Kocuria oceani (DSM 24949, CGMCC 4.6946, FXJ8.095)

Name: Kocuria oceani (DSM 24949, CGMCC 4.6946, FXJ8.095)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133058

Type strain

Strain Designation FXJ8.095

Culture col. no. DSM 24949 CGMCC 4.6946 FXJ8.095

NCBI tax ID(s) 988827

Special Collections DSMZ Literature strains

History <- Y. Huang, Chinese Acad. Sci. (CAS), Beijing; CGMCC 4.6946 <- L. Xi

Links

Kocuria oceani FXJ8.095 is an aerobe bacterium that forms circular colonies and was isolated from seawater from deep sea hydrothermal plume, concentrated in situ.

colony-forming aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 397167

DSM 24949

@ref 20215

Last LPSN update 2026-02-09 11:31:51

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micrococcales

Family Micrococcaceae

Genus Kocuria

Species Kocuria oceani

Full scientific name Kocuria oceani Zhang et al. 2017

Morphology

Colony morphology

@ref	Colony color	Colony shape	Incubation period	Medium used
25153	pinkish orange	circular	3 days	ISP 2

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
25153	ISP 2
24846	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)		Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
24846	positive	growth	28
25153	positive	optimum	25-28
25153	positive	growth	4-40

Culture pH

@ref	Ability	Type	PH	PH range
25153	positive	optimum	7-8
25153	positive	growth	6-10	alkaliphile

Physiology and metabolism

Oxygen tolerance

25153

Oxygen toleranceaerobe

Spore formation

25153

Spore formationno

Halophily

@ref	Salt	Growth	Tested relation	Concentration
25153	NaCl	positive	growth	0-7 %(w/v)
25153	NaCl		optimum	3 %(w/v)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
25153	16708 ChEBI	adenine	-	hydrolysis
25153	36219 ChEBI	alpha-lactose	+	carbon source
25153		casein	-	hydrolysis
25153	17057 ChEBI	cellobiose	+	carbon source
25153	15824 ChEBI	D-fructose	+	carbon source
25153	12936 ChEBI	D-galactose	+	carbon source
25153	65327 ChEBI	D-xylose	+	carbon source
25153	17113 ChEBI	erythritol	-	carbon source
25153	5291 ChEBI	gelatin	+	hydrolysis
25153	17234 ChEBI	glucose	-	fermentation
25153	17234 ChEBI	glucose	+	carbon source
25153	16235 ChEBI	guanine	-	hydrolysis
25153	17368 ChEBI	hypoxanthine	-	hydrolysis
25153	30849 ChEBI	L-arabinose	+	carbon source
25153	62345 ChEBI	L-rhamnose	+	carbon source
25153	17306 ChEBI	maltose	+	carbon source
25153	29864 ChEBI	mannitol	+	carbon source
25153	37684 ChEBI	mannose	+	carbon source
25153	17632 ChEBI	nitrate	+	reduction
25153	16634 ChEBI	raffinose	+	carbon source
25153	33942 ChEBI	ribose	-	carbon source
25153		skimmed milk	+	degradation
25153	28017 ChEBI	starch	+	hydrolysis
25153	17992 ChEBI	sucrose	+	carbon source
25153		synanthrin	-	carbon source
25153	53424 ChEBI	tween 20	-	hydrolysis
25153	53423 ChEBI	tween 40	-	hydrolysis
25153	53426 ChEBI	tween 80	-	hydrolysis
25153	16199 ChEBI	urea	-	hydrolysis
25153	15318 ChEBI	xanthine	-	hydrolysis

Metabolite production

@ref	Chebi-ID	Metabolite
25153	15688 ChEBI	acetoin
25153	16136 ChEBI	hydrogen sulfide
25153	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test
25153	15688 ChEBI	acetoin	-
25153	17234 ChEBI	glucose		-

Enzymes

@ref	Value	Activity	Ec
25153	catalase	+	1.11.1.6
25153	cytochrome oxidase	-	1.9.3.1

Fatty acid profile

Metadata FA analysis

@ref

25153

Fatty acid	Percentage
C15:0 anteiso	65
C15:0 iso	18.1
C17:1 anteiso ω9c	3.2
C16:1ω6c / C16:1ω7c	2.4
C17:0 anteiso	1.7
C14:0 iso	1.5
10-Methyl C16:0 / iso-C17:1ω9c	0.9
C16:0 iso	0.9
C16:1 iso H	0.8
C14:0	0.8
C14:0 iso 3OH	0.7
C17:0 iso	0.6
iso-C17:1 I / anteiso-C17:1	0.6
C16:0	0.6
C18:1 2OH	0.5

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Bioremediation	#In situ
#Environmental	#Aquatic	#Hydrothermal vent
#Environmental	#Aquatic	#Marine
#Condition	#Thermophilic (>45°C)	-

Isolation

@ref	Sample type	Geographic location	Country	Latitude	Longitude	Sampling date
24846	seawater from deep sea hydrothermal plume, concentrated in situ	Indian Ridge (49° 39' E 37° 47' S) at a depth of 2800 m, High Sea	Indian Ocean	-37.7833	49.65 -37.7833/49.65
25153						2010-01

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
24846	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM4265210v1 assembly for Kocuria oceani CGMCC 4.6946	scaffold	GCA_042652105	988827	57.79
124043	ASM4265973v1 assembly for Kocuria oceani CGMCC-4.6946	scaffold	GCA_042659735	988827

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
24846	Kocuria oceani strain FXJ8.095 16S ribosomal RNA gene, partial sequence	JF346427	1450		988827

GC content

@ref	GC-content (mol%)	Method
25153	70.4-75.6	high performance liquid chromatography (HPLC)
24846	75.6	high performance liquid chromatography (HPLC)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Kocuria oceani sp. nov., isolated from a deep-sea hydrothermal plume.	Zhang L, Xi L, Ruan J, Huang Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.001599	2017

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#24846	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 24949
#25153	L. X. Zhang, L.,Ruan, J.,Huang, Y.: Kocuria oceani sp. nov., isolated from a deep-sea hydrothermal plume. IJSEM 67: 164 - 169 2017 ( DOI 10.1099/ijsem.0.001599 , PubMed 27902231 )
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Kocuria oceani (DSM 24949, CGMCC 4.6946, FXJ8.095)

Name and taxonomic classification

Morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

Fatty acid profile

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_042652105

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

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