation
25230	27689 ChEBI	decanoate	-	assimilation
25230	16991 ChEBI	dna	-	hydrolysis
25230	4853 ChEBI	esculin	+	hydrolysis
25230	5291 ChEBI	gelatin	+	hydrolysis
25230	17234 ChEBI	glucose	-	fermentation
25230	28087 ChEBI	glycogen	-	assimilation
25230	17368 ChEBI	hypoxanthine	-	hydrolysis
25230	17240 ChEBI	itaconate	-	assimilation
25230	16977 ChEBI	L-alanine	-	assimilation
25230	30849 ChEBI	L-arabinose	-	assimilation
25230	18287 ChEBI	L-fucose	-	assimilation
25230	15971 ChEBI	L-histidine	-	assimilation
25230	17203 ChEBI	L-proline	-	assimilation
25230	62345 ChEBI	L-rhamnose	+	assimilation
25230	17115 ChEBI	L-serine	-	assimilation
25230	24996 ChEBI	lactate	-	assimilation
25230	25115 ChEBI	malate	-	assimilation
25230	17306 ChEBI	maltose	+	assimilation
25230	28053 ChEBI	melibiose	+	assimilation
25230	17268 ChEBI	myo-inositol	-	assimilation
25230	506227 ChEBI	N-acetylglucosamine	+	assimilation
25230	17632 ChEBI	nitrate	+	reduction
25230	18401 ChEBI	phenylacetate	-	assimilation
25230		potassium 2-dehydro-D-gluconate	-	assimilation
25230		potassium 5-dehydro-D-gluconate	-	assimilation
25230	32032 ChEBI	potassium gluconate	-	assimilation
25230	17272 ChEBI	propionate	-	assimilation
25230	17814 ChEBI	salicin	-	assimilation
25230	32954 ChEBI	sodium acetate	-	assimilation
25230	53258 ChEBI	sodium citrate	-	assimilation
25230	62983 ChEBI	sodium malonate	-	assimilation
25230	28017 ChEBI	starch	-	hydrolysis
25230	9300 ChEBI	suberic acid	-	assimilation
25230	17992 ChEBI	sucrose	+	assimilation
25230	53426 ChEBI	tween 80	-	hydrolysis
25230	18186 ChEBI	tyrosine	-	hydrolysis
25230	31011 ChEBI	valerate	-	assimilation
25230	15318 ChEBI	xanthine	-	hydrolysis

Metabolite production

@ref	Chebi-ID	Metabolite	Production
25230	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
25230	acid phosphatase	-	3.1.3.2
25230	alkaline phosphatase	-	3.1.3.1
25230	alpha-chymotrypsin	-	3.4.21.1
25230	alpha-fucosidase	-	3.2.1.51
25230	alpha-galactosidase	-	3.2.1.22
25230	alpha-glucosidase	+	3.2.1.20
25230	alpha-mannosidase	+	3.2.1.24
25230	arginine dihydrolase	-	3.5.3.6
25230	beta-galactosidase	+	3.2.1.23
25230	beta-glucosidase	+	3.2.1.21
25230	beta-glucuronidase	-	3.2.1.31
25230	cystine arylamidase	-	3.4.11.3
25230	cytochrome oxidase	+	1.9.3.1
25230	esterase (C 4)	+
25230	esterase Lipase (C 8)	+
25230	leucine arylamidase	+	3.4.11.1
25230	lipase (C 14)	-
25230	N-acetyl-beta-glucosaminidase	+	3.2.1.52
25230	naphthol-AS-BI-phosphohydrolase	+
25230	trypsin	-	3.4.21.4
25230	urease	-	3.5.1.5
25230	valine arylamidase	+

Fatty acid profile

Metadata FA analysis

@ref

25230

Fatty acid	Percentage
C15:0 anteiso	70.1
C14:0 iso	15.2
C15:0 iso	6.8
C14:0	1.7
C13:0 iso	1.7

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Agriculture	#Greenhouse
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Enrichment culture	Isolation procedure
24871	greenhouse soil	Gyeonggi province, Yongin region	Republic of Korea	KOR	Asia
25230						R2A medium	dilution method

Taxonmaps

69479

Global distribution of 16S sequence KR869780 (>99% sequence identity) for Pseudactinotalea terrae from Microbeatlas

Aquatic Samples	25
Soil Samples	100
Animal Samples	128
Plant Samples	46
Total Samples	299

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
24871	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM973384v1 assembly for Pseudactinotalea terrae KACC 16542	contig	GCA_009733845	1743262.3	2890205655	1743262	69.6

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
24871	Pseudactinotalea terrae strain 5GHs33-3 16S ribosomal RNA gene, partial sequence	KR869780	1462		1743262

GC content

@ref	GC-content (mol%)	Method
25230	69	Thermal denaturation, fluorometry
24871	69.0	fluorimetric

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Pseudactinotalea terrae KACC 16542
NCBI: GCA_009733845

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	53.10	no
125439	motility	BacteriaNetⓘ	no	76.80	no
125439	gram_stain	BacteriaNetⓘ	positive	99.60	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Pseudactinotalea terrae strain KACC 16542
PATRIC: 1743262.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	82.80	no
125438	anaerobic	anaerobicⓘ	no	93.90	yes
125438	spore-forming	spore-formingⓘ	no	68.01	no
125438	aerobic	aerobicⓘ	yes	84.88	yes
125438	thermophilic	thermophileⓘ	no	94.38	yes
125438	flagellated	motile2+ⓘ	no	75.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pseudactinotalea terrae gen. nov., sp. nov., isolated from greenhouse soil, and reclassification of Actinotalea suaedae as Pseudactinotalea suaedae comb. nov.	Cho H, Hamada M, Ahn JH, Weon HY, Joa JH, Suzuki KI, Kwon SW, Kim SJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.001701	2017

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#24871	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 27157
#25230	H. H. Cho, M.,Ahn, J. H.,Weon, H. Y.,Joa, J. H.,Suzuki, K. I.,Kwon, S. W.,Kim, S. J.: Pseudactinotalea terrae gen. nov., sp. nov., isolated from greenhouse soil, and reclassification of Actinotalea suaedae as Pseudactinotalea suaedae comb. nov. IJSEM 67: 704 - 709 2017 ( DOI 10.1099/ijsem.0.001701 , PubMed 27902298 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Pseudactinotalea terrae (DSM 27157, KACC 16542, NBRC 111006)

Name and taxonomic classification