Delftia deserti (DSM 29949, JCM 30639, KCTC 42377)

Name: Delftia deserti (DSM 29949, JCM 30639, KCTC 42377)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 132953

Type strain

Culture col. no. DSM 29949 JCM 30639 KCTC 42377 YIM Y792

NCBI tax ID(s) 1651218

Special Collections DSMZ JCM KCTC

History <- W.-J. Li, Yunnan Institute of Microbiology, Kunming, P.R.China; YIM Y792 <- Z.-F. Yan, College of Chinese Medicinal Materials, Jilin Agricultural University, Changchun, P. R. China W.-J. Li; Yunnan Inst. of Microbiol., Yunnan Univ., China; YIM Y792. <- Wenjun Li

Links

Delftia deserti DSM 29949 is an aerobe bacterium that was isolated from desert soil.

aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 404470

KCTC 42377,JCM 30639,DSM 29949

@ref 20215

Last LPSN update 2026-02-09 11:31:50

Domain Bacteria

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Comamonadaceae

Genus Delftia

Species Delftia deserti

Full scientific name Delftia deserti Li et al. 2015

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
24741	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)		Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
24741	positive	growth	28
67770	positive	growth	30
67771	positive	growth	30

Physiology and metabolism

Oxygen tolerance

67771

Oxygen toleranceaerobe

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Desert
#Environmental	#Terrestrial	#Soil
#Condition	#Xerophilic	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
24741	desert soil	Xinjiang Uyghur Autonomous Region, Turpan (42°12'33''N, 89°17'47''E)	China	CHN	Asia	42.2092	89.2964 42.2092/89.2964
67770	Desert soil from Turpan in Xinjiang Uyghur Autonomous Region		China	CHN	Asia
67771	From desert soil		China	CHN	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
24741	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM4265348v1 assembly for Delftia deserti KCTC 42377	contig	GCA_042653485	1651218	69.91
124043	ASM4268236v1 assembly for Delftia deserti KCTC 42377	scaffold	GCA_042682365	1651218	52.61

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
24741	Delftia deserti strain YIM Y792 16S ribosomal RNA gene, partial sequence	KP300804	1524		1651218

GC content

@ref	GC-content (mol%)	Method
24741	70.3	high performance liquid chromatography (HPLC)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Phylogenomic analysis of the genus Delftia reveals distinct major lineages with ecological specializations.	Bhat SV, Maughan H, Cameron ADS, Yost CK.	Microb Genom	10.1099/mgen.0.000864	2022
	Polyphasic characterization of Delftia acidovorans ESM-1, a facultative methylotrophic bacterium isolated from rhizosphere of Eruca sativa.	Khalifa AYZ, AlMalki M.	Saudi J Biol Sci	10.1016/j.sjbs.2018.05.015	2019
Genetics	Catalyzing rapid discovery of gold-precipitating bacterial lineages with university students.	Riley NG, Goller CC, Leggett ZH, Lewis DM, Ciccone K, Dunn RR.	PeerJ	10.7717/peerj.8925	2020
Pathogenicity	Anti-quorum Sensing and Anti-biofilm Activity of Delftia tsuruhatensis Extract by Attenuating the Quorum Sensing-Controlled Virulence Factor Production in Pseudomonas aeruginosa.	Singh VK, Mishra A, Jha B.	Front Cell Infect Microbiol	10.3389/fcimb.2017.00337	2017
Phylogeny	Delftia deserti sp. nov., isolated from a desert soil sample.	Li CT, Yan ZF, Chu X, Hussain F, Xian WD, Yunus Z, Hozzein WN, Abaydulla G, Li WJ	Antonie Van Leeuwenhoek	10.1007/s10482-015-0440-4	2015

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#24741	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 29949
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Delftia deserti (DSM 29949, JCM 30639, KCTC 42377)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_042653485

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

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