Name: Streptomyces capparidis DSM 42145
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133057

Type strain:

Species: Streptomyces capparidis

Culture col. no.: DSM 42145, JCM 30089, EGI 6500195

Strain history: W.-J. Li EGI 6500195.

NCBI tax ID(s): 1840415 (species)

SI-ID 405132

DSM 42145

Section

Streptomyces capparidis DSM 42145 is a spore-forming bacterium that was isolated from surface-sterilized fruit of Capparis spinosa L..

spore-forming
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces capparidis**
	Full Scientific Name (LPSN)	Streptomyces capparidis Wang et al. 2017

Information on culture and growth conditions Culture and growth conditions

[Ref.: #24845]

Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

[Ref.: #25162]

Culture medium

ISP 3

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Culture medium growth

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Culture medium

ISP 5

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Culture medium growth

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Culture medium

ISP 4

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Culture medium growth

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Culture medium

Czapek ´s media

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Culture medium growth

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #24845]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #24845]	growth	28 °C
[Ref.: #25162]	growth	10-45 °C
[Ref.: #25162]	optimum	30 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #24845]	Temperature range	mesophilic
[Ref.: #25162]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #25162]			optimum	7
[Ref.: #25162]			growth	6.0-8.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #25162]	Spore description	straight or flexuous chains and smooth surface
[Ref.: #25162]	Type of spore	spore
[Ref.: #25162]	Ability of spore formation	yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #25162]		NaCl		growth	0-1	%(w/v)
[Ref.: #25162]		NaCl		optimum	0	%(w/v)

[Ref.: #67770]

Observation

quinones: MK-9(H₆), MK-9(H₈)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #25162]	casein	+	hydrolysis
[Ref.: #25162]	cellobiose ChEBI	+	carbon source
[Ref.: #25162]	cellulose ChEBI	-	hydrolysis
[Ref.: #25162]	D-fructose ChEBI	+	carbon source
[Ref.: #25162]	D-galactose ChEBI	+	carbon source
[Ref.: #25162]	D-glucose ChEBI	+	carbon source
[Ref.: #25162]	D-ribose ChEBI	-	carbon source
[Ref.: #25162]	D-sorbitol ChEBI	+	carbon source
[Ref.: #25162]	D-xylose ChEBI	-	carbon source
[Ref.: #25162]	glucose ChEBI	-	fermentation
[Ref.: #25162]	glycerol ChEBI	+	carbon source
[Ref.: #25162]	glycine ChEBI	+	nitrogen source
[Ref.: #25162]	L-arabinose ChEBI	-	carbon source
[Ref.: #25162]	L-arginine ChEBI	-	nitrogen source
[Ref.: #25162]	L-aspartate ChEBI	+	nitrogen source
[Ref.: #25162]	L-cysteine ChEBI	-	nitrogen source
[Ref.: #25162]	L-glutamate ChEBI	-	nitrogen source
[Ref.: #25162]	L-histidine ChEBI	+	nitrogen source
[Ref.: #25162]	L-isoleucine ChEBI	+	nitrogen source
[Ref.: #25162]	L-lysine ChEBI	-	nitrogen source
[Ref.: #25162]	L-methionine ChEBI	+	nitrogen source
[Ref.: #25162]	L-phenylalanine ChEBI	+	nitrogen source
[Ref.: #25162]	L-rhamnose ChEBI	-	carbon source
[Ref.: #25162]	L-serine ChEBI	+	nitrogen source
[Ref.: #25162]	L-threonine ChEBI	+	nitrogen source
[Ref.: #25162]	L-tryptophan ChEBI	-	nitrogen source
[Ref.: #25162]	L-valine ChEBI	+	nitrogen source
[Ref.: #25162]	mannose ChEBI	-	carbon source
[Ref.: #25162]	melibiose ChEBI	-	carbon source
[Ref.: #25162]	myo-inositol ChEBI	-	carbon source
[Ref.: #25162]	nitrate ChEBI	+	reduction
[Ref.: #25162]	raffinose ChEBI	-	carbon source
[Ref.: #25162]	skimmed milk	+	degradation
[Ref.: #25162]	trehalose ChEBI	-	carbon source
[Ref.: #25162]	tween 20 ChEBI	+	hydrolysis
[Ref.: #25162]	tween 40 ChEBI	+	hydrolysis
[Ref.: #25162]	tween 60 ChEBI	+	hydrolysis
[Ref.: #25162]	tween 80 ChEBI	+	hydrolysis
[Ref.: #25162]	xylitol ChEBI	-	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #25162]		hydrogen sulfide ChEBI	no

	Physiological tests	Metabolite	Methylred-test
[Ref.: #25162]		glucose ChEBI	-

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #25162]		catalase	+	1.11.1.6

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #25162]

Fatty acid	Percentage
C15:0 anteiso	19.4
C17:0 anteiso	18.7
C15:0 iso	15.6
C16:0 iso	15.1
C17:1 anteiso ω9c	7.4

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24845]	Sample type/isolated from	surface-sterilized fruit of Capparis spinosa L.
[Ref.: #24845]	Host species	Capparis spinosa
[Ref.: #24845]	Geographic location (country and/or sea, region)	Xinjiang Province, Urumqi city
[Ref.: #24845]	Country	China
[Ref.: #24845]	Country ISO 3 Code	CHN
[Ref.: #24845]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Fruits of Capparis spinosa L.
[Ref.: #67770]	Host species	Capparis spinosa
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Fruit (Seed)
#Host Body-Site	#Plant	#Sterilized plant part

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

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Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24845]	Streptomyces capparidis strain EGI 6500195 16S ribosomal RNA gene, partial sequence	KX119420	1532	ENA	1840415 tax ID

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GC-content

74.1 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

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Culture collection no.

DSM 42145, JCM 30089, EGI 6500195

[Ref.: #91324]

SI-ID 405132

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces capparidis sp. nov., a novel endophytic actinobacterium isolated from fruits of Capparis spinosa L.	Wang HF, Li QL, Xiao M, Zhang YG, Zhou XK, Narsing Rao MP, Duan YQ, Li WJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.001586	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24845

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 42145

#25162

H. F. L. Wang, Q. L.,Xiao, M.,Zhang, Y. G.,Zhou, X. K.,Narsing Rao, M. P.,Duan, Y. Q.,Li, W. J.: Streptomyces capparidis sp. nov., a novel endophytic actinobacterium isolated from fruits of Capparis spinosa L. IJSEM 67: 133 - 137 2017 ( DOI 10.1099/ijsem.0.001586 , PubMed 27902318 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#91324

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID405132.1 )

* These data were automatically processed and therefore are not curated

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