Name: Paraburkholderia metalliresistens D414
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 132990

Type strain:

Species: Paraburkholderia metalliresistens

Strain Designation: D414

Culture col. no.: DSM 26823, CICC 10561

Strain history: <- J. Guo, Centre for Res. in Ecotoxicology and Environmental Remediation, Agro-Environmental Protection Inst., Ministry of Agriculture, Tianjin, China; D414

NCBI tax ID(s): 1398664 (species)

SI-ID 403410

DSM 26823

Special Collections

DSMZ

Section

Paraburkholderia metalliresistens D414 is a bacterium that was isolated from arable layer of a heavy metal-polluted paddy soil, mine.

16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Burkholderiaceae*
	Genus	*Paraburkholderia*
	Species	**Paraburkholderia metalliresistens**
	Full Scientific Name (LPSN)	Paraburkholderia metalliresistens (Guo et al. 2015) Dobritsa and Samadpour 2016

Synonym

Burkholderia metalliresistens

Information on culture and growth conditions Culture and growth conditions

[Ref.: #24778]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #24778]

Culture medium growth

[Ref.: #24778]

Culture medium link

Medium recipe at MediaDive

[Ref.: #24778]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #24778]			growth	30 °C

Information on physiology and metabolism Physiology and metabolism

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	-	reduction	* from API 20NE
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	+	3.2.1.21	* from API 20NE
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #24778]	24594	-	-	-	-	-	+	-	+	+	+	+	+	+	-	+	+	+/-	+	+	+	+
[Ref.: #24778]	24290	-	-	-	-	-	+	-	+	+	+	+	+	+	-	+	+	+/-	+	+	+	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24778]	Sample type/isolated from	arable layer (0–20 cm) of a heavy metal-polluted paddy soil, mine
[Ref.: #24778]	Geographic location (country and/or sea, region)	Guangdong Province, Dabao Mountain Mine
[Ref.: #24778]	Country	China
[Ref.: #24778]	Country ISO 3 Code	CHN
[Ref.: #24778]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	#Field
#Engineered	#Contamination	#Heavy metal
#Engineered	#Other	#Mine
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KF601211 (>99% sequence identity) for Paraburkholderia from Microbeatlas

Aquatic Samples	45
Soil Samples	513
Animal Samples	195
Plant Samples	142
Total Samples	895

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #24778]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24778]	Paraburkholderia metalliresistens strain D414 16S ribosomal RNA gene, partial sequence	KF601211	1437	GenBank ENA	1398664 tax ID

[Ref.: #24778]

GC-content

62.3 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #24778]

Culture collection no.

DSM 26823, CICC 10561

[Ref.: #91266]

SI-ID 403410

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Burkholderia metalliresistens sp. nov., a multiple metal-resistant and phosphate-solubilising species isolated from heavy metal-polluted soil in Southeast China.	Guo JK, Ding YZ, Feng RW, Wang RG, Xu YM, Chen C, Wei XL, Chen WM	Antonie Van Leeuwenhoek	10.1007/s10482-015-0453-z	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24778

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26823

#68369

Automatically annotated from API 20NE .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#91266

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID403410.1 )

* These data were automatically processed and therefore are not curated

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