Name: Wenyingzhuangia aestuarii MN1-138
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 132979

Type strain:

Species: Wenyingzhuangia aestuarii

Strain Designation: MN1-138

Culture col. no.: DSM 105044, KCTC 42780, NBRC 111505

Strain history: <- H. Kasai; School of Marine Biosciences, Kitasato University, Ofunato, Japan; MN1-138 <- H. Kasai, Marine Biosciences Kamaishi Research Lab, Kitasato University

NCBI tax ID(s): 1647582 (species)

SI-ID 398190

DSM 105044

Section

Wenyingzhuangia aestuarii MN1-138 is a mesophilic, Gram-negative bacterium that was isolated from water in the tidal zone.

Gram-negative
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Wenyingzhuangia*
	Species	**Wenyingzhuangia aestuarii**
	Full Scientific Name (LPSN)	Wenyingzhuangia aestuarii Yoon and Kasai 2016

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.996

Multimedia content

[Ref.: #24767]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #24767]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #24767]

Culture medium growth

[Ref.: #24767]

Culture medium link

Medium recipe at MediaDive

[Ref.: #24767]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #24767]			growth	28 °C

[Ref.: #24767]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.998

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24767]	Sample type/isolated from	water in the tidal zone
[Ref.: #24767]	Geographic location (country and/or sea, region)	(39° 14' 49.09" N, 141° 53' 27.87"E)
[Ref.: #24767]	Country	Japan
[Ref.: #24767]	Country ISO 3 Code	JPN
[Ref.: #24767]	Continent	Asia
[Ref.: #24767]	Geographic location	39.2470°/141.8910°
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Tidal flat

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LC052784 (>99% sequence identity) for Wenyingzhuangia aestuarii subclade from Microbeatlas

Aquatic Samples	1924
Soil Samples	46
Animal Samples	24
Plant Samples	10
Total Samples	2004

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #24767]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24767]	Wenyingzhuangia aestuarii gene for 16S ribosomal RNA, partial sequence	LC052784	1444	ENA	1647582 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Wenyingzhuangia aestuarii DSM 105044	GCA_011927765	scaffold	GenBank	1647582 tax ID	*
[Ref.: #66792]	Wenyingzhuangia aestuarii strain DSM 105044	1647582.3	wgs	PATRIC	1647582 tax ID	*
[Ref.: #66792]	Wenyingzhuangia aestuarii DSM 105044	2830030840	draft	JGI IMG/M	1647582 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Wenyingzhuangia aestuarii DSM 105044 NCBI: GCA_011927765.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Wenyingzhuangia aestuarii DSM 105044 NCBI: GCA_011927765.1
[Ref.: #69480]	motile	no	91.434	no
[Ref.: #69480]	flagellated	no	92.504	no
[Ref.: #69480]	gram-positive	no	97.92	no
[Ref.: #69480]	anaerobic	no	99.237	no
[Ref.: #69480]	aerobic	yes	81.84	no
[Ref.: #69480]	halophile	no	69.925	no
[Ref.: #69480]	spore-forming	no	96.495	no
[Ref.: #69480]	glucose-util	yes	82.579	no
[Ref.: #69480]	thermophile	no	99.298	no
[Ref.: #69480]	glucose-ferment	no	85.743	no

Availability in culture collections External links

[Ref.: #24767]

Culture collection no.

DSM 105044, KCTC 42780, NBRC 111505

[Ref.: #91255]

SI-ID 398190

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Wenyingzhuangia aestuarii sp. nov., A Marine Bacterium of the Family Flavobacteriaceae Isolated from an Estuary.	Yoon J, Kasai H	Curr Microbiol	10.1007/s00284-015-0965-9	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24767

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 105044

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#91255

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID398190.1 )

* These data were automatically processed and therefore are not curated

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Wenyingzhuangia aestuarii DSM 105044

Wenyingzhuangia aestuarii DSM 105044

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