Name: Staphylococcus petrasii P3751
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 132914

Type strain:

Species: Staphylococcus petrasii

Strain Designation: P3751, NRL/St 10/1050

Culture col. no.: DSM 104505, CCM 8418, CCUG 62727

Strain history: <- CCM; CCM 8418 <- R. Pantucek <- P. Petrás <- J. Scharfen; NRL/St 10/1050

NCBI tax ID(s): 1276936 (species)

SI-ID 401239

DSM 104505, CCUG 62727

Section

Staphylococcus petrasii P3751 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from blood, cerebral hemorrhage .

Gram-positive
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Staphylococcaceae*
	Genus	*Staphylococcus*
	Species	**Staphylococcus petrasii**
	Full Scientific Name (LPSN)	Staphylococcus petrasii Pant??ek et al. 2013

	Synonym	Staphylococcus jettensis
	Synonym	Staphylococcus petrasii subsp. jettensis

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

Information on culture and growth conditions Culture and growth conditions

[Ref.: #24702]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #24702]

Culture medium growth

[Ref.: #24702]

Culture medium link

Medium recipe at MediaDive

[Ref.: #24702]

Culture medium composition

expand / minimize

[Ref.: #24702]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #24702]

Culture medium growth

[Ref.: #24702]

Culture medium link

Medium recipe at MediaDive

[Ref.: #24702]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #24702]			growth	37 °C
[Ref.: #62891]			growth	37 °C

[Ref.: #24702]	Temperature range	mesophilic
[Ref.: #62891]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #62891]

Oxygen tolerance

aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.853

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68375]	arabinose ChEBI	-	fermentation	* from API ID32STA
[Ref.: #68375]	arginine ChEBI	+	hydrolysis	* from API ID32STA
[Ref.: #68375]	cellobiose ChEBI	-	fermentation	* from API ID32STA
[Ref.: #68375]	D-fructose ChEBI	+	fermentation	* from API ID32STA
[Ref.: #68375]	D-glucose ChEBI	+	fermentation	* from API ID32STA
[Ref.: #68375]	D-mannitol ChEBI	-	fermentation	* from API ID32STA
[Ref.: #68375]	D-mannose ChEBI	+	fermentation	* from API ID32STA
[Ref.: #68375]	D-ribose ChEBI	-	fermentation	* from API ID32STA
[Ref.: #68375]	esculin ChEBI	-	hydrolysis	* from API ID32STA
[Ref.: #68375]	lactose ChEBI	-	fermentation	* from API ID32STA
[Ref.: #68375]	maltose ChEBI	+	fermentation	* from API ID32STA
[Ref.: #68375]	N-acetylglucosamine ChEBI	-	fermentation	* from API ID32STA
[Ref.: #68375]	nitrate ChEBI	+	reduction	* from API ID32STA
[Ref.: #68375]	ornithine ChEBI	-	degradation	* from API ID32STA
[Ref.: #68375]	raffinose ChEBI	-	fermentation	* from API ID32STA
[Ref.: #68375]	trehalose ChEBI	+	fermentation	* from API ID32STA
[Ref.: #68375]	turanose ChEBI	-	fermentation	* from API ID32STA
[Ref.: #68375]	urea ChEBI	+	hydrolysis	* from API ID32STA
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68375]		acetoin ChEBI	yes	* from API ID32STA

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #68375]		acetoin ChEBI	+	* from API ID32STA

	Enzyme	Enzyme activity	EC number
[Ref.: #68375]	alkaline phosphatase	-	3.1.3.1	* from API ID32STA
[Ref.: #68375]	arginine dihydrolase	+	3.5.3.6	* from API ID32STA
[Ref.: #68375]	beta-galactosidase	-	3.2.1.23	* from API ID32STA
[Ref.: #68375]	beta-glucosidase	-	3.2.1.21	* from API ID32STA
[Ref.: #68375]	beta-glucuronidase	-	3.2.1.31	* from API ID32STA
[Ref.: #68375]	L-arginine arylamidase	-		* from API ID32STA
[Ref.: #68375]	ornithine decarboxylase	-	4.1.1.17	* from API ID32STA
[Ref.: #68375]	pyrrolidonyl arylamidase	+	3.4.19.3	* from API ID32STA
[Ref.: #68375]	urease	+	3.5.1.5	* from API ID32STA

API® ID32STA:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	Ornithine decarboxylaseODC	Esculin hydrolysisESC	Fermentation of D-glucoseGLU	Fermentation of D-fructoseFRU	Fermentation of D-mannoseMNE	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of trehaloseTRE	Fermentation of D-mannitolMAN	Fermentation of raffinoseRAF	Fermentation of D-riboseRIB	Fermentation of cellobioseCEL	Reduction of nitrateNIT	Acetoin production (Voges Proskauer test)VP	beta-Galactosidasebeta GAL	L-arginine arylamidaseArgA	Alkaline phosphatasePAL	Pyrrolidonyl arylamidasePyrA	Novobiocin resistanceNOVO	Fermentation of sucroseSAC	Fermentation of N-acetyl-glucosamineNAG	Fermentation of turanoseTUR	Fermentation of arabinoseARA	beta-Glucuronidasebeta GUR
[Ref.: #24702]	6240	+	+	-	-	+	+	+	+	-	+	-	-	-	-	+	+	-	-	-	+	-	+	-	-	-	-
[Ref.: #24702]	6200	+	+	-	-	+	+	+	+	-	+	-	-	-	-	+	+	-	-	-	+	+/-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24702]	Sample type/isolated from	blood, cerebral hemorrhage (male, 59 years)
[Ref.: #24702]	Geographic location (country and/or sea, region)	Trutnov
[Ref.: #24702]	Country	Czech Republic
[Ref.: #24702]	Country ISO 3 Code	CZE
[Ref.: #24702]	Continent	Europe

[Ref.: #62891]	Sample type/isolated from	Blood,cerebral hemorrage,59 year old male
[Ref.: #62891]	Sampling date	2009-12-01
[Ref.: #62891]	Geographic location (country and/or sea, region)	Trutnov
[Ref.: #62891]	Country	Czech Republic
[Ref.: #62891]	Country ISO 3 Code	CZE
[Ref.: #62891]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Infection	#Patient	-
#Host Body-Site	#Organ	#Brain
#Host Body Product	#Fluids	#Blood
#Host	#Human	#Male

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JX139845 (>99% sequence identity) for Staphylococcus from Microbeatlas

Aquatic Samples	6
Soil Samples	23
Animal Samples	232
Plant Samples
Total Samples	261

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #24702]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24702]	Staphylococcus petrasii subsp. petrasii strain CCM 8418 16S ribosomal RNA gene, partial sequence	JX139845	1477	ENA	1276937 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Staphylococcus petrasii CCM 8418	GCA_004684865	scaffold	GenBank	1276936 tax ID	*
[Ref.: #66792]	Staphylococcus petrasii CCUG 62727	GCA_002902565	scaffold	GenBank	1276936 tax ID	*
[Ref.: #66792]	Staphylococcus petrasii strain DSM 104505	1276936.4	wgs	PATRIC	1276936 tax ID	*
[Ref.: #66792]	Staphylococcus petrasii subsp. petrasii strain CCM 8418	1276937.5	wgs	PATRIC	1276936 tax ID	*
[Ref.: #66792]	Staphylococcus petrasii subsp. petrasii strain CCUG 62727	1276937.3	wgs	PATRIC	1276936 tax ID	*
[Ref.: #66792]	Staphylococcus petrasii DSM 104505	2861319090	draft	JGI IMG/M	1276936 tax ID	*

[Ref.: #24702]

GC-content

34.9 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Staphylococcus petrasii subsp. petrasii strain CCUG 62727 PATRIC: 1276937.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Staphylococcus petrasii CCM 8418 NCBI: GCA_004684865.1
[Ref.: #69480]	motile	no	88.195	no
[Ref.: #69480]	flagellated	no	91.107	no
[Ref.: #69480]	gram-positive	yes	91.426	no
[Ref.: #69480]	anaerobic	no	99.436	no
[Ref.: #69480]	aerobic	yes	92.801	yes
[Ref.: #69480]	halophile	yes	95.93	no
[Ref.: #69480]	spore-forming	no	91.05	no
[Ref.: #69480]	glucose-util	yes	89.688	no
[Ref.: #69480]	thermophile	no	99.788	yes
[Ref.: #69480]	glucose-ferment	yes	80.627	yes

Availability in culture collections External links

[Ref.: #24702]

Culture collection no.

DSM 104505, CCM 8418, CCUG 62727

[Ref.: #91192]

SI-ID 401239

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Staphylococcus petrasii sp. nov. including S. petrasii subsp. petrasii subsp. nov. and S. petrasii subsp. croceilyticus subsp. nov., isolated from human clinical specimens and human ear infections.	Pantucek R, Svec P, Dajcs JJ, Machova I, Cernohlavkova J, Sedo O, Gelbicova T, Maslanova I, Doskar J, Zdrahal Z, Ruzickova V, Sedlacek I	Syst Appl Microbiol	10.1016/j.syapm.2012.11.004	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24702

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 104505

#62891 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 62727

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68375

Automatically annotated from API ID32STA .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#91192

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID401239.1 )

* These data were automatically processed and therefore are not curated

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Staphylococcus petrasii subsp. petrasii strain CCUG 62727

Staphylococcus petrasii CCM 8418

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