Allostreptomyces psammosilenae (DSM 42178, CGMCC 4.7247, YIM DR4008)

Name: Allostreptomyces psammosilenae (DSM 42178, CGMCC 4.7247, YIM DR4008)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133062

Type strain

Culture col. no. DSM 42178 CGMCC 4.7247 YIM DR4008

NCBI tax ID(s) 1892865

Special Collections DSMZ Literature strains

History DSMZ <- W.-J. Li, Yunnan Univ., Yunnan Inst. Microbiol. (YIM), Kunming, China; YIM DR4008 <- M.-J. Huang

Links

Allostreptomyces psammosilenae DSM 42178 is a spore-forming, Gram-positive bacterium that builds substrate mycelia and was isolated from surface-sterilized roots of Psammosilene tunicoides.

spore-forming Gram-positive genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 400405

DSM 42178

@ref 20215

Last LPSN update 2026-05-29 08:38:00

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Kitasatosporales

Family Streptomycetaceae

Genus Allostreptomyces

Species Allostreptomyces psammosilenae

Full scientific name Allostreptomyces psammosilenae Huang et al. 2017

Morphology

Cell morphology

@ref	Gram stain	Confidence
25169	positive
125438	positive	90.43
125439		93.436
125439	positive	98.74

Multicellular morphology

@ref	Forms multicellular complex	Complex name	Complex color	Medium name	Further description
25169		substrate mycelia	deep orange yellow - black	ISP 2	extensively branched
25169		aerial mycelia	white - light yellow green	ISP 2	carried straight chains of smooth surfaced spores

Multimedia

@ref:	24850
multimedia content:	DSM_42178.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_42178.jpg
caption:	Medium 987 28°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

@ref:	24850
multimedia content:	DSM_42178-1.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_42178-1.jpg
caption:	Medium 65 28°C
intellectual property rights:	Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
24850	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 20.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
25169	ISP 4
24850	ISP2 MEDIUM (DSMZ Medium 987)	Medium recipe at MediaDive	Name: ISP 2 MEDIUM (DSMZ Medium 987) Composition: Agar 20.0 g/l Malt extract 10.0 g/l Dextrose 4.0 g/l Yeast extract 4.0 g/l Distilled water
25169	nutritient agar (NA)

Culture temp

@ref	Growth	Type	Temperature (°C)
24850	positive	growth	28
25169	positive	growth	10-50
25169	positive	optimum	28-30

Culture pH

@ref	Ability	Type	PH	PH range
25169	positive	optimum	7
25169	positive	growth	5.0-11.0	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125438	aerobe	90.333
125439	obligate aerobe	98.328

Spore formation

@ref	Spore description	Type of spore	Confidence
25169	chains of smooth surfaced spores on aerial mycelia	spore
125439			91.027
125438			93.516

Halophily

@ref	Salt	Growth	Tested relation	Concentration
25169	NaCl		optimum	1 %
25169	NaCl	positive	growth	0.0-4.0 %(w/v)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
25169	17836 ChEBI	4-aminobenzoate	+	nitrogen source
25169	16449 ChEBI	alanine	+	nitrogen source
25169	17057 ChEBI	cellobiose	-	carbon source
25169	62968 ChEBI	cellulose	+	hydrolysis
25169	15824 ChEBI	D-fructose	-	carbon source
25169	12936 ChEBI	D-galactose	+	carbon source
25169	17924 ChEBI	D-sorbitol	-	carbon source
25169	65327 ChEBI	D-xylose	-	carbon source
25169	91260 ChEBI	disodium malate	+	carbon source
25169	5291 ChEBI	gelatin	+	hydrolysis
25169	17234 ChEBI	glucose	-	carbon source
25169	17754 ChEBI	glycerol	-	carbon source
25169	30849 ChEBI	L-arabinose	+	carbon source
25169	16467 ChEBI	L-arginine	-	nitrogen source
25169	29991 ChEBI	L-aspartate	-	nitrogen source
25169	16283 ChEBI	L-cystine	-	nitrogen source
25169	29985 ChEBI	L-glutamate	+	nitrogen source
25169	18050 ChEBI	L-glutamine	+	nitrogen source
25169	15971 ChEBI	L-histidine	-	nitrogen source
25169	18019 ChEBI	L-lysine	+	nitrogen source
25169	17295 ChEBI	L-phenylalanine	+	nitrogen source
25169	16857 ChEBI	L-threonine	+	nitrogen source
25169	16828 ChEBI	L-tryptophan	-	nitrogen source
25169	17895 ChEBI	L-tyrosine	+	nitrogen source
25169	16414 ChEBI	L-valine	+	nitrogen source
25169	17716 ChEBI	lactose	-	carbon source
25169	17306 ChEBI	maltose	+	carbon source
25169	29864 ChEBI	mannitol	-	carbon source
25169	37684 ChEBI	mannose	+	carbon source
25169	17268 ChEBI	myo-inositol	-	carbon source
25169	17632 ChEBI	nitrate	+	reduction
25169	16634 ChEBI	raffinose	+	carbon source
25169	26546 ChEBI	rhamnose	-	carbon source
25169	33942 ChEBI	ribose	-	carbon source
25169		skimmed milk	+	fermentation
25169	53258 ChEBI	sodium citrate	+	carbon source
25169	50144 ChEBI	sodium pyruvate	+	carbon source
25169	27922 ChEBI	sorbose	-	carbon source
25169	28017 ChEBI	starch	+	hydrolysis
25169	28017 ChEBI	starch	+	carbon source
25169	17992 ChEBI	sucrose	-	carbon source
25169	27082 ChEBI	trehalose	+	carbon source
25169	53424 ChEBI	tween 20	-	hydrolysis
25169	53423 ChEBI	tween 40	+	hydrolysis
25169	53425 ChEBI	tween 60	+	hydrolysis
25169	53426 ChEBI	tween 80	+	hydrolysis
25169	17151 ChEBI	xylitol	-	carbon source

Antibiotic resistance

@ref	ChEBI	Metabolite	Sensitivity conc.	Resistance conc.
25169	2637	amikacin	30 µg (disc)
25169	3517	cefuroxime	30 µg (disc)
25169	17698	chloramphenicol	30 µg (disc)
25169	100241	ciprofloxacin	5 µg (disc)
25169	48923	erythromycin	15 µg (disc)
25169	17833	gentamicin	10 µg (disc)
25169	100246	norfloxacin		10 µg (disc)
25169	28368	novobiocin	30 µg (disc)
25169	86455	optochin		5 µg (disc)
25169	7809	oxacillin		1 µg (disc)
25169	17334	penicillin	10 Unit (disc)
25169	8232	piperacillin	100 µg (disc)
25169	8309	polymyxin b	300 Unit (disc)
25169	9332	sulfamethoxazole		300 µg (disc)
25169	27902	tetracycline	30 µg (disc)
25169	28001	vancomycin		30 µg (disc)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
25169	16136 ChEBI	hydrogen sulfide

Enzymes

@ref	Value	Activity	Ec
25169	catalase	+	1.11.1.6
25169	cytochrome oxidase	+	1.9.3.1
25169	urease	-	3.5.1.5

Fatty acid profile

Metadata FA analysis

@ref

25169

Fatty acid	Percentage
C15:0 anteiso	34.5
C16:0	15.6
C16:0 iso	13.2
C15:0 iso	12.6
C17:0 anteiso	10.3

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Shrub (Scrub)
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root (Rhizome)
#Host Body-Site	#Plant	#Sterilized plant part

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent	Enrichment culture	Enrichment culture composition	Enrichment culture duration	Enrichment culture temperature
24850	surface-sterilized roots of Psammosilene tunicoides	Psammosilene tunicoides	Yunnan, Lijiang	China	CHN	Asia
25169	roots of Psammo- silene tunicoides						YECD medium	yeast 0.3 g/L, casein 0.3 g/L, glucose 0.3 g/l; bone meal 0.3 g/L, agar 1.3 g/L, pH 7.2, supplemented with nalidixic acid (25 mg/L) and nystatin (50 mg/L)	30 days	28

Taxonmaps

69479

Global distribution of 16S sequence KX689228 (>99% sequence identity) for Allostreptomyces from Microbeatlas

Aquatic Samples	38
Soil Samples	239
Animal Samples	192
Plant Samples	37
Total Samples	506

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
24850	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1340776v1 assembly for Allostreptomyces psammosilenae DSM 42178	contig	GCA_013407765	1892865.3	2823648918	1892865	75.05

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
24850	Allostreptomyces psammosilenae strain YIM DR4008 16S ribosomal RNA gene, partial sequence	KX689228	1510		1892865

GC content

@ref	GC-content (mol%)	Method
24850	75.3	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1340776v1 assembly for Allostreptomyces psammosilenae DSM 42178
NCBI: GCA_013407765

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.33	no
125439	gram_stain	BacteriaNetⓘ	positive	98.74	no
125439	motility	BacteriaNetⓘ	no	93.44	no
125439	spore_formation	BacteriaNetⓘ	yes	91.03	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Allostreptomyces psammosilenae strain DSM 42178
PATRIC: 1892865.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	90.43	yes
125438	anaerobic	anaerobicⓘ	no	98.63	no
125438	spore-forming	spore-formingⓘ	yes	93.52	yes
125438	aerobic	aerobicⓘ	yes	90.33	no
125438	thermophilic	thermophileⓘ	no	95.90	yes
125438	flagellated	motile2+ⓘ	no	86.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Biocontrol and plant growth promoting potential of phylogenetically new Streptomyces sp. MR14 of rhizospheric origin.	Kaur T, Rani R, Manhas RK.	AMB Express	10.1186/s13568-019-0849-7	2019
Phylogeny	Allostreptomyces indica sp. nov., isolated from India.	Sahu AK, Quadri SR, Agasar D, Ruwaili JA, Jun-Li W, Dastager SG.	J Antibiot (Tokyo)	10.1038/ja.2017.82	2017
Phylogeny	Allostreptomyces psammosilenae gen. nov., sp. nov., an endophytic actinobacterium isolated from the roots of Psammosilene tunicoides and emended description of the family Streptomycetaceae [Waksman and Henrici (1943)AL] emend. Rainey et al. 1997, emend. Kim et al. 2003, emend. Zhi et al. 2009.	Huang MJ, Rao MPN, Salam N, Xiao M, Huang HQ, Li WJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.001617	2017

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#24850	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 42178
#25169	M. J. R. Huang, M. P.,Salam, N.,Xiao, M.,Huang, H. Q.,Li, W. J.: Allostreptomyces psammosilenae gen. nov., sp. nov., an endophytic actinobacterium isolated from the roots of Psammosilene tunicoides and emended description of the family Streptomycetaceae [Waksman and Henrici (1943)AL] emend. Rainey et al. 1997, emend. Kim et al. 2003, emend. Zhi et al. 2009. IJSEM 67: 288 - 293 2017 ( DOI 10.1099/ijsem.0.001617 , PubMed 27902296 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Content

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Allostreptomyces psammosilenae (DSM 42178, CGMCC 4.7247, YIM DR4008)

Name and taxonomic classification

Morphology

Cell morphology

Multicellular morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Antibiotic resistance

Metabolite production

Enzymes

Fatty acid profile

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_013407765

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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