Name: Lactobacillus colini L1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133069

Type strain:

Species: Lactobacillus colini

Strain Designation: L1, 111144-L1, L1(historical number)

Culture col. no.: DSM 101872, KCTC 21086

Strain history: <- Shuping Zhang, Univ. of Missouri <- S Zhang and H Su, Univ. Texas

NCBI tax ID(s): 1819254 (species)

SI-ID 396956

DSM 101872

Section

Lactobacillus colini L1 is a facultative anaerobe, Gram-positive, rod-shaped bacterium that forms circular colonies and was isolated from intestinal contents of a Northern Bobwhite .

colony-forming
Gram-positive
rod-shaped
facultative anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Lactobacillaceae*
	Genus	*Lactobacillus*
	Species	**Lactobacillus colini**
	Full Scientific Name (LPSN)	Lactobacillus colini Zhang et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #25191]	Gram stain	positive
[Ref.: #67771]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %99.731

[Ref.: #25191]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #25191]	Motility	no
[Ref.: #67771]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %94.643

[Ref.: #25191]	Type of hemolysis	alpha
[Ref.: #25191]	Hemolysis ability	1
[Ref.: #25191]	Colony size	0.5-1.5 mm
[Ref.: #25191]	Colony color	grey
[Ref.: #25191]	Colony shape	circular
[Ref.: #25191]	Incubation period	2 days
[Ref.: #25191]	Cultivation medium used	Columbia blood agar

[Ref.: #25191]	Colony size	1.0-1.5 mm
[Ref.: #25191]	Colony shape	irregular
[Ref.: #25191]	Incubation period	2 days
[Ref.: #25191]	Cultivation medium used	MRS agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #25191]

Culture medium

Columbia blood agar

[Ref.: #25191]

Culture medium growth

[Ref.: #25191]

Culture medium

MRS agar

[Ref.: #25191]

Culture medium growth

[Ref.: #25191]

Culture medium

BHI broth

[Ref.: #25191]

Culture medium growth

[Ref.: #25191]

Culture medium

MRS broth

[Ref.: #25191]

Culture medium growth

[Ref.: #24857]

Culture medium

MRS MEDIUM (DSMZ Medium 11)

[Ref.: #24857]

Culture medium growth

[Ref.: #24857]

Culture medium link

Medium recipe at MediaDive

[Ref.: #24857]

Culture medium composition

expand / minimize

	Kind of temperature		Temperature
[Ref.: #24857]		growth	37 °C
[Ref.: #25191]		growth	25.0-45.0 °C
[Ref.: #25191]		optimum	37 °C
[Ref.: #25191]	no	growth	20 °C
[Ref.: #67771]		growth	37 °C

[Ref.: #24857]	Temperature range	mesophilic
[Ref.: #25191]	Temperature range	mesophilic
[Ref.: #25191]	Temperature range	psychrophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #25191]			optimum	5.0-5.5
[Ref.: #25191]			growth	3.5-10.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #25191]	Oxygen tolerance	facultative anaerobe
[Ref.: #67771]	Oxygen tolerance	microaerophile

[Ref.: #25191]	Ability of spore formation	no
[Ref.: #67771]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.98

	Salt	Tested relation		Salt conc.
[Ref.: #25191]	NaCl		growth	0.5-3.0	%
[Ref.: #25191]	NaCl		optimum	<1.0	%
[Ref.: #25191]	NaCl	no	growth	4	%

[Ref.: #24857]	Murein short key	A11.31
[Ref.: #24857]	Murein types	A4alpha L-Lys-D-Asp

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #25191]	amygdalin ChEBI	+	builds acid from
[Ref.: #25191]	amygdalin ChEBI	+	hydrolysis
[Ref.: #68371]	amygdalin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #25191]	arbutin ChEBI	+	hydrolysis
[Ref.: #68371]	arbutin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #25191]	cellobiose ChEBI	+	builds acid from
[Ref.: #68371]	cellobiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #25191]	D-fructose ChEBI	+	builds acid from
[Ref.: #68371]	D-fructose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #25191]	D-galactose ChEBI	+	builds acid from
[Ref.: #68371]	D-galactose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #25191]	D-glucose ChEBI	+	builds acid from
[Ref.: #68371]	D-glucose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #25191]	D-mannitol ChEBI	+	builds acid from
[Ref.: #68371]	D-mannitol ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #25191]	D-mannose ChEBI	+	builds acid from
[Ref.: #25191]	D-ribose ChEBI	+	builds acid from
[Ref.: #68371]	D-ribose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #25191]	D-tagatose ChEBI	-	builds acid from
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #25191]	esculin ChEBI	+	hydrolysis
[Ref.: #68371]	esculin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #25191]	gentiobiose ChEBI	-	builds acid from
[Ref.: #68371]	gentiobiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	gluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycerol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #25191]	lactose ChEBI	-	builds acid from
[Ref.: #68371]	lactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #25191]	maltose ChEBI	+	builds acid from
[Ref.: #68371]	maltose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #25191]	melezitose ChEBI	+	builds acid from
[Ref.: #68371]	melezitose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	melibiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #25191]	methyl alpha-D-glucopyranoside ChEBI	+	builds acid from
[Ref.: #25191]	methyl alpha-D-glucopyranoside ChEBI	+	hydrolysis
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #25191]	N-acetylglucosamine ChEBI	+	builds acid from
[Ref.: #25191]	N-acetylglucosamine ChEBI	+	hydrolysis
[Ref.: #68371]	N-acetylglucosamine ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #25191]	raffinose ChEBI	+	builds acid from
[Ref.: #68371]	raffinose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #25191]	salicin ChEBI	+	builds acid from
[Ref.: #68371]	salicin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #25191]	starch ChEBI	+	hydrolysis
[Ref.: #68371]	starch ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #25191]	sucrose ChEBI	+	builds acid from
[Ref.: #68371]	sucrose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #25191]	trehalose ChEBI	+	builds acid from
[Ref.: #68371]	trehalose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	turanose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #25191]	alpha-galactosidase	+	3.2.1.22
[Ref.: #25191]	alpha-glucosidase	+	3.2.1.20
[Ref.: #25191]	beta-glucosidase	+	3.2.1.21
[Ref.: #25191]	catalase	-	1.11.1.6
[Ref.: #25191]	cytochrome oxidase	-	1.9.3.1
[Ref.: #25191]	leucine arylamidase	+	3.4.11.1
[Ref.: #25191]	naphthol-AS-BI-phosphohydrolase	-

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #24857]	14216	-	-	-	-	-	+	-	-	-	-	+	+	+	+/-	-	-	-	-	+	-	-	+	+	+	+	+	+	+	+	-	-	+	+	-	+	+	-	-	-	+	-	-	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24857]	Sample type/isolated from	intestinal contents of a Northern Bobwhite (Colinus virginianus)
[Ref.: #24857]	Host species	Colinus virginianus
[Ref.: #24857]	Geographic location (country and/or sea, region)	western Texas, San Angelo
[Ref.: #24857]	Country	USA
[Ref.: #24857]	Country ISO 3 Code	USA
[Ref.: #24857]	Continent	North America

[Ref.: #67771]	Sample type/isolated from	From the intestine of a Northern bobwhite quail, `Colinus virginianus`
[Ref.: #67771]	Geographic location (country and/or sea, region)	San Angelo, western Texas
[Ref.: #67771]	Country	USA
[Ref.: #67771]	Country ISO 3 Code	USA
[Ref.: #67771]	Continent	North America

[Ref.: #25191]	Enrichment culture	Columbia blood agar
[Ref.: #25191]	Enrichment culture composition	with 5 % sheep blood
[Ref.: #25191]	Enrichment culture duration	1 day
[Ref.: #25191]	Enrichment culture temperature	37 ̊C

[Ref.: #25191]	Enrichment culture	anaerobic PEA agar plates
[Ref.: #25191]	Enrichment culture duration	1 day
[Ref.: #25191]	Enrichment culture temperature	37 ̊C
* marker position based on {}

Isolation sources categories

#Host	#Birds	-
#Host Body-Site	#Gastrointestinal tract	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #24857]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24857]	Lactobacillus colini strain 111144-L1 16S ribosomal RNA gene, partial sequence	KU161105	1566	ENA	1819254 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Lactobacillus colini DSM 101872	GCA_017874575	contig	GenBank	1819254 tax ID	*
[Ref.: #66792]	Lactobacillus colini strain DSM 101872	1819254.3	wgs	PATRIC	1819254 tax ID	*
[Ref.: #66792]	Lactobacillus colini DSM 101872	2913564238	draft	JGI IMG/M	1819254 tax ID	*

[Ref.: #24857]	GC-content	35.6 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67771]	GC-content	35.6 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Lactobacillus colini strain DSM 101872 PATRIC: 1819254.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Lactobacillus colini strain DSM 101872 PATRIC: 1819254.3
[Ref.: #69480]	motile	no	95.963	yes
[Ref.: #69480]	gram-positive	yes	95.667	no
[Ref.: #69480]	anaerobic	yes	53.978	yes
[Ref.: #69480]	halophile	yes	70.081	no
[Ref.: #69480]	spore-forming	no	94.61	no
[Ref.: #69480]	glucose-util	yes	92.988	no
[Ref.: #69480]	flagellated	no	98.288	yes
[Ref.: #69480]	thermophile	no	97.901	yes
[Ref.: #69480]	aerobic	no	97.029	yes
[Ref.: #69480]	glucose-ferment	yes	91.823	no

Availability in culture collections External links

[Ref.: #24857]

Culture collection no.

DSM 101872, KCTC 21086

[Ref.: #91334]

SI-ID 396956

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Lactobacillus colini sp. nov., isolated from Northern Bobwhite (Colinus virginianus).	Zhang MZ, Yang M, Su H, Rollins D, Zhang S	Int J Syst Evol Microbiol	10.1099/ijsem.0.001624	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24857

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 101872

#25191

M. Z. Y. Zhang, M.,Su, H.,Rollins, D.,Zhang, S.: Lactobacillus colini sp. nov., isolated from Northern Bobwhite (Colinus virginianus). IJSEM 67: 325 - 329 2017 ( DOI 10.1099/ijsem.0.001624 , PubMed 27902241 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#68371

Automatically annotated from API 50CH acid .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#91334

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID396956.1 )

* These data were automatically processed and therefore are not curated

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Lactobacillus colini strain DSM 101872

Lactobacillus colini strain DSM 101872

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Change proposal