Name: Streptomyces spongiicola HNM0071
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 132965

Type strain:

Species: Streptomyces spongiicola

Strain Designation: HNM0071

Culture col. no.: DSM 103383, CCTCC AA 2015018, KCTC 39604

Strain history: <- Huang Xiaolong

NCBI tax ID(s): 1690221 (species)

SI-ID 398604

DSM 103383

Section

Streptomyces spongiicola HNM0071 is an aerobe, Gram-positive bacterium that was isolated from sponge.

Gram-positive
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces spongiicola**
	Full Scientific Name (LPSN)	Streptomyces spongiicola Huang et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #43820]	Gram stain	positive

[Ref.: #43820]	Motility	no

Multimedia content

[Ref.: #24753]

Caption:

Medium 65 28°C

[Ref.: #24753]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #24753]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #24753]

Culture medium growth

[Ref.: #24753]

Culture medium link

Medium recipe at MediaDive

[Ref.: #24753]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #24753]	growth	28 °C
[Ref.: #43820]	growth	20-40 °C
[Ref.: #43820]	optimum	28 °C
[Ref.: #67771]	growth	28 °C

[Ref.: #24753]	Temperature range	mesophilic
[Ref.: #43820]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #43820]			optimum	8
[Ref.: #43820]			growth	6-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43820]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #43820]

Halophily / tolerance level

non-halophilic

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43820]		NaCl		growth	0-5	%(w/v)
[Ref.: #43820]		NaCl		optimum	0	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43820]	adenine ChEBI	+	nitrogen source
[Ref.: #43820]	alpha-L-rhamnose ChEBI	-	carbon source
[Ref.: #43820]	cellulose ChEBI	-	fermentation
[Ref.: #43820]	D-galactose ChEBI	+	carbon source
[Ref.: #43820]	D-glucose ChEBI	+	carbon source
[Ref.: #43820]	D-xylose ChEBI	-	carbon source
[Ref.: #43820]	fructose ChEBI	+	carbon source
[Ref.: #43820]	gelatin ChEBI	-	fermentation
[Ref.: #43820]	glycine ChEBI	+	nitrogen source
[Ref.: #43820]	hypoxanthine ChEBI	-	nitrogen source
[Ref.: #43820]	L-alanine ChEBI	+	nitrogen source
[Ref.: #43820]	L-arabinose ChEBI	-	carbon source
[Ref.: #43820]	L-arginine ChEBI	+	nitrogen source
[Ref.: #43820]	L-asparagine ChEBI	+	nitrogen source
[Ref.: #43820]	L-leucine ChEBI	+	nitrogen source
[Ref.: #43820]	L-lysine ChEBI	+	nitrogen source
[Ref.: #43820]	L-phenylalanine ChEBI	-	nitrogen source
[Ref.: #43820]	L-tryptophan ChEBI	-	nitrogen source
[Ref.: #43820]	L-tyrosine ChEBI	-	nitrogen source
[Ref.: #43820]	L-valine ChEBI	+	nitrogen source
[Ref.: #43820]	mannitol ChEBI	-	carbon source
[Ref.: #43820]	myo-inositol ChEBI	-	carbon source
[Ref.: #43820]	raffinose ChEBI	-	carbon source
[Ref.: #43820]	ribose ChEBI	+	carbon source
[Ref.: #43820]	starch ChEBI	+	hydrolysis
[Ref.: #43820]	sucrose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #43820]	chloramphenicol ChEBI				yes	30	µg/mL
[Ref.: #43820]	gentamicin ChEBI	yes	10	µg/mL
[Ref.: #43820]	kanamycin ChEBI	yes	30	µg/mL
[Ref.: #43820]	nalidixic acid ChEBI	yes	30	µg/mL
[Ref.: #43820]	novobiocin ChEBI				yes	5	µg/mL
[Ref.: #43820]	rifampicin ChEBI	yes	5	µg/mL
[Ref.: #43820]	streptomycin ChEBI	yes	50	µg/mL
[Ref.: #43820]	sulfamethoxazole ChEBI				yes	23.75	µg/mL
[Ref.: #43820]	tetracycline ChEBI	yes	30	µg/mL
[Ref.: #43820]	tobramycin ChEBI	yes	10	µg/mL

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	cellulose degradation	100	5 of 5
[Ref.: #66794]	phenylacetate degradation (aerobic)	100	5 of 5
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	L-lactaldehyde degradation	100	3 of 3
[Ref.: #66794]	molybdenum cofactor biosynthesis	100	9 of 9
[Ref.: #66794]	glycogen metabolism	100	5 of 5
[Ref.: #66794]	pentose phosphate pathway	100	11 of 11
[Ref.: #66794]	1,4-dihydroxy-6-naphthoate biosynthesis	100	6 of 6
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	daunorubicin biosynthesis	100	9 of 9
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	cardiolipin biosynthesis	100	7 of 7
[Ref.: #66794]	threonine metabolism	100	10 of 10
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	valine metabolism	100	9 of 9
[Ref.: #66794]	glycolate and glyoxylate degradation	100	6 of 6
[Ref.: #66794]	starch degradation	100	10 of 10
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	aerobactin biosynthesis	100	1 of 1
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	metabolism of amino sugars and derivatives	100	5 of 5
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	biotin biosynthesis	100	4 of 4
[Ref.: #66794]	glycine betaine biosynthesis	100	5 of 5
[Ref.: #66794]	ribulose monophosphate pathway	100	2 of 2
[Ref.: #66794]	phenylalanine metabolism	92.31	12 of 13
[Ref.: #66794]	myo-inositol biosynthesis	90	9 of 10
[Ref.: #66794]	serine metabolism	88.89	8 of 9
[Ref.: #66794]	CO2 fixation in Crenarchaeota	88.89	8 of 9
[Ref.: #66794]	aspartate and asparagine metabolism	88.89	8 of 9
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	C4 and CAM-carbon fixation	87.5	7 of 8
[Ref.: #66794]	gluconeogenesis	87.5	7 of 8
[Ref.: #66794]	peptidoglycan biosynthesis	86.67	13 of 15
[Ref.: #66794]	citric acid cycle	85.71	12 of 14
[Ref.: #66794]	propanol degradation	85.71	6 of 7
[Ref.: #66794]	reductive acetyl coenzyme A pathway	85.71	6 of 7
[Ref.: #66794]	ubiquinone biosynthesis	85.71	6 of 7
[Ref.: #66794]	photosynthesis	85.71	12 of 14
[Ref.: #66794]	vitamin B12 metabolism	85.29	29 of 34
[Ref.: #66794]	leucine metabolism	84.62	11 of 13
[Ref.: #66794]	NAD metabolism	83.33	15 of 18
[Ref.: #66794]	purine metabolism	82.98	78 of 94
[Ref.: #66794]	alanine metabolism	82.76	24 of 29
[Ref.: #66794]	glycolysis	82.35	14 of 17
[Ref.: #66794]	glutamate and glutamine metabolism	82.14	23 of 28
[Ref.: #66794]	metabolism of disaccharids	81.82	9 of 11
[Ref.: #66794]	proline metabolism	81.82	9 of 11
[Ref.: #66794]	tryptophan metabolism	81.58	31 of 38
[Ref.: #66794]	flavin biosynthesis	80	12 of 15
[Ref.: #66794]	factor 420 biosynthesis	80	4 of 5
[Ref.: #66794]	propionate fermentation	80	8 of 10
[Ref.: #66794]	ethylmalonyl-CoA pathway	80	4 of 5
[Ref.: #66794]	arginine metabolism	79.17	19 of 24
[Ref.: #66794]	glutathione metabolism	78.57	11 of 14
[Ref.: #66794]	heme metabolism	78.57	11 of 14
[Ref.: #66794]	allantoin degradation	77.78	7 of 9
[Ref.: #66794]	d-mannose degradation	77.78	7 of 9
[Ref.: #66794]	vitamin B1 metabolism	76.92	10 of 13
[Ref.: #66794]	pyrimidine metabolism	75.56	34 of 45
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	isoleucine metabolism	75	6 of 8
[Ref.: #66794]	acetate fermentation	75	3 of 4
[Ref.: #66794]	sulfopterin metabolism	75	3 of 4
[Ref.: #66794]	cyclohexanol degradation	75	3 of 4
[Ref.: #66794]	dTDPLrhamnose biosynthesis	75	6 of 8
[Ref.: #66794]	butanoate fermentation	75	3 of 4
[Ref.: #66794]	ketogluconate metabolism	75	6 of 8
[Ref.: #66794]	polyamine pathway	73.91	17 of 23
[Ref.: #66794]	lysine metabolism	73.81	31 of 42
[Ref.: #66794]	tetrahydrofolate metabolism	71.43	10 of 14
[Ref.: #66794]	lipid metabolism	70.97	22 of 31
[Ref.: #66794]	methionine metabolism	69.23	18 of 26
[Ref.: #66794]	non-pathway related	68.42	26 of 38
[Ref.: #66794]	octane oxidation	66.67	2 of 3
[Ref.: #66794]	acetyl CoA biosynthesis	66.67	2 of 3
[Ref.: #66794]	IAA biosynthesis	66.67	2 of 3
[Ref.: #66794]	enterobactin biosynthesis	66.67	2 of 3
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	66.67	8 of 12
[Ref.: #66794]	cyanate degradation	66.67	2 of 3
[Ref.: #66794]	cysteine metabolism	66.67	12 of 18
[Ref.: #66794]	histidine metabolism	65.52	19 of 29
[Ref.: #66794]	tyrosine metabolism	64.29	9 of 14
[Ref.: #66794]	urea cycle	61.54	8 of 13
[Ref.: #66794]	isoprenoid biosynthesis	61.54	16 of 26
[Ref.: #66794]	phosphatidylethanolamine bioynthesis	61.54	8 of 13
[Ref.: #66794]	oxidative phosphorylation	61.54	56 of 91
[Ref.: #66794]	3-phenylpropionate degradation	60	9 of 15
[Ref.: #66794]	arachidonate biosynthesis	60	3 of 5
[Ref.: #66794]	4-hydroxyphenylacetate degradation	60	6 of 10
[Ref.: #66794]	3-chlorocatechol degradation	60	3 of 5
[Ref.: #66794]	Entner Doudoroff pathway	60	6 of 10
[Ref.: #66794]	carotenoid biosynthesis	59.09	13 of 22
[Ref.: #66794]	degradation of sugar alcohols	56.25	9 of 16
[Ref.: #66794]	4-hydroxymandelate degradation	55.56	5 of 9
[Ref.: #66794]	sulfate reduction	53.85	7 of 13
[Ref.: #66794]	phenylpropanoid biosynthesis	53.85	7 of 13
[Ref.: #66794]	grixazone biosynthesis	50	1 of 2
[Ref.: #66794]	mannosylglycerate biosynthesis	50	1 of 2
[Ref.: #66794]	pantothenate biosynthesis	50	3 of 6
[Ref.: #66794]	carnitine metabolism	50	4 of 8
[Ref.: #66794]	aminopropanol phosphate biosynthesis	50	1 of 2
[Ref.: #66794]	kanosamine biosynthesis II	50	1 of 2
[Ref.: #66794]	vitamin E metabolism	50	2 of 4
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	CMP-KDO biosynthesis	50	2 of 4
[Ref.: #66794]	glycine metabolism	50	5 of 10
[Ref.: #66794]	phenol degradation	50	10 of 20
[Ref.: #66794]	phenylmercury acetate degradation	50	1 of 2
[Ref.: #66794]	bile acid biosynthesis, neutral pathway	47.06	8 of 17
[Ref.: #66794]	degradation of pentoses	46.43	13 of 28
[Ref.: #66794]	cholesterol biosynthesis	45.45	5 of 11
[Ref.: #66794]	nitrate assimilation	44.44	4 of 9
[Ref.: #66794]	lipid A biosynthesis	44.44	4 of 9
[Ref.: #66794]	degradation of hexoses	44.44	8 of 18
[Ref.: #66794]	androgen and estrogen metabolism	43.75	7 of 16
[Ref.: #66794]	benzoyl-CoA degradation	42.86	3 of 7
[Ref.: #66794]	coenzyme M biosynthesis	40	4 of 10
[Ref.: #66794]	bacilysin biosynthesis	40	2 of 5
[Ref.: #66794]	lipoate biosynthesis	40	2 of 5
[Ref.: #66794]	D-cycloserine biosynthesis	40	2 of 5
[Ref.: #66794]	hydrogen production	40	2 of 5
[Ref.: #66794]	arachidonic acid metabolism	38.89	7 of 18
[Ref.: #66794]	vitamin B6 metabolism	36.36	4 of 11
[Ref.: #66794]	ascorbate metabolism	36.36	8 of 22
[Ref.: #66794]	degradation of sugar acids	36	9 of 25
[Ref.: #66794]	selenocysteine biosynthesis	33.33	2 of 6
[Ref.: #66794]	methanogenesis from CO2	33.33	4 of 12
[Ref.: #66794]	sulfoquinovose degradation	33.33	1 of 3
[Ref.: #66794]	methane metabolism	33.33	1 of 3
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
[Ref.: #66794]	sphingosine metabolism	33.33	2 of 6
[Ref.: #66794]	mevalonate metabolism	28.57	2 of 7
[Ref.: #66794]	d-xylose degradation	27.27	3 of 11
[Ref.: #66794]	toluene degradation	25	1 of 4
[Ref.: #66794]	lactate fermentation	25	1 of 4
[Ref.: #66794]	chlorophyll metabolism	22.22	4 of 18
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24753]	Sample type/isolated from	sponge
[Ref.: #24753]	Geographic location (country and/or sea, region)	Hainan province, coast of Sanya city
[Ref.: #24753]	Country	China
[Ref.: #24753]	Country ISO 3 Code	CHN
[Ref.: #24753]	Continent	Asia

[Ref.: #43820]	Sample type/isolated from	A marine sponge collected from the coast of Sanya City
[Ref.: #43820]	Geographic location (country and/or sea, region)	Hainan Province
[Ref.: #43820]	Country	China
[Ref.: #43820]	Country ISO 3 Code	CHN
[Ref.: #43820]	Continent	Asia
[Ref.: #43820]	Isolation date	2011-05

[Ref.: #67771]	Sample type/isolated from	From unidentified sponge
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Terrestrial	#Coast
#Host	#Invertebrates (Other)	#Porifera (Sponges)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KT327868 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	9
Soil Samples	28
Animal Samples	2
Plant Samples	14
Total Samples	53

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #24753]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24753]	Streptomyces spongiicola strain HNM0071 16S ribosomal RNA gene, partial sequence	KT327868	1438	ENA	1690221 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces spongiicola HNM0071	GCA_003122365	complete	GenBank	1690221 tax ID	*
[Ref.: #66792]	Streptomyces spongiicola HNM0071	2851877514	complete	JGI IMG/M	1690221 tax ID	*

[Ref.: #24753]

GC-content

69.8 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces spongiicola HNM0071 NCBI: GCA_003122365.1
[Ref.: #69480]	flagellated	no	97.932	yes
[Ref.: #69480]	gram-positive	yes	91.16	yes
[Ref.: #69480]	anaerobic	no	98.387	yes
[Ref.: #69480]	halophile	no	93.84	yes
[Ref.: #69480]	spore-forming	yes	95.076	no
[Ref.: #69480]	glucose-util	yes	89.57	yes
[Ref.: #69480]	aerobic	yes	86.131	yes
[Ref.: #69480]	motile	no	94.542	yes
[Ref.: #69480]	thermophile	no	94.155	yes
[Ref.: #69480]	glucose-ferment	no	89.135	no

Availability in culture collections External links

[Ref.: #24753]

Culture collection no.

DSM 103383, CCTCC AA 2015018, KCTC 39604

[Ref.: #91242]

SI-ID 398604

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces tirandamycinicus sp. nov., a Novel Marine Sponge-Derived Actinobacterium With Antibacterial Potential Against Streptococcus agalactiae.	Huang X, Kong F, Zhou S, Huang D, Zheng J, Zhu W	Front Microbiol	10.3389/fmicb.2019.00482	2019	*
Phylogeny	Isolation and structure determination of new linear azole-containing peptides spongiicolazolicins A and B from Streptomyces sp. CWH03.	Suzuki M, Komaki H, Kaweewan I, Dohra H, Hemmi H, Nakagawa H, Yamamura H, Hayakawa M, Kodani S	Appl Microbiol Biotechnol	10.1007/s00253-020-11016-w	2020	*
Phylogeny	Streptomyces marianii sp. nov., a novel marine actinomycete from southern coast of India.	Iniyan AM, Wink J, Landwehr W, Ramprasad EVV, Sasikala C, Ramana CV, Schumann P, Sproer C, Bunk B, Joseph FRS, Joshua SA, Shyl ESD, Kannan RR, Vincent SGP	J Antibiot (Tokyo)	10.1038/s41429-020-0360-z	2020	*
Phylogeny	Streptomyces spongiicola sp. nov., an actinomycete derived from marine sponge.	Huang X, Zhou S, Huang D, Chen J, Zhu W	Int J Syst Evol Microbiol	10.1099/ijsem.0.000782	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24753

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 103383

#43820

Xiaolong Huang, Shuangqing Zhou, Dongyi Huang, Jing Chen, Weiming Zhu: Streptomyces spongiicola sp. nov., an actinomycete derived from marine sponge. IJSEM 66: 738 - 743 2016 ( DOI 10.1099/ijsem.0.000782 , PubMed 26597038 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#91242

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID398604.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Streptomyces spongiicola in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF