Name: Rubripirellula obstinata LF1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 132994

Type strain:

Species: Rubripirellula obstinata

Strain Designation: LF1

Culture col. no.: DSM 26289, CECT 8602, LMG 27779

Strain history: <- O. M. Lage, Faculty Sci., Univ. Porto, Portugal <- O. M. Lage and J. Bondoso

NCBI tax ID(s): 406547 (species)

SI-ID 407448

DSM 26289

Section

Rubripirellula obstinata LF1 is a Gram-negative bacterium that was isolated from epithytic community of a marine macroalga .

Gram-negative
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Planctomycetota*
	Class	*Planctomycetia*
	Order	*Pirellulales*
	Family	*Pirellulaceae*
	Genus	*Rubripirellula*
	Species	**Rubripirellula obstinata**
	Full Scientific Name (LPSN)	Rubripirellula obstinata Bondoso et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.99

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.994

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24782]	Sample type/isolated from	epithytic community of a marine macroalga (Laminaria sp.)
[Ref.: #24782]	Host species	Laminaria
[Ref.: #24782]	Geographic location (country and/or sea, region)	Northern coast at Porto
[Ref.: #24782]	Country	Portugal
[Ref.: #24782]	Country ISO 3 Code	PRT
[Ref.: #24782]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Host	#Algae	#Brown Algae
#Host	#Other	#Epibiont

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ986201 (>99% sequence identity) for Rubripirellula obstinata subclade from Microbeatlas

Aquatic Samples	707
Soil Samples	42
Animal Samples	14
Plant Samples	10
Total Samples	773

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #24782]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24782]	Rubripirellula obstinata strain LF1 16S ribosomal RNA gene, partial sequence	DQ986201	1452	ENA	406547 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Rubripirellula obstinata LF1	GCA_008374075	contig	GenBank	406547 tax ID	*
[Ref.: #66792]	Rubripirellula obstinata CECT 8602	GCA_001642955	contig	GenBank	406547 tax ID	*
[Ref.: #66792]	Rubripirellula obstinata strain CECT 8602	406547.7	wgs	PATRIC	406547 tax ID	*
[Ref.: #66792]	Rubripirellula obstinata LF1	2731957971	draft	JGI IMG/M	406547 tax ID	*

[Ref.: #24782]

GC-content

56.1 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Rubripirellula obstinata strain CECT 8602 PATRIC: 406547.8
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Rubripirellula obstinata strain CECT 8602 PATRIC: 406547.7
[Ref.: #69480]	gram-positive	no	96.734	no
[Ref.: #69480]	anaerobic	no	95.239	no
[Ref.: #69480]	halophile	yes	51.873	no
[Ref.: #69480]	spore-forming	no	92.109	no
[Ref.: #69480]	glucose-util	yes	88.994	no
[Ref.: #69480]	aerobic	yes	80.598	no
[Ref.: #69480]	flagellated	no	81.934	no
[Ref.: #69480]	thermophile	no	98.049	no
[Ref.: #69480]	motile	yes	82.725	no
[Ref.: #69480]	glucose-ferment	no	84.123	no

Availability in culture collections External links

[Ref.: #24782]

Culture collection no.

DSM 26289, CECT 8602, LMG 27779

[Ref.: #91270]

SI-ID 407448

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Roseimaritima ulvae gen. nov., sp. nov. and Rubripirellula obstinata gen. nov., sp. nov. two novel planctomycetes isolated from the epiphytic community of macroalgae.	Bondoso J, Albuquerque L, Nobre MF, Lobo-da-Cunha A, da Costa MS, Lage OM	Syst Appl Microbiol	10.1016/j.syapm.2014.10.004	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24782

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26289

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#91270

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID407448.1 )

* These data were automatically processed and therefore are not curated

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Rubripirellula obstinata strain CECT 8602

Rubripirellula obstinata strain CECT 8602

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