Name: Luteimonas padinae DSM 101536
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 133046

Type strain:

Species: Luteimonas padinae

Culture col. no.: DSM 101536, KCTC 52403, CDR SL 15

Strain history: <- S. Krishnamurthi, Institute of Microbial Technology CSIR, Chandigarh, India; CDR SL 15

NCBI tax ID(s): 1714359 (species)

Section

Luteimonas padinae DSM 101536 is an obligate aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from surface of a marine brown macroalga from an intertidal region.

colony-forming
Gram-negative
rod-shaped
obligate aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Lysobacterales*
	Family	*Lysobacteraceae*
	Genus	*Luteimonas*
	Species	**Luteimonas padinae**
	Full Scientific Name (LPSN)	Luteimonas padinae Verma et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #25065]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %98.724

[Ref.: #25065]	Cell length	0.6-1.0 µm

[Ref.: #25065]	Cell width	0.1-0.3 µm

[Ref.: #25065]	Cell shape	rod-shaped

[Ref.: #25065]	Motility	no

[Ref.: #25065]	Colony color	yellow
[Ref.: #25065]	Colony shape	circular
[Ref.: #25065]	Incubation period	1 day
[Ref.: #25065]	Cultivation medium used	MA (marine agar)

Information on culture and growth conditions Culture and growth conditions

[Ref.: #25065]

Culture medium

Marine agar (MA)

[Ref.: #25065]

Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #25065]			growth	30 °C
[Ref.: #25065]			optimum	30.0-35.0 °C

	pH	Kind of pH		pH
[Ref.: #25065]			optimum	7.0-7.5
[Ref.: #25065]			growth	5.0-9.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #25065]

Oxygen tolerance

obligate aerobe

[Ref.: #25065]	Ability of spore formation	no
[Ref.: #69480]	Ability of spore formation	no Confidence in %96.308
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #25065]		NaCl		growth	0.0-4.0	%(w/v)
[Ref.: #25065]		NaCl		optimum	2	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #25065]	acetate ChEBI	+	assimilation
[Ref.: #25065]	casein	-	hydrolysis
[Ref.: #25065]	D-glucose ChEBI	+	builds acid from
[Ref.: #25065]	esculin ChEBI	-	hydrolysis
[Ref.: #25065]	formate ChEBI	-	assimilation
[Ref.: #25065]	galactose ChEBI	+	builds acid from
[Ref.: #25065]	gelatin ChEBI	+	hydrolysis
[Ref.: #25065]	glucose ChEBI	-	fermentation
[Ref.: #25065]	glycine-proline ChEBI	-	assimilation
[Ref.: #25065]	glycyl L-aspartic acid ChEBI	+	assimilation
[Ref.: #25065]	glycyl-l-glutamate ChEBI	+	assimilation
[Ref.: #25065]	L-pyroglutamic acid ChEBI	-	assimilation
[Ref.: #25065]	maltose ChEBI	+	builds acid from
[Ref.: #25065]	propionate ChEBI	+	assimilation
[Ref.: #25065]	ribitol ChEBI	+	builds acid from
[Ref.: #25065]	starch ChEBI	-	hydrolysis
[Ref.: #25065]	tryptophan ChEBI	-	energy source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #25065]	amikacin ChEBI	yes
[Ref.: #25065]	amoxicillin ChEBI	yes
[Ref.: #25065]	ampicillin ChEBI	yes
[Ref.: #25065]	cefadroxil ChEBI		yes
[Ref.: #25065]	cefoperazone ChEBI	yes
[Ref.: #25065]	ceftriaxone ChEBI	yes
[Ref.: #25065]	chloramphenicol ChEBI	yes
[Ref.: #25065]	ciprofloxacin ChEBI	yes
[Ref.: #25065]	co-trimoxazole ChEBI		yes
[Ref.: #25065]	erythromycin ChEBI	yes
[Ref.: #25065]	gentamicin ChEBI	yes
[Ref.: #25065]	nalidixic acid ChEBI	yes
[Ref.: #25065]	netilmycin ChEBI	yes
[Ref.: #25065]	nitrofurantoin ChEBI		yes
[Ref.: #25065]	norfloxacin ChEBI	yes
[Ref.: #25065]	penicillin ChEBI	yes
[Ref.: #25065]	tobramycin ChEBI	yes
[Ref.: #25065]	vancomycin ChEBI	yes
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #25065]	acetoin ChEBI	no
[Ref.: #25065]	hydrogen sulfide ChEBI	no
[Ref.: #25065]	indole ChEBI	no

	Metabolite	Voges-Proskauer-test	Methylred-test	Indole test
[Ref.: #25065]	acetoin ChEBI	-
[Ref.: #25065]	glucose ChEBI		-
[Ref.: #25065]	indole ChEBI			-

	Enzyme	Enzyme activity	EC number
[Ref.: #25065]	alkaline phosphatase	+	3.1.3.1
[Ref.: #25065]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #25065]	alpha-fucosidase	-	3.2.1.51
[Ref.: #25065]	alpha-galactosidase	-	3.2.1.22
[Ref.: #25065]	alpha-glucosidase	-	3.2.1.20
[Ref.: #25065]	alpha-mannosidase	-	3.2.1.24
[Ref.: #25065]	arginine dihydrolase	-	3.5.3.6
[Ref.: #25065]	beta-galactosidase	-	3.2.1.23
[Ref.: #25065]	beta-glucuronidase	-	3.2.1.31
[Ref.: #25065]	catalase	+	1.11.1.6
[Ref.: #25065]	cystine arylamidase	-	3.4.11.3
[Ref.: #25065]	cytochrome oxidase	+	1.9.3.1
[Ref.: #25065]	esterase	+
[Ref.: #25065]	esterase Lipase (C 8)	+
[Ref.: #25065]	leucine arylamidase	+	3.4.11.1
[Ref.: #25065]	lipase	-
[Ref.: #25065]	lysine decarboxylase	-	4.1.1.18
[Ref.: #25065]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #25065]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #25065]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #25065]	trypsin	-	3.4.21.4
[Ref.: #25065]	tryptophan deaminase	-	4.1.99.1
[Ref.: #25065]	tryptophan deaminase	+	4.1.99.1
[Ref.: #25065]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24834]	Sample type/isolated from	surface of a marine brown macroalga (Padina sp.) from an intertidal region
[Ref.: #24834]	Host species	Padina
[Ref.: #24834]	Geographic location (country and/or sea, region)	Goa, Cabo de Rama beach (15° 06.313' N 073° 55.437' E)
[Ref.: #24834]	Country	India
[Ref.: #24834]	Country ISO 3 Code	IND
[Ref.: #24834]	Continent	Asia
[Ref.: #24834]	Geographic location	15.1053°/73.9239°

[Ref.: #25065]	Enrichment culture	marine agar (MA; Hi-Media)
[Ref.: #25065]	Enrichment culture duration	14-28 days
[Ref.: #25065]	Enrichment culture temperature	30 ̊C
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Terrestrial	#Tidal flat
#Host	#Algae	#Brown Algae

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LN879436 (>99% sequence identity) for Luteimonas from Microbeatlas

Aquatic Samples	824
Soil Samples	971
Animal Samples	1379
Plant Samples	378
Total Samples	3552

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24834]	Luteimonas sp. CDR-SL15 partial 16S rRNA gene, isolate CDR-SL15	LN879436	1422	GenBank ENA	1714359 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Luteimonas padinae KCTC 52403	GCA_014652935	contig	GenBank ENA	1714359 tax ID	*
[Ref.: #66792]	Luteimonas padinae strain KCTC 52403	1714359.3	wgs	PATRIC	1714359 tax ID	*

[Ref.: #24834]	GC-content	73.4 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #25065]	GC-content	73.4 mol%	Thermal denaturation, fluorometry

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Luteimonas padinae strain KCTC 52403 PATRIC: 1714359.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Luteimonas padinae strain KCTC 52403 PATRIC: 1714359.3
[Ref.: #69480]	motile	no	77.925	yes
[Ref.: #69480]	gram-positive	no	98.724	yes
[Ref.: #69480]	anaerobic	no	98.595	yes
[Ref.: #69480]	aerobic	yes	92.13	yes
[Ref.: #69480]	halophile	no	91.666	no
[Ref.: #69480]	spore-forming	no	96.308	yes
[Ref.: #69480]	glucose-util	yes	79.152	no
[Ref.: #69480]	flagellated	no	95.296	yes
[Ref.: #69480]	glucose-ferment	no	91.903	yes
[Ref.: #69480]	thermophile	no	98.899	no

Availability in culture collections External links

[Ref.: #24834]

Culture collection no.

DSM 101536, KCTC 52403, CDR SL 15

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Luteimonas granuli sp. nov., Isolated from Granules of the Wastewater Treatment Plant.	Siddiqi MZ, Yeon JM, Choi H, Lee JH, Kim SY, Wee JH, Im WT	Curr Microbiol	10.1007/s00284-020-02066-4	2020	*
Phylogeny	Luteimonas cellulosilyticus sp. nov., Cellulose-Degrading Bacterium Isolated from Soil in Changguangxi National Wetland Park, China.	Lin P, Yan ZF, Li CT	Curr Microbiol	10.1007/s00284-020-01934-3	2020	*
Phylogeny	Luteimonas padinae sp. nov., an epiphytic bacterium isolated from an intertidal macroalga.	Verma A, Ojha AK, Kumari P, Sundharam SS, Mayilraj S, Krishnamurthi S	Int J Syst Evol Microbiol	10.1099/ijsem.0.001539	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24834

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 101536

#25065

A. O. Verma, A. K.,Kumari, P.,Sundharam, S. S.,Mayilraj, S.,Krishnamurthi, S.: Luteimonas padinae sp. nov., an epiphytic bacterium isolated from an intertidal macroalga. IJSEM 66: 5444 - 5451 2016 ( DOI 10.1099/ijsem.0.001539 , PubMed 27707430 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Luteimonas padinae strain KCTC 52403

Luteimonas padinae strain KCTC 52403

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