Name: Shewanella algicola ST-6
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 132976

Type strain:

Species: Shewanella algicola

Strain Designation: ST-6

Culture col. no.: DSM 23803, JCM 31091, KCTC 23253

Strain history: J.-Y. Kim; Coll. of Ocean Sci., Jeju Natl. Univ., South Korea; ST-6.

NCBI tax ID(s): 640633 (species)

SI-ID 404607

DSM 23803

Section

Shewanella algicola ST-6 is an aerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from marine brown alga .

colony-forming
Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Shewanellaceae*
	Genus	*Shewanella*
	Species	**Shewanella algicola**
	Full Scientific Name (LPSN)	Shewanella algicola Kim et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #43962]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.935

[Ref.: #43962]	Cell length	1.6-3.8 µm

[Ref.: #43962]	Cell width	0.4-0.8 µm

[Ref.: #43962]	Cell shape	rod-shaped

[Ref.: #43962]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %97.847

[Ref.: #43962]	Flagellum arrangement	gliding

[Ref.: #43962]	Colony size	1.0-2.0 mm
[Ref.: #43962]	Colony color	pale-pink
[Ref.: #43962]	Colony shape	circular
[Ref.: #43962]	Incubation period	2 days
[Ref.: #43962]	Cultivation medium used	Marine agar 2216

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43962]

Culture medium

Marine agar (MA)

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Culture medium growth

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Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

		Temperature
[Ref.: #24764]	growth	20 °C
[Ref.: #43962]	growth	4-30 °C
[Ref.: #43962]	optimum	20 °C
[Ref.: #67770]	growth	20 °C

[Ref.: #24764]	Temperature range	psychrophilic
[Ref.: #43962]	Temperature range	psychrophilic
[Ref.: #67770]	Temperature range	psychrophilic

	pH	Kind of pH		pH
[Ref.: #43962]			optimum	7.5
[Ref.: #43962]			growth	6.0-10.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43962]

Oxygen tolerance

aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.974

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43962]		NaCl		growth	1-6	%(w/v)

[Ref.: #43962]

Observation

quinone MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43962]	adipate ChEBI	-	carbon source
[Ref.: #43962]	arabinose ChEBI	-	carbon source
[Ref.: #43962]	carboxymethylcellulose ChEBI	-	hydrolysis
[Ref.: #43962]	casein	-	hydrolysis
[Ref.: #43962]	cellobiose ChEBI	+	oxidation
[Ref.: #43962]	citrate ChEBI	-	carbon source
[Ref.: #43962]	D-gluconate ChEBI	+	oxidation
[Ref.: #43962]	D-glucose ChEBI	+	carbon source
[Ref.: #43962]	D-mannitol ChEBI	+	oxidation
[Ref.: #43962]	D-tagatose ChEBI	+	oxidation
[Ref.: #43962]	D-xylose ChEBI	+	oxidation
[Ref.: #43962]	decanoate ChEBI	+	carbon source
[Ref.: #43962]	dna ChEBI	-	hydrolysis
[Ref.: #43962]	esculin ChEBI	+	hydrolysis
[Ref.: #43962]	gelatin ChEBI	+	hydrolysis
[Ref.: #43962]	gluconate ChEBI	-	carbon source
[Ref.: #43962]	glucose ChEBI	-	fermentation
[Ref.: #43962]	L-alanylglycine ChEBI	+	oxidation
[Ref.: #43962]	L-ornithine ChEBI	+	oxidation
[Ref.: #43962]	L-phenylalanine ChEBI	+	oxidation
[Ref.: #43962]	L-proline ChEBI	+	oxidation
[Ref.: #43962]	malate ChEBI	+	carbon source
[Ref.: #43962]	malate ChEBI	+	oxidation
[Ref.: #43962]	maltose ChEBI	+	carbon source
[Ref.: #43962]	mannitol ChEBI	+	carbon source
[Ref.: #43962]	mannose ChEBI	-	carbon source
[Ref.: #43962]	melibiose ChEBI	+	oxidation
[Ref.: #43962]	N-acetyl-D-mannosamine ChEBI	+	oxidation
[Ref.: #43962]	N-acetylglucosamine ChEBI	-	carbon source
[Ref.: #43962]	nitrate ChEBI	+	reduction
[Ref.: #43962]	phenylacetate ChEBI	-	carbon source
[Ref.: #43962]	quinate ChEBI	+	oxidation
[Ref.: #43962]	ribitol ChEBI	+	oxidation
[Ref.: #43962]	stachyose ChEBI	+	oxidation
[Ref.: #43962]	starch ChEBI	+	hydrolysis
[Ref.: #43962]	tween 20 ChEBI	-	hydrolysis
[Ref.: #43962]	tween 40 ChEBI	-	hydrolysis
[Ref.: #43962]	tween 80 ChEBI	-	hydrolysis
[Ref.: #43962]	urea ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43962]		hydrogen sulfide ChEBI	yes
[Ref.: #43962]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #43962]	acid phosphatase	+	3.1.3.2
[Ref.: #43962]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43962]	alpha-chymotrypsin	+	3.4.21.1
[Ref.: #43962]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43962]	alpha-galactosidase	+	3.2.1.22
[Ref.: #43962]	alpha-glucosidase	+	3.2.1.20
[Ref.: #43962]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43962]	arginine dihydrolase	-	3.5.3.6
[Ref.: #43962]	beta-galactosidase	-	3.2.1.23
[Ref.: #43962]	beta-glucosidase	-	3.2.1.21
[Ref.: #43962]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43962]	catalase	+	1.11.1.6
[Ref.: #43962]	cystine arylamidase	+	3.4.11.3
[Ref.: #43962]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43962]	esterase (C 4)	+
[Ref.: #43962]	esterase Lipase (C 8)	+
[Ref.: #43962]	leucine arylamidase	+	3.4.11.1
[Ref.: #43962]	lipase (C 14)	+
[Ref.: #43962]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #43962]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43962]	trypsin	+	3.4.21.4
[Ref.: #43962]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43962]

Fatty acid	Percentage
C16:1ω7c / C15:0 iso 2OH	34.3
C16:0	12.5
C15:0 iso	12.1
C13:0 iso	7.5
C17:1ω8c	6.1
C15:0	4.6
C13:0 iso 3OH	4.2
C14:0	3.1
C18:1ω7c / C18:1ω6c	2.4
C12:0 3OH	2.1
C12:0	2
C14:0 iso	1.4
C17:0	1.3
C15:1ω8c	1.2
iso-C16:1 /C14:0 3-OH	1
C15:1ω6c	0.8
C13:0	0.8
C18:1ω9c	0.7
iso-C15:1 I/H / C13:0 3-OH	0.7
C17:0 iso	0.6
C15:0 anteiso	0.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24764]	Sample type/isolated from	marine brown alga (Sargassum thunbergii)
[Ref.: #24764]	Host species	Sargassum thunbergii
[Ref.: #24764]	Geographic location (country and/or sea, region)	coast of Jeju Island
[Ref.: #24764]	Country	Republic of Korea
[Ref.: #24764]	Country ISO 3 Code	KOR
[Ref.: #24764]	Continent	Asia

[Ref.: #43962]	Sample type/isolated from	brown alga (Sargassum thunbergii) collected in Jeju, Republic of Korea
[Ref.: #43962]	Geographic location (country and/or sea, region)	Jeju
[Ref.: #43962]	Country	Republic of Korea
[Ref.: #43962]	Country ISO 3 Code	KOR
[Ref.: #43962]	Continent	Asia
[Ref.: #43962]	Enrichment culture	Marine agar 2216
[Ref.: #43962]	Enrichment culture duration	7 days
[Ref.: #43962]	Enrichment culture temperature	20 ̊C

[Ref.: #67770]	Sample type/isolated from	Brown alga (Sargassum thunbergii) in Jeju
[Ref.: #67770]	Host species	Sargassum thunbergii
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Host	#Algae	#Brown Algae

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FJ903681 (>99% sequence identity) for Shewanella from Microbeatlas

Aquatic Samples	2798
Soil Samples	71
Animal Samples	284
Plant Samples	4
Total Samples	3157

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #24764]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24764]	Shewanella algicola strain ST-6 16S ribosomal RNA gene, partial sequence	FJ903681	1459	ENA	640633 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Shewanella algicola JCM 31091	GCA_014648035	contig	GenBank	640633 tax ID	*
[Ref.: #66792]	Shewanella algicola strain JCM 31091	640633.4	wgs	PATRIC	640633 tax ID	*
[Ref.: #66792]	Shewanella algicola DSM 23803	GCA_023283725	contig	GenBank	640633 tax ID	*

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GC-content

42.4 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Shewanella algicola strain JCM 31091 PATRIC: 640633.4
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Shewanella algicola strain JCM 31091 PATRIC: 640633.4
[Ref.: #69480]	gram-positive	no	98.972	yes
[Ref.: #69480]	anaerobic	no	96.931	yes
[Ref.: #69480]	halophile	no	55.96	no
[Ref.: #69480]	spore-forming	no	96.509	no
[Ref.: #69480]	glucose-util	yes	88.061	yes
[Ref.: #69480]	thermophile	no	99.534	yes
[Ref.: #69480]	flagellated	yes	79.484	yes
[Ref.: #69480]	aerobic	yes	64.556	no
[Ref.: #69480]	motile	yes	88.543	no
[Ref.: #69480]	glucose-ferment	no	80.321	no

Availability in culture collections External links

[Ref.: #24764]

Culture collection no.

DSM 23803, JCM 31091, KCTC 23253

[Ref.: #91252]

SI-ID 404607

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Shewanella algicola sp. nov., a marine bacterium isolated from brown algae.	Kim JY, Yoo HS, Lee DH, Park SH, Kim YJ, Oh DC	Int J Syst Evol Microbiol	10.1099/ijsem.0.001014	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24764

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23803

#43962

Ji-Young Kim, Han-Su Yoo, Dong-Heon Lee, So-Hyun Park, Young-Ju Kim, Duck-Chul Oh: Shewanella algicola sp. nov., a marine bacterium isolated from brown algae. IJSEM 66: 2218 - 2224 2016 ( DOI 10.1099/ijsem.0.001014 , PubMed 26962005 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#91252

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID404607.1 )

* These data were automatically processed and therefore are not curated

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Shewanella algicola strain JCM 31091

Shewanella algicola strain JCM 31091

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