Name: Klebsiella quasipneumoniae subsp. similipneumoniae CW-D 3
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 132932

Type strain:

Species: Klebsiella quasipneumoniae subsp. similipneumoniae

Strain Designation: CW-D 3

Culture col. no.: DSM 100662, CCTCC AB 206144, KCTC 12878, LMG 24441

Strain history: <- BCCM; LMG 24441 <- Y. Zhou, Nanjing Agric. Univ., P.R. China; CW-D 3

NCBI tax ID(s): 1463164 (subspecies)

SI-ID 379772

LMG 24441, KCTC 12878

Special Collections

DSMZ
KCTC

Other strains from Klebsiella quasipneumoniae subsp. similipneumoniae

Section

When using BacDive for research please cite our paper

Klebsiella quasipneumoniae subsp. similipneumoniae CW-D 3 is a mesophilic human pathogen that was isolated from polluted farmland soil, surface layer.

human pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Enterobacterales*
	Family	*Enterobacteriaceae*
	Genus	*Klebsiella*
	Species	**Klebsiella quasipneumoniae subsp. similipneumoniae**
	Full Scientific Name (LPSN)	Klebsiella quasipneumoniae subsp. similipneumoniae Brisse et al. 2014

Synonym

Klebsiella alba

Information on morphological and physiological properties Morphology

[Ref.: #125438]	Gram stain	negative Confidence in %100
[Ref.: #125439]	Gram stain	negative Confidence in %98.8

Information on culture and growth conditions Culture and growth conditions

[Ref.: #24720]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #24720]

Culture medium growth

[Ref.: #24720]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #24720]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #24720]

Culture medium growth

[Ref.: #24720]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #24720]			growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #125439]

Oxygen tolerance

aerobe Confidence in %94.6

[Ref.: #125439]

Ability of spore formation

no Confidence in %91.9

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68368]	amygdalin ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	arginine ChEBI	-	hydrolysis	* from API 20E
[Ref.: #68368]	citrate ChEBI	+	assimilation	* from API 20E
[Ref.: #68368]	D-glucose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	D-mannitol ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	gelatin ChEBI	-	hydrolysis	* from API 20E
[Ref.: #68368]	L-arabinose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	L-rhamnose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	lysine ChEBI	+	degradation	* from API 20E
[Ref.: #68368]	melibiose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	myo-inositol ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #68368]	sorbitol ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	sucrose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	+	hydrolysis	* from API 20E
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #68368]	acetoin ChEBI	yes	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	+		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	arginine dihydrolase	-	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	+	3.2.1.23	* from API 20E
[Ref.: #68368]	cytochrome oxidase	-	1.9.3.1	* from API 20E
[Ref.: #68368]	gelatinase	-		* from API 20E
[Ref.: #68368]	lysine decarboxylase	+	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	+	3.5.1.5	* from API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #24720]	18415	+	-	+	-	+	-	+	-	-	+	-	+	+	+	+	+	+	+	+	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24720]	Sample type/isolated from	polluted farmland soil, surface layer
[Ref.: #24720]	Geographic location (country and/or sea, region)	Jiangsu province
[Ref.: #24720]	Country	China
[Ref.: #24720]	Country ISO 3 Code	CHN
[Ref.: #24720]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	-
#Engineered	#Contamination	-
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EF154517 (>99% sequence identity) for Klebsiella from Microbeatlas

Aquatic Samples	67
Soil Samples	3
Animal Samples	157
Plant Samples	43
Total Samples	270

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #24720]	Pathogenicity (human)	yes
[Ref.: #24720]	Pathogenicity (animal)	yes
[Ref.: #24720]	Biosafety level	2	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24720]	Klebsiella alba strain CW-D 3 16S ribosomal RNA gene, partial sequence	EF154517	1456	GenBank ENA	1463164 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Klebsiella quasipneumoniae strain FDAARGOS 1443	1463165.492	complete	PATRIC	1463165 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Klebsiella quasipneumoniae strain FDAARGOS 1443 strain Not applicable PATRIC: 1463165.492
[Ref.: #125438]	gram-positive	gram-positiveⓘ	no	100	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	97.799	no
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	88.621	no
[Ref.: #125438]	aerobic	aerobicⓘ	no	57.35	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	99.5	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	no	78.168	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Klebsiella quasipneumoniae strain FDAARGOS 1443 PATRIC: 1463165.492
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	91.9
[Ref.: #125439]	BacteriaNet	motilityⓘ	yes	76.6
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	negative	98.8
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	aerobe	94.6

Availability in culture collections External links

[Ref.: #24720]

Culture collection no.

DSM 100662, CCTCC AB 206144, KCTC 12878, LMG 24441

[Ref.: #91210]

SI-ID 379772

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Klebsiella alba sp. nov., a novel pesticide-tolerant bacterium from a heavily polluted environment.	Xu J, Li W, Chen X, Zhou Y	J Gen Appl Microbiol	10.2323/jgam.56.241	2010	*
Phylogeny	Klebsiella alba is a later heterotypic synonym of Klebsiella quasipneumoniae subsp. similipneumoniae.	Li CY, Zhou YL, Ji J, Gu CT	Int J Syst Evol Microbiol	10.1099/ijsem.0.001043	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24720

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 100662

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68368

Automatically annotated from API 20E .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#91210

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID379772.1 )

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Klebsiella quasipneumoniae subsp. similipneumoniae in external resources:
SILVA
BRENDA
PANGAEA
GBIF

Klebsiella quasipneumoniae strain FDAARGOS 1443 strain Not applicable

Klebsiella quasipneumoniae strain FDAARGOS 1443

Change proposal

Change proposal