Name: Larsenimonas suaedae ST307
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 132991

Type strain:

Species: Larsenimonas suaedae

Strain Designation: ST307

Culture col. no.: DSM 22428, CGMCC 1.8902

Strain history: <- Z. Xia, Shandong Univ., Jinan, China; St307 <- Z. Xia and C. Cui

NCBI tax ID(s): 1851019 (species)

SI-ID 396701

DSM 22428

Special Collections

Section

Larsenimonas suaedae ST307 is an obligate aerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from halophyte Suaeda salsa L. in seaside saline soil.

colony-forming
Gram-negative
motile
rod-shaped
obligate aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Oceanospirillales*
	Family	*Halomonadaceae*
	Genus	*Larsenimonas*
	Species	**Larsenimonas suaedae**
	Full Scientific Name (LPSN)	Larsenimonas suaedae Xia et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #43589]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %100

[Ref.: #43589]	Cell length	0.8-1.5 µm

[Ref.: #43589]	Cell width	0.4-0.6 µm

[Ref.: #43589]	Cell shape	rod-shaped

[Ref.: #43589]	Motility	yes

[Ref.: #43589]	Colony color	Orange-yellow
[Ref.: #43589]	Colony shape	circular
[Ref.: #43589]	Cultivation medium used	MH medium

Information on culture and growth conditions Culture and growth conditions

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Culture medium

MH medium

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Culture medium growth

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Culture medium

CHROMOHALOBACTER MEDIUM (DSMZ Medium 1395)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

		Temperature
[Ref.: #24779]	growth	37 °C
[Ref.: #43589]	growth	5-45 °C
[Ref.: #43589]	optimum	35 °C

	pH	Kind of pH		pH
[Ref.: #43589]			optimum	7-8
[Ref.: #43589]			growth	5-9

Information on physiology and metabolism Physiology and metabolism

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Oxygen tolerance

obligate aerobe

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Ability of spore formation

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Halophily / tolerance level

moderately halophilic

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43589]		NaCl		growth	0.6-20	%(w/v)
[Ref.: #43589]		NaCl		optimum	5-6	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43589]	4-nitrophenyl beta-D-galactopyranoside hydrolysate	+	assimilation
[Ref.: #43589]	alpha-D-glucose ChEBI	+	carbon source
[Ref.: #43589]	alpha-D-glucose ChEBI	+	energy source
[Ref.: #43589]	ammonium ChEBI	+	nitrogen source
[Ref.: #43589]	casein	-	hydrolysis
[Ref.: #43589]	citrate ChEBI	+	carbon source
[Ref.: #43589]	D-arabinose ChEBI	-	builds acid from
[Ref.: #43589]	D-fructose ChEBI	+	builds acid from
[Ref.: #43589]	D-fructose ChEBI	+	carbon source
[Ref.: #43589]	D-fructose ChEBI	+	energy source
[Ref.: #43589]	D-galactose ChEBI	+	builds acid from
[Ref.: #43589]	D-galactose ChEBI	+	carbon source
[Ref.: #43589]	D-galactose ChEBI	+	energy source
[Ref.: #43589]	D-glucose ChEBI	+	builds acid from
[Ref.: #43589]	D-glucose ChEBI	+	fermentation
[Ref.: #43589]	D-glucose ChEBI	+	oxidation
[Ref.: #43589]	D-mannitol ChEBI	-	builds acid from
[Ref.: #43589]	D-mannose ChEBI	+	builds acid from
[Ref.: #43589]	D-mannose ChEBI	+	carbon source
[Ref.: #43589]	D-mannose ChEBI	+	energy source
[Ref.: #43589]	D-sorbitol ChEBI	-	builds acid from
[Ref.: #43589]	D-sorbitol ChEBI	-	carbon source
[Ref.: #43589]	D-sorbitol ChEBI	-	energy source
[Ref.: #43589]	D-xylose ChEBI	-	carbon source
[Ref.: #43589]	D-xylose ChEBI	-	energy source
[Ref.: #43589]	dna ChEBI	-	hydrolysis
[Ref.: #43589]	erythritol ChEBI	-	builds acid from
[Ref.: #43589]	formate ChEBI	-	carbon source
[Ref.: #43589]	formate ChEBI	-	energy source
[Ref.: #43589]	fumarate ChEBI	-	respiration
[Ref.: #43589]	gelatin ChEBI	-	hydrolysis
[Ref.: #43589]	glucose ChEBI	+	fermentation
[Ref.: #43589]	glycerol ChEBI	+	carbon source
[Ref.: #43589]	glycerol ChEBI	+	energy source
[Ref.: #43589]	glycine ChEBI	+	carbon source
[Ref.: #43589]	glycine ChEBI	+	energy source
[Ref.: #43589]	glycine ChEBI	+	nitrogen source
[Ref.: #43589]	L-alanine ChEBI	+	carbon source
[Ref.: #43589]	L-alanine ChEBI	+	energy source
[Ref.: #43589]	L-alanine ChEBI	+	nitrogen source
[Ref.: #43589]	L-cysteine ChEBI	-	carbon source
[Ref.: #43589]	L-cysteine ChEBI	-	energy source
[Ref.: #43589]	L-cysteine ChEBI	-	nitrogen source
[Ref.: #43589]	L-rhamnose ChEBI	-	builds acid from
[Ref.: #43589]	L-rhamnose ChEBI	-	carbon source
[Ref.: #43589]	L-rhamnose ChEBI	-	energy source
[Ref.: #43589]	L-threonine ChEBI	-	carbon source
[Ref.: #43589]	L-threonine ChEBI	-	energy source
[Ref.: #43589]	L-threonine ChEBI	-	nitrogen source
[Ref.: #43589]	L-tryptophan ChEBI	-	carbon source
[Ref.: #43589]	L-tryptophan ChEBI	-	energy source
[Ref.: #43589]	L-tryptophan ChEBI	-	nitrogen source
[Ref.: #43589]	L-tyrosine ChEBI	+	carbon source
[Ref.: #43589]	L-tyrosine ChEBI	+	energy source
[Ref.: #43589]	L-tyrosine ChEBI	+	nitrogen source
[Ref.: #43589]	L-valine ChEBI	+	carbon source
[Ref.: #43589]	L-valine ChEBI	+	energy source
[Ref.: #43589]	L-valine ChEBI	+	nitrogen source
[Ref.: #43589]	lactose ChEBI	-	carbon source
[Ref.: #43589]	lactose ChEBI	-	energy source
[Ref.: #43589]	lactose ChEBI	+	builds acid from
[Ref.: #43589]	maltose ChEBI	+	builds acid from
[Ref.: #43589]	maltose ChEBI	+	carbon source
[Ref.: #43589]	maltose ChEBI	+	energy source
[Ref.: #43589]	methanol ChEBI	-	carbon source
[Ref.: #43589]	methanol ChEBI	-	energy source
[Ref.: #43589]	myo-inositol ChEBI	-	builds acid from
[Ref.: #43589]	myo-inositol ChEBI	-	carbon source
[Ref.: #43589]	myo-inositol ChEBI	-	energy source
[Ref.: #43589]	nitrate ChEBI	-	reduction
[Ref.: #43589]	nitrate ChEBI	-	respiration
[Ref.: #43589]	nitrite ChEBI	-	respiration
[Ref.: #43589]	raffinose ChEBI	-	builds acid from
[Ref.: #43589]	raffinose ChEBI	-	carbon source
[Ref.: #43589]	raffinose ChEBI	-	energy source
[Ref.: #43589]	sorbose ChEBI	-	builds acid from
[Ref.: #43589]	starch ChEBI	-	carbon source
[Ref.: #43589]	starch ChEBI	-	energy source
[Ref.: #43589]	starch ChEBI	-	hydrolysis
[Ref.: #43589]	sucrose ChEBI	+	builds acid from
[Ref.: #43589]	sucrose ChEBI	+	carbon source
[Ref.: #43589]	sucrose ChEBI	+	energy source
[Ref.: #43589]	trehalose ChEBI	+	builds acid from
[Ref.: #43589]	trehalose ChEBI	+	carbon source
[Ref.: #43589]	trehalose ChEBI	+	energy source
[Ref.: #43589]	tween 20 ChEBI	+	hydrolysis
[Ref.: #43589]	tween 80 ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #43589]	ampicillin ChEBI	yes	20	µg/mL
[Ref.: #43589]	carbenicillin ChEBI	yes	100	µg/mL
[Ref.: #43589]	chloramphenicol ChEBI				yes	30	µg/mL
[Ref.: #43589]	erythromycin ChEBI				yes	15	µg/mL
[Ref.: #43589]	kanamycin ChEBI				yes	30	µg/mL
[Ref.: #43589]	nalidixic acid ChEBI				yes	30	µg/mL
[Ref.: #43589]	penicillin g ChEBI	yes	20	Unit
[Ref.: #43589]	rifampicin ChEBI	yes	30	µg/mL
[Ref.: #43589]	streptomycin ChEBI				yes	10	µg/mL
[Ref.: #43589]	tobramycin ChEBI				yes	10	µg/mL

	Metabolite	Production
[Ref.: #43589]	acetoin ChEBI	no
[Ref.: #43589]	hydrogen sulfide ChEBI	no
[Ref.: #43589]	indole ChEBI	no

	Metabolite	Voges-Proskauer-test	Methylred-test	Citrate test
[Ref.: #43589]	acetoin ChEBI	-
[Ref.: #43589]	citrate ChEBI			+
[Ref.: #43589]	glucose ChEBI		+

	Enzyme	Enzyme activity	EC number
[Ref.: #43589]	catalase	+	1.11.1.6
[Ref.: #43589]	cytochrome oxidase	-	1.9.3.1
[Ref.: #43589]	lysine decarboxylase	+	4.1.1.18
[Ref.: #43589]	ornithine decarboxylase	+	4.1.1.17
[Ref.: #43589]	phenylalanine deaminase	-	4.3.1.5
[Ref.: #43589]	urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24779]	Sample type/isolated from	halophyte Suaeda salsa L. in seaside saline soil
[Ref.: #24779]	Host species	Suaeda salsa
[Ref.: #24779]	Geographic location (country and/or sea, region)	Dongying (37.4° N, 118.9° E)
[Ref.: #24779]	Country	China
[Ref.: #24779]	Country ISO 3 Code	CHN
[Ref.: #24779]	Continent	Asia
[Ref.: #24779]	Geographic location	37.4000°/118.9000°

[Ref.: #43589]	Sample type/isolated from	the halophyte Suaeda salsa in seaside saline soil
[Ref.: #43589]	Geographic location (country and/or sea, region)	Dongying
[Ref.: #43589]	Country	China
[Ref.: #43589]	Country ISO 3 Code	CHN
[Ref.: #43589]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Condition	#Saline	-
#Environmental	#Aquatic	#Marine
#Environmental	#Terrestrial	#Soil
#Host	#Algae	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FJ463811 (>99% sequence identity) for Larsenimonas from Microbeatlas

Aquatic Samples	286
Soil Samples	36
Animal Samples	67
Plant Samples	9
Total Samples	398

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #24779]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24779]	Larsenimonas suaedae strain ST307 16S ribosomal RNA gene, partial sequence	FJ463811	1474	GenBank ENA	1851019 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Larsenimonas suaedae DSM 22428	GCA_023712105	scaffold	GenBank ENA	1851019 tax ID	*

[Ref.: #24779]

GC-content

60.5 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Larsenimonas suaedae DSM 22428 NCBI: GCA_023712105.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	100	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	96.558	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	82.505	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	88.366	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	97.264	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	76.526	no

Availability in culture collections External links

[Ref.: #24779]

Culture collection no.

DSM 22428, CGMCC 1.8902

[Ref.: #91267]

SI-ID 396701

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Larsenimonas suaedae sp. nov., a moderately halophilic, endophytic bacterium isolated from the halophyte Suaeda salsa.	Xia ZJ, Wu HZ, Cui CX, Chen Q, Zhao GY, Wang HX, Dai MX	Int J Syst Evol Microbiol	10.1099/ijsem.0.001126	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24779

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22428

#43589

Zhi-Jie Xia, Hong-Zhen Wu, Chun-Xiao Cui, Qi Chen, Guo-Yan Zhao, Hai-Xia Wang, Mei-Xue Dai: Larsenimonas suaedae sp. nov., a moderately halophilic, endophytic bacterium isolated from the euhalophyte Suaeda salsa. IJSEM 66: 2952 - 2958 2016 ( DOI 10.1099/ijsem.0.001126 , PubMed 27129697 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#91267

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID396701.1 )

* These data were automatically processed and therefore are not curated

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Larsenimonas suaedae DSM 22428

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