Proteus terrae subsp. cibarius (DSM 100173, JCM 30699, KACC 18404)

Name: Proteus terrae subsp. cibarius (DSM 100173, JCM 30699, KACC 18404)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 132975

Type strain

Strain Designation JS9

Culture col. no. DSM 100173 JCM 30699 KACC 18404 JS9

NCBI tax ID(s) 626774

Special Collections DSMZ JCM Literature strains

History <- D.-W. Hyun, Kyung Hee Univ., Seoul, Republic of Korea; JS9 J.-W. Bae; Kyung Hee Univ., South Korea; JS9.

Links

Proteus terrae subsp. cibarius JS9 is a facultative anaerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from Jeotgal .

Gram-negative motile rod-shaped colony-forming facultative anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 402545

JCM 30699,DSM 100173

@ref 20215

Last LPSN update 2026-02-09 11:31:50

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Enterobacterales

Family Morganellaceae

Genus Proteus

Species Proteus terrae subsp. cibarius

Full scientific name Proteus terrae subsp. cibarius (Hyun et al. 2016) Behrendt et al. 2021

Synonyms (1)

Proteus cibarius

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Flagellum arrangement	Confidence
43976	negative	0.5-2.0 µm	0.4-0.7 µm	rod-shaped	peritrichous
125439	negative					98.7
125438	negative					99.985

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
43976	0.8-1.1 mm	white	circular	2 days	Nutrient agar

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
43976	Nutrient agar (NA)
24763	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
24763	positive	growth	28
43976	positive	growth	10-37
43976	positive	optimum	30
67770	positive	growth	25

Culture pH

@ref	Ability	Type	PH	PH range
43976	positive	optimum	7
43976	positive	growth	5.0-10.0	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
43976	facultative anaerobe
125439	obligate aerobe	96.7

Spore formation

@ref	Spore formation	Confidence
125439		98.7
125438		90.231

Halophily

@ref	Salt	Growth	Tested relation	Concentration
43976	NaCl	positive	growth	0-12 %(w/v)
43976	NaCl	positive	optimum	2 %(w/v)

Observation

67770

Observationquinones: Q-8, Q-10

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43976	16808 ChEBI	2-dehydro-D-gluconate	+	builds acid from
43976	64552 ChEBI	2-hydroxybutyrate	+	energy source
43976	16763 ChEBI	2-oxobutanoate	+	energy source
43976	30916 ChEBI	2-oxoglutarate	+	energy source
43976	18240 ChEBI	4-hydroxy-L-proline	+	energy source
43976	16724 ChEBI	4-hydroxybutyrate	+	energy source
43976	30089 ChEBI	acetate	+	energy source
43976	17925 ChEBI	alpha-D-glucose	+	energy source
68368	27613 ChEBI	amygdalin	-	fermentation	from API 20E
68368	29016 ChEBI	arginine	-	hydrolysis	from API 20E
43976	73706 ChEBI	bromosuccinate	+	energy source
43976	17057 ChEBI	cellobiose	+	energy source
68368	16947 ChEBI	citrate	-	assimilation	from API 20E
43976	15570 ChEBI	D-alanine	+	energy source
43976	17108 ChEBI	D-arabinose	+	builds acid from
43976	15824 ChEBI	D-fructose	+	builds acid from
43976	15824 ChEBI	D-fructose	+	energy source
43976	12936 ChEBI	D-galactose	+	builds acid from
43976	12936 ChEBI	D-galactose	+	energy source
43976	8391 ChEBI	D-gluconate	+	energy source
43976	17634 ChEBI	D-glucose	+	builds acid from
68368	17634 ChEBI	D-glucose	+	fermentation	from API 20E
43976	14314 ChEBI	D-glucose 6-phosphate	+	energy source
68368	16899 ChEBI	D-mannitol	-	fermentation	from API 20E
43976	16024 ChEBI	D-mannose	+	energy source
43976	16988 ChEBI	D-ribose	+	builds acid from
43976	16523 ChEBI	D-serine	+	energy source
43976	65327 ChEBI	D-xylose	+	builds acid from
43976	23652 ChEBI	dextrin	+	energy source
43976	15740 ChEBI	formate	+	energy source
68368	5291 ChEBI	gelatin	+	hydrolysis	from API 20E
43976	24265 ChEBI	gluconate	+	builds acid from
43976	14336 ChEBI	glycerol 1-phosphate	+	energy source
43976	15978 ChEBI	glycerol 3-phosphate	+	builds acid from
43976	15978 ChEBI	glycerol 3-phosphate	+	energy source
43976	28087 ChEBI	glycogen	+	energy source
43976	73804 ChEBI	glycyl L-aspartic acid	+	energy source
43976	73784 ChEBI	glycyl-l-glutamate	+	energy source
43976	17596 ChEBI	inosine	+	energy source
43976	21217 ChEBI	L-alaninamide	+	energy source
43976		L-alanine 4-nitroanilide	+	energy source
43976	73786 ChEBI	L-alanylglycine	+	energy source
43976	30849 ChEBI	L-arabinose	+	energy source
68368	30849 ChEBI	L-arabinose	-	fermentation	from API 20E
43976	17196 ChEBI	L-asparagine	+	energy source
43976	29991 ChEBI	L-aspartate	+	energy source
43976	29985 ChEBI	L-glutamate	+	energy source
43976	15971 ChEBI	L-histidine	+	energy source
43976	15603 ChEBI	L-leucine	+	energy source
43976	15729 ChEBI	L-ornithine	+	energy source
43976	17295 ChEBI	L-phenylalanine	+	energy source
43976	17203 ChEBI	L-proline	+	energy source
43976	18183 ChEBI	L-pyroglutamic acid	+	energy source
68368	62345 ChEBI	L-rhamnose	-	fermentation	from API 20E
43976	17115 ChEBI	L-serine	+	energy source
43976	16857 ChEBI	L-threonine	+	energy source
43976	24996 ChEBI	lactate	+	energy source
68368	25094 ChEBI	lysine	-	degradation	from API 20E
43976	17306 ChEBI	maltose	+	builds acid from
43976	17306 ChEBI	maltose	+	energy source
43976	6731 ChEBI	melezitose	+	builds acid from
68368	28053 ChEBI	melibiose	-	fermentation	from API 20E
43976	320061 ChEBI	methyl alpha-D-glucopyranoside	+	builds acid from
43976	51850 ChEBI	methyl pyruvate	+	energy source
43976	75146 ChEBI	monomethyl succinate	+	energy source
68368	17268 ChEBI	myo-inositol	-	fermentation	from API 20E
43976	28037 ChEBI	N-acetylgalactosamine	+	energy source
43976	506227 ChEBI	N-acetylglucosamine	+	builds acid from
43976	506227 ChEBI	N-acetylglucosamine	+	energy source
68368	17632 ChEBI	nitrate	-	reduction	from API 20E
68368	18257 ChEBI	ornithine	-	degradation	from API 20E
68368	30911 ChEBI	sorbitol	-	fermentation	from API 20E
43976	143136 ChEBI	succinamate	+	energy source
43976	30031 ChEBI	succinate	+	energy source
43976	17992 ChEBI	sucrose	+	builds acid from
43976	17992 ChEBI	sucrose	+	energy source
68368	17992 ChEBI	sucrose	+	fermentation	from API 20E
43976	17748 ChEBI	thymidine	+	energy source
43976	27082 ChEBI	trehalose	+	builds acid from
68368	27897 ChEBI	tryptophan	+	energy source	from API 20E
43976	32528 ChEBI	turanose	+	builds acid from
43976	32528 ChEBI	turanose	+	energy source
68368	16199 ChEBI	urea	+	hydrolysis	from API 20E
43976	16704 ChEBI	uridine	+	energy source

Antibiotic resistance

@ref	ChEBI	Metabolite	Resistance conc.
43976	28971	ampicillin	200 µg/mL
43976	6104	kanamycin	100 µg/mL
43976	27902	tetracycline	30 µg/mL

Metabolite production

@ref	Chebi-ID	Metabolite
68368	15688 ChEBI	acetoin	from API 20E
68368	17997 ChEBI	dinitrogen	from API 20E
68368	35581 ChEBI	indole	from API 20E
68368	16301 ChEBI	nitrite	from API 20E

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Indole test
68368	15688 ChEBI	acetoin	+		from API 20E
68368	35581 ChEBI	indole		+	from API 20E

Enzymes

@ref	Value	Activity	Ec
43976	acid phosphatase	+	3.1.3.2
43976	alkaline phosphatase	+	3.1.3.1
43976	alpha-glucosidase	+	3.2.1.20
68368	arginine dihydrolase	-	3.5.3.6	from API 20E
68368	beta-galactosidase	-	3.2.1.23	from API 20E
43976	catalase	+	1.11.1.6
68368	cytochrome oxidase	-	1.9.3.1	from API 20E
68368	gelatinase	+		from API 20E
43976	leucine arylamidase	+	3.4.11.1
68368	lysine decarboxylase	-	4.1.1.18	from API 20E
43976	naphthol-AS-BI-phosphohydrolase	+
68368	ornithine decarboxylase	-	4.1.1.17	from API 20E
43976	protease	+
43976	trypsin	+	3.4.21.4
68368	tryptophan deaminase	+	4.1.99.1	from API 20E
68368	urease	+	3.5.1.5	from API 20E
43976	valine arylamidase	+

Fatty acid profile

Metadata FA analysis

@ref

43976

Fatty acid	Percentage
C16:0	28.2
C16:1ω7c / C16:1ω6c	24.3
C18:1ω7c / C18:1ω6c	19.1
C17:0 cyclo	7.7
C14:0	7.5
C14:0 3OH / C16:1 iso I	6.8
C16:1	2.1
C17:1ω8c	0.6
C19:0ω8c cyclo	0.6
C17:0	0.5
C18:0	0.5
C18:1ω9c	0.5

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
24763	-	-	-	-	-	-	+	+	+	+	+	+	-	-	-	-	+	-	-	-	-	-	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
24763	-	-	-	-	-	+	+	+	+	+	+	+	-	-	-	-	+	-	-	-	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Food production	#Seafood
#Engineered	#Food production	#Fermented

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent	Enrichment culture	Enrichment culture duration	Enrichment culture temperature
24763	Jeotgal (Korean traditional fermented seafood)	Republic of Korea	KOR	Asia
43976	Korean fermented seafood, Jeotgal				Nutrient agar	3 days	25
67770	Korean fermented seafood, Jeotgal	Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence FJ796245 (>99% sequence identity) for Proteus from Microbeatlas

Aquatic Samples	10
Soil Samples	4
Animal Samples	74
Plant Samples	1
Total Samples	89

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
24763	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM314449v1 assembly for Proteus terrae subsp. cibarius JCM 30699	contig	GCA_003144495	626774.3	2905324704	626774	63.41

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
24763	Proteus terrae subsp. cibarius strain JS9 16S ribosomal RNA gene, partial sequence	FJ796245	1476		626774

GC content

@ref	GC-content (mol%)	Method
43976	39	real time PCR (RTD-PCR)
24763	39.0	fluorimetric
67770	39	thermal denaturation, midpoint method (Tm)
67770	37.8	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Proteus terrae subsp. cibarius JCM 30699
NCBI: GCA_003144495

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	98.70	no
125439	motility	BacteriaNetⓘ	no	53.10	no
125439	gram_stain	BacteriaNetⓘ	negative	98.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	96.70	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Proteus cibarius strain JCM 30699
PATRIC: 626774.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.99	yes
125438	anaerobic	anaerobicⓘ	no	91.72	yes
125438	spore-forming	spore-formingⓘ	no	90.23	no
125438	aerobic	aerobicⓘ	no	77.09	yes
125438	thermophilic	thermophileⓘ	no	98.95	no
125438	flagellated	motile2+ⓘ	yes	73.01	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Proteus cibarius sp. nov., a swarming bacterium from Jeotgal, a traditional Korean fermented seafood, and emended description of the genus Proteus.	Hyun DW, Jung MJ, Kim MS, Shin NR, Kim PS, Whon TW, Bae JW	Int J Syst Evol Microbiol	10.1099/ijsem.0.001002	2016

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#24763	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 100173
#43976	Dong-Wook Hyun, Mi-Ja Jung, Min-Soo Kim, Na-Ri Shin, Pil Soo Kim, Tae Woong Whon, Jin-Woo Bae: Proteus cibarius sp. nov., a swarming bacterium from Jeotgal, a traditional Korean fermented seafood, and emended description of the genus Proteus. IJSEM 66: 2158 - 2164 2016 ( DOI 10.1099/ijsem.0.001002 , PubMed 26944634 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68368	Automatically annotated from API 20E .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Proteus terrae subsp. cibarius (DSM 100173, JCM 30699, KACC 18404)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Antibiotic resistance

Metabolite production

Metabolite tests

Enzymes

Fatty acid profile

API 20E

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_003144495

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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