Prevotella colorans (DSM 100333, CCOS 902, CCUG 67421)

Name: Prevotella colorans (DSM 100333, CCOS 902, CCUG 67421)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 132987

Type strain

Strain Designation A1336

Culture col. no. DSM 100333 CCOS 902 CCUG 67421 KCTC 15694 A1336

NCBI tax ID(s) 1703337

Special Collections DSMZ CCUG KCTC Literature strains

History <- M. Buhl, Univ. Tübingen; A1336 <- DSM <- M Buhl, Univ. Tubingen, A1336

Links

Prevotella colorans A1336 is an obligate anaerobe, mesophilic, Gram-negative prokaryote that forms circular colonies and was isolated from human wound swab; mixed infection of a 77 year old female patient.

Gram-negative pleomorphic-shaped colony-forming obligate anaerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 397050

KCTC 15694,DSM 100333,CCUG 67421

@ref 20215

Last LPSN update 2025-12-16 10:01:39

Domain Pseudomonadati

Phylum Bacteroidota

Class Bacteroidia

Order Bacteroidales

Family Prevotellaceae

Genus Prevotella

Species Prevotella colorans

Full scientific name Prevotella colorans Buhl et al. 2016

Synonyms (1)

Hallella colorans

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
43096	negative	0.9-1.3 µm	0.4-0.6 mm	pleomorphic-shaped
67771				rod-shaped
67771				pleomorphic-shaped
67771	negative
125438					90.5
125438	negative				94.734
125439	negative				99.8

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
43096	1 mm	greyish-brown	circular	2-5 days	BHI agar
63417				2 days

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
43096	BHI agar		supplemented with sheep blood
43096	chocolate agar
43096	Schädler agar
43096	liver broth
43096	CMC broth
24775	FASTIDIOUS ANAEROBE BROTH (DSMZ Medium 1203a)	Medium recipe at MediaDive	Name: FASTIDIOUS ANAEROBE BROTH (DSMZ Medium 1203a) Composition: Fastidious Anaerobe Basal Broth 35.4 g/l Distilled water
24775	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)	Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
24775	positive	growth	37	mesophilic
43096	positive	optimum	35-37	mesophilic
43096	negative	growth	45
43096	positive	growth	30-37	mesophilic
63417	positive	growth	37	mesophilic
67771	positive	growth	37	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
43096	positive	optimum	7-9	alkaliphile
43096	positive	growth	6
43096		growth	5

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
43096	obligate anaerobe
63417	anaerobe
67771	anaerobe
125438	anaerobe	92.451
125439	obligate anaerobe	99

Spore formation

@ref	Spore formation	Confidence
43096
67771
125438		90.993
125439		99.9

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43096	22599 ChEBI	arabinose	-	fermentation
68380	29016 ChEBI	arginine	-	hydrolysis	from API rID32A
43096	17057 ChEBI	cellobiose	+	fermentation
68380	16024 ChEBI	D-mannose	-	fermentation	from API rID32A
43096	17234 ChEBI	glucose	+	fermentation
68380	29985 ChEBI	L-glutamate	-	degradation	from API rID32A
43096	17716 ChEBI	lactose	+	fermentation
43096	17306 ChEBI	maltose	+	fermentation
43096	29864 ChEBI	mannitol	-	fermentation
43096	37684 ChEBI	mannose	+	fermentation
43096	6731 ChEBI	melezitose	-	fermentation
68380	17632 ChEBI	nitrate	-	reduction	from API rID32A
43096	16634 ChEBI	raffinose	+	fermentation
68380	16634 ChEBI	raffinose	-	fermentation	from API rID32A
43096	17814 ChEBI	salicin	-	fermentation
43096	30911 ChEBI	sorbitol	-	fermentation
43096	17992 ChEBI	sucrose	+	fermentation
43096	27082 ChEBI	trehalose	-	fermentation
68380	27897 ChEBI	tryptophan	-	energy source	from API rID32A
68380	16199 ChEBI	urea	-	hydrolysis	from API rID32A
43096	18222 ChEBI	xylose	-	fermentation

Antibiotic resistance

@ref	ChEBI	Metabolite	Is resistant	Resistance conc.
43096	37943	colistin		10 µg (disc)
43096	28001	vancomycin		5 µg (disc)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
43096	35581 ChEBI	indole
68380	35581 ChEBI	indole		from API rID32A

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68380	35581 ChEBI	indole	-	from API rID32A

Enzymes

@ref	Value	Activity	Ec
43096	6-phospho-beta-galactosidase	-	3.2.1.85
43096	alanine arylamidase	+	3.4.11.2
68380	alanine arylamidase	+	3.4.11.2	from API rID32A
43096	alkaline phosphatase	+	3.1.3.1
68380	alkaline phosphatase	+	3.1.3.1	from API rID32A
43096	alpha-arabinosidase	-	3.2.1.55
68380	alpha-arabinosidase	-	3.2.1.55	from API rID32A
68380	alpha-fucosidase	-	3.2.1.51	from API rID32A
68380	alpha-galactosidase	-	3.2.1.22	from API rID32A
43096	alpha-glucosidase	+	3.2.1.20
68380	alpha-glucosidase	+	3.2.1.20	from API rID32A
43096	arginine arylamidase	+
68380	arginine dihydrolase	-	3.5.3.6	from API rID32A
43096	beta-galactosidase	+	3.2.1.23
68380	beta-galactosidase	+	3.2.1.23	from API rID32A
68380	beta-Galactosidase 6-phosphate	-		from API rID32A
43096	beta-glucosidase	-	3.2.1.21
68380	beta-glucosidase	-	3.2.1.21	from API rID32A
68380	beta-glucuronidase	-	3.2.1.31	from API rID32A
43096	catalase	-	1.11.1.6
68380	glutamate decarboxylase	-	4.1.1.15	from API rID32A
43096	glutamyl-glutamate arylamidase	+
68380	glutamyl-glutamate arylamidase	+		from API rID32A
68380	glycin arylamidase	-		from API rID32A
68380	histidine arylamidase	-		from API rID32A
68380	leucine arylamidase	-	3.4.11.1	from API rID32A
43096	leucyl glycin arylamidase	+	3.4.11.1
68380	leucyl glycin arylamidase	+	3.4.11.1	from API rID32A
43096	N-acetyl-beta-glucosaminidase	+	3.2.1.52
68380	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API rID32A
68380	phenylalanine arylamidase	-		from API rID32A
68380	proline-arylamidase	-	3.4.11.5	from API rID32A
68380	pyrrolidonyl arylamidase	-	3.4.19.3	from API rID32A
68380	serine arylamidase	+		from API rID32A
68380	tryptophan deaminase	-	4.1.99.1	from API rID32A
68380	tyrosine arylamidase	-		from API rID32A
68380	urease	-	3.5.1.5	from API rID32A

Fatty acid profile

Metadata FA analysis

@ref

43096

Fatty acid	Percentage
C17:0 iso 3OH	15.5
C15:0 anteiso	15.2
C15:0 iso	12.4

API rID32A

@ref	URE	ADH (Arg)	alpha GAL	beta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha GLU	beta GLU	alpha ARA	beta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	MNE	RAF	GDC	alpha FUC	Reduction of nitrateNIT	IND	PAL	L-arginine arylamidaseArgA	ProA	LGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	PyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
24775	-	-	-	+	-	+	-	-	-	+	-	-	-	-	-	-	+	+/-	-	+	-	-	-	-	+	-	-	+	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Infection	#Disease	-
#Infection	#Patient	#Swab
#Host	#Human	#Female
#Host Body-Site	#Other	#Wound

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent	Enrichment culture	Enrichment culture composition	Enrichment culture temperature
24775	human wound swab; mixed infection of a 77 year old female patient			Germany	DEU	Europe
43096	wound of a 77 year old female patient						brain-heart infusion (BHI) agar (Oxoid)	supplemented with 5 % defibrinated sheep blood and IsoVitalex enrichment (BD)	37
63417	Human wound	2012-02-09	Tübingen Univ Hospital	Germany	DEU	Europe
67771	From human wound swab, mixed infection of a 77 year old female patient			Germany	DEU	Europe

Interaction and safety

Risk assessment

@ref	Pathogenicity human	Biosafety level	Biosafety level comment
24775	yes, in single cases	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67771	ASM309681v1 assembly for Hallella colorans DSM 100333	scaffold	GCA_003096815	1703337.3	2756170230	1703337	66.65

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
24775	Hallella colorans strain A1336 16S ribosomal RNA gene, partial sequence	KT886066	1491		1703337

GC content

@ref	GC-content (mol%)	Method
24775	43.2	high performance liquid chromatography (HPLC)
67771	43.2

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Hallella colorans DSM 100333
NCBI: GCA_003096815

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.90	no
125439	motility	BacteriaNetⓘ	no	75.50	no
125439	gram_stain	BacteriaNetⓘ	negative	99.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate anaerobe	99.00	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Prevotella colorans strain DSM 100333
PATRIC: 1703337.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	94.73	no
125438	anaerobic	anaerobicⓘ	yes	92.45	yes
125438	spore-forming	spore-formingⓘ	no	90.99	yes
125438	aerobic	aerobicⓘ	no	96.83	yes
125438	thermophilic	thermophileⓘ	no	91.92	yes
125438	flagellated	motile2+ⓘ	no	90.50	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Prevotella colorans sp. nov., isolated from a human wound.	Buhl M, Willmann M, Liese J, Autenrieth IB, Marschal M	Int J Syst Evol Microbiol	10.1099/ijsem.0.001134	2016

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#24775	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 100333
#43096	Michael Buhl, Matthias Willmann, Jan Liese, Ingo B. Autenrieth, Matthias Marschal: Prevotella colorans sp. nov., isolated from a human wound. IJSEM 66: 3005 - 3009 2016 ( DOI 10.1099/ijsem.0.001134 , PubMed 27150727 )
#63417	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 67421
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#68380	Automatically annotated from API rID32A .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Prevotella colorans (DSM 100333, CCOS 902, CCUG 67421)

Name and taxonomic classification