Name: Kibdelosporangium aridum subsp. largum DSM 44150
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 13291

Type strain:

Species: Kibdelosporangium aridum subsp. largum

Culture col. no.: DSM 44150, ATCC 39922, IFO 15152, NBRC 15152, JCM 9107, IMSNU 21347, KCTC 9363, NRRL B-24462

Strain history: IFO 15152 <-- ATCC 39922 <-- Smith Kline & French Labs.; SKF AAD-609.

NCBI tax ID(s): 145996 (subspecies)

SI-ID 41581

ATCC 39922, DSM 44150, IFO 15152, JCM 9107, KCTC 9363, NBRC 15152

Section

Kibdelosporangium aridum subsp. largum DSM 44150 is a mesophilic bacterium that produces antibiotic compounds and was isolated from desert soil.

antibiotic compound production
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Pseudonocardiales*
	Family	*Pseudonocardiaceae*
	Genus	*Kibdelosporangium*
	Species	**Kibdelosporangium aridum subsp. largum**
	Full Scientific Name (LPSN)	Kibdelosporangium aridum subsp. largum Shearer et al. 1988

Information on morphological and physiological properties Morphology

[Ref.: #20008]	Colony color	Beige (1001)
[Ref.: #20008]	Incubation period	10-14 days
[Ref.: #20008]	Cultivation medium used	ISP 2

[Ref.: #20008]	Colony color	Beige (1001)
[Ref.: #20008]	Incubation period	10-14 days
[Ref.: #20008]	Cultivation medium used	ISP 3

[Ref.: #20008]	Colony color	Beige (1001)
[Ref.: #20008]	Incubation period	10-14 days
[Ref.: #20008]	Cultivation medium used	ISP 4

[Ref.: #20008]	Colony color	Beige (1001)
[Ref.: #20008]	Incubation period	10-14 days
[Ref.: #20008]	Cultivation medium used	ISP 5

[Ref.: #20008]	Colony color	Beige (1001)
[Ref.: #20008]	Incubation period	10-14 days
[Ref.: #20008]	Cultivation medium used	ISP 6

[Ref.: #20008]	Multicellular complex forming ability	no
[Ref.: #20008]	Medium Name (multicellularity)	ISP 3

[Ref.: #20008]	Multicellular complex forming ability	no
[Ref.: #20008]	Medium Name (multicellularity)	ISP 4

[Ref.: #20008]	Multicellular complex forming ability	no
[Ref.: #20008]	Medium Name (multicellularity)	ISP 5

[Ref.: #20008]	Multicellular complex forming ability	no
[Ref.: #20008]	Medium Name (multicellularity)	ISP 6

[Ref.: #20008]	Medium Name (multicellularity)	ISP 2

Information on culture and growth conditions Culture and growth conditions

[Ref.: #11550]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #11550]

Culture medium growth

[Ref.: #11550]

Culture medium link

Medium recipe at MediaDive

[Ref.: #11550]

Culture medium composition

expand / minimize

[Ref.: #20008]

Culture medium

ISP 2

[Ref.: #20008]

Culture medium growth

[Ref.: #20008]

Culture medium composition

expand / minimize

[Ref.: #20008]

Culture medium

ISP 3

[Ref.: #20008]

Culture medium growth

[Ref.: #20008]

Culture medium composition

expand / minimize

[Ref.: #20008]

Culture medium

ISP 4

[Ref.: #20008]

Culture medium growth

[Ref.: #20008]

Culture medium composition

expand / minimize

[Ref.: #20008]

Culture medium

ISP 5

[Ref.: #20008]

Culture medium growth

[Ref.: #20008]

Culture medium composition

expand / minimize

[Ref.: #20008]

Culture medium

ISP 6

[Ref.: #20008]

Culture medium growth

[Ref.: #20008]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #11550]	growth	28 °C
[Ref.: #20008]	optimum	28 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #11550]	Temperature range	mesophilic
[Ref.: #20008]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #20008]

Ability of spore formation

[Ref.: #11550]	Name of produced compound	AAD-216
[Ref.: #11550]	Name of produced compound	AAD-609
[Ref.: #11550]	Name of produced compound	glycopeptide antibiotics
[Ref.: #11550]	Name of produced compound	aridicins
[Ref.: #20008]	Name of produced compound	Antibiotic AAD 609
[Ref.: #20008]	Name of produced compound	Aricidin
[Ref.: #20008]	Name of produced compound	Kibdelin
[Ref.: #67770]	Name of produced compound	Kibdelins

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #20008]		NaCl		maximum	2.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68368]	amygdalin ChEBI	-	fermentation	* from API 20E
[Ref.: #20008]	arabinose ChEBI	+
[Ref.: #20008]	cellulose ChEBI	+
[Ref.: #68368]	D-glucose ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	D-mannitol ChEBI	-	fermentation	* from API 20E
[Ref.: #20008]	fructose ChEBI	+
[Ref.: #68368]	gelatin ChEBI	+	hydrolysis	* from API 20E
[Ref.: #20008]	glucose ChEBI	+
[Ref.: #68368]	L-arabinose ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	L-rhamnose ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	lysine ChEBI	-	degradation	* from API 20E
[Ref.: #20008]	mannitol ChEBI	+
[Ref.: #68368]	melibiose ChEBI	-	fermentation	* from API 20E
[Ref.: #20008]	myo-inositol ChEBI	+
[Ref.: #68368]	myo-inositol ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #20008]	raffinose ChEBI	+
[Ref.: #20008]	rhamnose ChEBI	-
[Ref.: #68368]	sorbitol ChEBI	-	fermentation	* from API 20E
[Ref.: #20008]	sucrose ChEBI	+
[Ref.: #68368]	sucrose ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #20008]	xylose ChEBI	-
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68368]		hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]		indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Indole test
[Ref.: #68368]		indole ChEBI	-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68368]	beta-galactosidase	+	3.2.1.23	* from API 20E, API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #68368]	gelatinase	+		* from API 20E
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68368]	lysine decarboxylase	-	4.1.1.18	* from API 20E
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68368]	ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
	Only first 10 entries are displayed. Click here to see all.

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #20008]	603	+	+	-	-	+	-	+	-	-	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
[Ref.: #11550]	17950	+	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #20008]	797	not determinedn.d.	+	+	+	+	+	+	+	+	+	+	+	+	+	-	+	+	+	+	-
[Ref.: #11550]	14148	-	+	-	+/-	-	+	+/-	-	-	+	+	+	-	+	-	+/-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #11550]	Sample type/isolated from	desert soil
[Ref.: #11550]	Geographic location (country and/or sea, region)	Arizona
[Ref.: #11550]	Country	USA
[Ref.: #11550]	Country ISO 3 Code	USA
[Ref.: #11550]	Continent	North America

[Ref.: #67770]	Sample type/isolated from	Desert soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Pima Country, AZ
[Ref.: #67770]	Country	USA
[Ref.: #67770]	Country ISO 3 Code	USA
[Ref.: #67770]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Desert
#Environmental	#Terrestrial	#Soil
#Condition	#Xerophilic	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ512463 (>99% sequence identity) for Kibdelosporangium from Microbeatlas

Aquatic Samples	2
Soil Samples	107
Animal Samples	5
Plant Samples	13
Total Samples	127

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #11550]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #20008]	Biosafety level	1	German classification

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #11550]	Kibdelosporangium aridum subsp. largum 16S rRNA gene, type strain DSM 44150T	AJ512463	1474	ENA	145996 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Kibdelosporangium aridum subsp. largum NRRL B-24462	GCA_000717205	contig	GenBank	145996 tax ID

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Kibdelosporangium aridum subsp. largum NRRL B-24462 NCBI: GCA_000717205.1
[Ref.: #69480]	motile	no	91.506	no
[Ref.: #69480]	flagellated	no	97.458	no
[Ref.: #69480]	gram-positive	yes	86.904	no
[Ref.: #69480]	anaerobic	no	99.356	no
[Ref.: #69480]	halophile	no	91.729	no
[Ref.: #69480]	spore-forming	yes	95.311	no
[Ref.: #69480]	thermophile	no	99.162	yes
[Ref.: #69480]	glucose-util	yes	89.728	yes
[Ref.: #69480]	aerobic	yes	92.492	no
[Ref.: #69480]	glucose-ferment	no	91.458	yes

Availability in culture collections External links

[Ref.: #11550]

Culture collection no.

DSM 44150, ATCC 39922, IFO 15152, NBRC 15152, JCM 9107, IMSNU 21347, KCTC 9363, NRRL B-24462

[Ref.: #82492]

SI-ID 41581

References

#11550

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44150

#20008

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#82492

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID41581.1 )

* These data were automatically processed and therefore are not curated

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Kibdelosporangium aridum subsp. largum NRRL B-24462

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