Microbacterium sorbitolivorans (DSM 103422, CGMCC 1.15228, SZDIS-1-1)

Name: Microbacterium sorbitolivorans (DSM 103422, CGMCC 1.15228, SZDIS-1-1)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133022

Type strain

Strain Designation SZDIS-1-1

Culture col. no. DSM 103422 CGMCC 1.15228 SZDIS-1-1

NCBI tax ID(s) 1867410

Special Collections DSMZ Literature strains

History DSMZ <- M. Cai, Institute Of Microbiology, Chinese Academy of Sciences, Beijing, China; SZDIS-1-1

Links

Microbacterium sorbitolivorans SZDIS-1-1 is a facultative anaerobe, Gram-positive, rod-shaped bacterium that forms circular colonies and was isolated from fermentation bed of a pigpen.

Gram-positive rod-shaped colony-forming facultative anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 400044

DSM 103422

@ref 20215

Last LPSN update 2026-05-29 08:37:59

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micrococcales

Family Microbacteriaceae

Genus Microbacterium

Species Microbacterium sorbitolivorans

Full scientific name Microbacterium sorbitolivorans Meng et al. 2016

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
25049	positive	1.52-1.83 µm	0.65-1.1 µm	rod-shaped

Colony morphology

@ref	Colony color	Colony shape
25049	pale yellow	circular

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
24810	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)		Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
24810	positive	growth	28
25049	positive	growth	10-40
25049	positive	optimum	30

Culture pH

@ref	Ability	Type	PH	PH range
25049	positive	optimum	7
25049	positive	growth	6.0-9.0	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
25049	facultative anaerobe
125439	obligate aerobe	93.124

Spore formation

@ref	Spore formation	Confidence
125439		98.498

Halophily

@ref	Salt	Growth	Tested relation	Concentration
25049	NaCl		optimum	0 %
25049	NaCl	positive	growth	0-11.0 %(w/v)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
25049	16651 ChEBI	(S)-lactate	+	carbon source
25049	16651 ChEBI	(S)-lactate	+	nitrogen source
25049	16808 ChEBI	2-dehydro-D-gluconate	-	builds acid from
25049	64552 ChEBI	2-hydroxybutyrate	+	carbon source
25049	64552 ChEBI	2-hydroxybutyrate	+	nitrogen source
25049	17426 ChEBI	5-dehydro-D-gluconate	-	builds acid from
25049	30089 ChEBI	acetate	+	carbon source
25049	30089 ChEBI	acetate	+	nitrogen source
25049	13705 ChEBI	acetoacetate	+	carbon source
25049	13705 ChEBI	acetoacetate	+	nitrogen source
25049	17925 ChEBI	alpha-D-glucose	+	carbon source
25049	17925 ChEBI	alpha-D-glucose	+	nitrogen source
25049	27613 ChEBI	amygdalin	+	builds acid from
25049	18305 ChEBI	arbutin	+	builds acid from
25049	17057 ChEBI	cellobiose	+	builds acid from
25049	17057 ChEBI	cellobiose	+	carbon source
25049	17057 ChEBI	cellobiose	+	nitrogen source
25049	16947 ChEBI	citrate	+	carbon source
25049	16947 ChEBI	citrate	+	nitrogen source
25049	18333 ChEBI	D-arabitol	+	carbon source
25049	18333 ChEBI	D-arabitol	+	nitrogen source
25049	15824 ChEBI	D-fructose	+	builds acid from
25049	15824 ChEBI	D-fructose	+	carbon source
25049	15824 ChEBI	D-fructose	+	nitrogen source
25049	78697 ChEBI	D-fructose 6-phosphate	+	carbon source
25049	78697 ChEBI	D-fructose 6-phosphate	+	nitrogen source
25049	12936 ChEBI	D-galactose	+	builds acid from
25049	12936 ChEBI	D-galactose	+	carbon source
25049	12936 ChEBI	D-galactose	+	nitrogen source
25049	8391 ChEBI	D-gluconate	+	carbon source
25049	8391 ChEBI	D-gluconate	+	nitrogen source
25049	17634 ChEBI	D-glucose	+	builds acid from
25049	62318 ChEBI	D-lyxose	+	builds acid from
25049	16899 ChEBI	D-mannitol	+	builds acid from
25049	16899 ChEBI	D-mannitol	+	carbon source
25049	16899 ChEBI	D-mannitol	+	nitrogen source
25049	16024 ChEBI	D-mannose	+	builds acid from
25049	16024 ChEBI	D-mannose	+	carbon source
25049	16024 ChEBI	D-mannose	+	nitrogen source
25049	16988 ChEBI	D-ribose	+	builds acid from
25049	17924 ChEBI	D-sorbitol	-	builds acid from
25049	17924 ChEBI	D-sorbitol	+	carbon source
25049	17924 ChEBI	D-sorbitol	+	nitrogen source
25049	16443 ChEBI	D-tagatose	-	builds acid from
25049	65327 ChEBI	D-xylose	+	builds acid from
25049	23652 ChEBI	dextrin	+	carbon source
25049	23652 ChEBI	dextrin	+	nitrogen source
25049	17113 ChEBI	erythritol	+	builds acid from
25049	4853 ChEBI	esculin	+	degradation
25049	4853 ChEBI	esculin	+	builds acid from
25049		esculin ferric citrate	+	builds acid from
25049	33984 ChEBI	fucose	-	builds acid from
25049	16813 ChEBI	galactitol	-	builds acid from
25049	28066 ChEBI	gentiobiose	+	builds acid from
25049	28066 ChEBI	gentiobiose	+	carbon source
25049	28066 ChEBI	gentiobiose	+	nitrogen source
25049	17754 ChEBI	glycerol	+	builds acid from
25049	17754 ChEBI	glycerol	+	carbon source
25049	17754 ChEBI	glycerol	+	nitrogen source
25049	28087 ChEBI	glycogen	+	builds acid from
25049	17596 ChEBI	inosine	+	carbon source
25049	17596 ChEBI	inosine	+	nitrogen source
25049	30849 ChEBI	L-arabinose	+	builds acid from
25049	18403 ChEBI	L-arabitol	-	builds acid from
25049	29991 ChEBI	L-aspartate	+	carbon source
25049	29991 ChEBI	L-aspartate	+	nitrogen source
25049	18287 ChEBI	L-fucose	+	carbon source
25049	18287 ChEBI	L-fucose	+	nitrogen source
25049	29985 ChEBI	L-glutamate	+	carbon source
25049	29985 ChEBI	L-glutamate	+	nitrogen source
25049	62345 ChEBI	L-rhamnose	+	builds acid from
25049	62345 ChEBI	L-rhamnose	+	carbon source
25049	62345 ChEBI	L-rhamnose	+	nitrogen source
25049	17266 ChEBI	L-sorbose	-	builds acid from
25049	17716 ChEBI	lactose	+	builds acid from
25049	17716 ChEBI	lactose	+	carbon source
25049	17716 ChEBI	lactose	+	nitrogen source
25049	17306 ChEBI	maltose	+	builds acid from
25049	17306 ChEBI	maltose	+	carbon source
25049	17306 ChEBI	maltose	+	nitrogen source
25049	6731 ChEBI	melezitose	+	builds acid from
25049	28053 ChEBI	melibiose	+	builds acid from
25049	28053 ChEBI	melibiose	+	carbon source
25049	28053 ChEBI	melibiose	+	nitrogen source
25049	320055 ChEBI	methyl beta-D-glucopyranoside	+	carbon source
25049	320055 ChEBI	methyl beta-D-glucopyranoside	+	nitrogen source
25049	17268 ChEBI	myo-inositol	-	builds acid from
25049	506227 ChEBI	N-acetylglucosamine	+	builds acid from
25049	506227 ChEBI	N-acetylglucosamine	+	carbon source
25049	506227 ChEBI	N-acetylglucosamine	+	nitrogen source
25049	17632 ChEBI	nitrate	-	reduction
25049	17309 ChEBI	pectin	+	carbon source
25049	17309 ChEBI	pectin	+	nitrogen source
25049	32032 ChEBI	potassium gluconate	-	builds acid from
25049	16634 ChEBI	raffinose	+	builds acid from
25049	16634 ChEBI	raffinose	+	carbon source
25049	16634 ChEBI	raffinose	+	nitrogen source
25049	17814 ChEBI	salicin	+	builds acid from
25049	17814 ChEBI	salicin	+	carbon source
25049	17814 ChEBI	salicin	+	nitrogen source
25049	17164 ChEBI	stachyose	+	carbon source
25049	17164 ChEBI	stachyose	+	nitrogen source
25049	28017 ChEBI	starch	+	builds acid from
25049	17992 ChEBI	sucrose	+	builds acid from
25049	17992 ChEBI	sucrose	+	carbon source
25049	17992 ChEBI	sucrose	+	nitrogen source
25049	27082 ChEBI	trehalose	+	builds acid from
25049	27082 ChEBI	trehalose	+	carbon source
25049	27082 ChEBI	trehalose	+	nitrogen source
25049	27897 ChEBI	tryptophan	-	energy source
25049	32528 ChEBI	turanose	+	builds acid from
25049	32528 ChEBI	turanose	+	carbon source
25049	32528 ChEBI	turanose	+	nitrogen source
25049	53423 ChEBI	tween 40	+	carbon source
25049	53423 ChEBI	tween 40	+	nitrogen source
25049	16199 ChEBI	urea	-	hydrolysis
25049	17151 ChEBI	xylitol	+	builds acid from

Antibiotic resistance

@ref	ChEBI	Metabolite
25049	2955	azithromycin
25049	3508	ceftazidime
25049	17698	chloramphenicol
25049	3745	clindamycin
25049	31810	fleroxacin
25049	116278	lomefloxacin
25049	71415	nitrofurantoin
25049	7809	oxacillin
25049	9332	sulfamethoxazole
25049	27902	tetracycline

Metabolite production

@ref	Chebi-ID	Metabolite	Production
25049	15688 ChEBI	acetoin
25049	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Indole test
25049	15688 ChEBI	acetoin	+
25049	35581 ChEBI	indole		-

Enzymes

@ref	Value	Activity	Ec
25049	acid phosphatase	-	3.1.3.2
25049	alkaline phosphatase	-	3.1.3.1
25049	alpha-chymotrypsin	-	3.4.21.1
25049	alpha-fucosidase	-	3.2.1.51
25049	alpha-galactosidase	-	3.2.1.22
25049	alpha-glucosidase	+	3.2.1.20
25049	alpha-mannosidase	-	3.2.1.24
25049	arginine dihydrolase	-	3.5.3.6
25049	beta-glucosidase	+	3.2.1.21
25049	beta-glucuronidase	-	3.2.1.31
25049	catalase	+	1.11.1.6
25049	cystine arylamidase	+	3.4.11.3
25049	esterase lipase (C 8)	+
25049	leucine arylamidase	+	3.4.11.1
25049	lipase	-
25049	lysine decarboxylase	-	4.1.1.18
25049	N-acetyl-beta-glucosaminidase	+	3.2.1.52
25049	naphthol-AS-BI-phosphohydrolase	-
25049	ornithine decarboxylase	-	4.1.1.17
25049	tryptophan deaminase	-	4.1.99.1
25049	valine arylamidase	-

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	cellulose degradation	100	5 of 5
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	glycogen metabolism	100	5 of 5
66794	acetate fermentation	100	4 of 4
66794	palmitate biosynthesis	100	22 of 22
66794	ppGpp biosynthesis	100	4 of 4
66794	methylglyoxal degradation	100	5 of 5
66794	adipate degradation	100	2 of 2
66794	ketogluconate metabolism	100	8 of 8
66794	phenylmercury acetate degradation	100	2 of 2
66794	vitamin K metabolism	100	5 of 5
66794	pentose phosphate pathway	100	11 of 11
66794	coenzyme A metabolism	100	4 of 4
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	suberin monomers biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	folate polyglutamylation	100	1 of 1
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	formaldehyde oxidation	100	3 of 3
66794	ribulose monophosphate pathway	100	2 of 2
66794	photosynthesis	92.86	13 of 14
66794	threonine metabolism	90	9 of 10
66794	Entner Doudoroff pathway	90	9 of 10
66794	chorismate metabolism	88.89	8 of 9
66794	CO2 fixation in Crenarchaeota	88.89	8 of 9
66794	gluconeogenesis	87.5	7 of 8
66794	flavin biosynthesis	86.67	13 of 15
66794	peptidoglycan biosynthesis	86.67	13 of 15
66794	phenylalanine metabolism	84.62	11 of 13
66794	factor 420 biosynthesis	80	4 of 5
66794	heme metabolism	78.57	11 of 14
66794	valine metabolism	77.78	7 of 9
66794	serine metabolism	77.78	7 of 9
66794	pyrimidine metabolism	77.78	35 of 45
66794	purine metabolism	75.53	71 of 94
66794	sulfopterin metabolism	75	3 of 4
66794	glycogen biosynthesis	75	3 of 4
66794	glutamate and glutamine metabolism	75	21 of 28
66794	cyclohexanol degradation	75	3 of 4
66794	degradation of sugar alcohols	75	12 of 16
66794	C4 and CAM-carbon fixation	75	6 of 8
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	proline metabolism	72.73	8 of 11
66794	NAD metabolism	72.22	13 of 18
66794	degradation of pentoses	71.43	20 of 28
66794	glycolysis	70.59	12 of 17
66794	myo-inositol biosynthesis	70	7 of 10
66794	starch degradation	70	7 of 10
66794	vitamin B1 metabolism	69.23	9 of 13
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	acetyl CoA biosynthesis	66.67	2 of 3
66794	octane oxidation	66.67	2 of 3
66794	glycolate and glyoxylate degradation	66.67	4 of 6
66794	degradation of hexoses	66.67	12 of 18
66794	molybdenum cofactor biosynthesis	66.67	6 of 9
66794	acetoin degradation	66.67	2 of 3
66794	aspartate and asparagine metabolism	66.67	6 of 9
66794	d-mannose degradation	66.67	6 of 9
66794	alanine metabolism	65.52	19 of 29
66794	metabolism of disaccharids	63.64	7 of 11
66794	d-xylose degradation	63.64	7 of 11
66794	non-pathway related	63.16	24 of 38
66794	oxidative phosphorylation	62.64	57 of 91
66794	dTDPLrhamnose biosynthesis	62.5	5 of 8
66794	arginine metabolism	62.5	15 of 24
66794	isoleucine metabolism	62.5	5 of 8
66794	leucine metabolism	61.54	8 of 13
66794	methionine metabolism	61.54	16 of 26
66794	isoprenoid biosynthesis	61.54	16 of 26
66794	metabolism of amino sugars and derivatives	60	3 of 5
66794	lipoate biosynthesis	60	3 of 5
66794	reductive acetyl coenzyme A pathway	57.14	4 of 7
66794	ubiquinone biosynthesis	57.14	4 of 7
66794	tetrahydrofolate metabolism	57.14	8 of 14
66794	citric acid cycle	57.14	8 of 14
66794	propanol degradation	57.14	4 of 7
66794	degradation of sugar acids	56	14 of 25
66794	histidine metabolism	55.17	16 of 29
66794	lipid metabolism	54.84	17 of 31
66794	urea cycle	53.85	7 of 13
66794	butanoate fermentation	50	2 of 4
66794	lactate fermentation	50	2 of 4
66794	cysteine metabolism	50	9 of 18
66794	ethanol fermentation	50	1 of 2
66794	degradation of aromatic, nitrogen containing compounds	50	6 of 12
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	tryptophan metabolism	50	19 of 38
66794	kanosamine biosynthesis II	50	1 of 2
66794	quinate degradation	50	1 of 2
66794	lysine metabolism	47.62	20 of 42
66794	ascorbate metabolism	45.45	10 of 22
66794	vitamin B6 metabolism	45.45	5 of 11
66794	nitrate assimilation	44.44	4 of 9
66794	androgen and estrogen metabolism	43.75	7 of 16
66794	cardiolipin biosynthesis	42.86	3 of 7
66794	glutathione metabolism	42.86	6 of 14
66794	benzoyl-CoA degradation	42.86	3 of 7
66794	arachidonate biosynthesis	40	2 of 5
66794	propionate fermentation	40	4 of 10
66794	4-hydroxyphenylacetate degradation	40	4 of 10
66794	glycine metabolism	40	4 of 10
66794	sulfate reduction	38.46	5 of 13
66794	phenylpropanoid biosynthesis	38.46	5 of 13
66794	tyrosine metabolism	35.71	5 of 14
66794	phenol degradation	35	7 of 20
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	lipid A biosynthesis	33.33	3 of 9
66794	IAA biosynthesis	33.33	1 of 3
66794	cyanate degradation	33.33	1 of 3
66794	enterobactin biosynthesis	33.33	1 of 3
66794	4-hydroxymandelate degradation	33.33	3 of 9
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	toluene degradation	25	1 of 4
66794	CMP-KDO biosynthesis	25	1 of 4
66794	allantoin degradation	22.22	2 of 9
66794	arachidonic acid metabolism	22.22	4 of 18

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Agriculture	#Livestock (Husbandry)
#Host	#Mammals	#Suidae (Pig,Swine)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Enrichment culture	Enrichment culture composition	Enrichment culture duration	Enrichment culture temperature
24810	fermentation bed of a pigpen	Fujian Province, Xiamen	China	CHN	Asia
25049						dextran-inorganic salt agar plates	1/l: 10g dextran, 2g KNO3, 0.05g MgSO4.7H2O, 2g K2HPO4.3H2O, 0.02g CaCO3, 0.01g FeSO4.7H2O, 10g NaCl, 2g KCl, 3g MgSO4.6H2O	7 days	30

Taxonmaps

69479

Global distribution of 16S sequence KX250270 (>99% sequence identity) for Microbacterium from Microbeatlas

Aquatic Samples	62
Soil Samples	83
Animal Samples	474
Plant Samples	36
Total Samples	655

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
24810	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM332728v1 assembly for Microbacterium sorbitolivorans CGMCC 1.15228	scaffold	GCA_003327285	1867410.3	2861984527	1867410	74.94
66792	ASM1464147v1 assembly for Microbacterium sorbitolivorans CGMCC 1.15228	scaffold	GCA_014641475	1867410.4	8113148151	1867410	73.63

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
24810	Microbacterium sorbitolivorans strain SZDIS-1-1 16S ribosomal RNA gene, partial sequence	KX250270	1445		1867410

GC content

@ref	GC-content (mol%)	Method
24810	67.6	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM332728v1 assembly for Microbacterium sorbitolivorans CGMCC 1.15228
NCBI: GCA_003327285

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	gram_stain	BacteriaNetⓘ	positive	78.91	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	93.12	no
125439	motility	BacteriaNetⓘ	yes	46.42	no
125439	spore_formation	BacteriaNetⓘ	no	98.50	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Microbacterium sorbitolivorans CGMCC 1.15228
NCBI: GCA_003327285.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	87.94	yes
125438	anaerobic	anaerobicⓘ	no	95.50	no
125438	aerobic	aerobicⓘ	yes	75.90	yes
125438	spore-forming	spore-formingⓘ	no	74.25	no
125438	thermophilic	thermophileⓘ	no	95.00	yes
125438	flagellated	motile2+ⓘ	no	89.50	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Microbacterium suaedae sp. nov., isolated from Suaeda aralocaspica.	Zhu ZN, Li YR, Li YQ, Xiao M, Han MX, Wadaan MAM, Hozzein WN, An DD, Li WJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.003162	2018
Phylogeny	Microbacterium sorbitolivorans sp. nov., a novel member of Microbacteriaceae isolated from fermentation bed in pigpen.	Meng YC, Liu HC, Yang LL, Kang YQ, Zhou YG, Cai M	Int J Syst Evol Microbiol	10.1099/ijsem.0.001556	2016

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#24810	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 103422
#25049	Y. C. L. Meng, H. C.,Yang, L. L.,Kang, Y. Q.,Zhou, Y. G.,Cai, M.: Microbacterium sorbitolivorans sp. nov., a novel member of Microbacteriaceae isolated from fermentation bed in pigpen. IJSEM 66: 5556 - 5561 2016 ( DOI 10.1099/ijsem.0.001556 , PubMed 27902249 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Content

About us

Microbacterium sorbitolivorans (DSM 103422, CGMCC 1.15228, SZDIS-1-1)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Antibiotic resistance

Metabolite production

Metabolite tests

Enzymes

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_003327285

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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