Advenella faeciporci (DSM 104993, JCM 17746, KCTC 23732)

Name: Advenella faeciporci (DSM 104993, JCM 17746, KCTC 23732)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 132905

Type strain

Strain Designation M-07

Culture col. no. DSM 104993 JCM 17746 KCTC 23732 M-07

NCBI tax ID(s) 797535

Special Collections DSMZ JCM KCTC Literature strains

Links

Advenella faeciporci M-07 is a mesophilic, Gram-negative, coccus-shaped prokaryote that was isolated from activated sludge; bioreactor treating piggery wastewater.

Gram-negative coccus-shaped mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 406534

LMG 31890,KCTC 23732,JCM 17746,DSM 104993

@ref 20215

Last LPSN update 2025-12-16 10:01:38

Domain Pseudomonadati

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Alcaligenaceae

Genus Advenella

Species Advenella faeciporci

Full scientific name Advenella faeciporci Matsuoka et al. 2012

Morphology

Cell morphology

@ref	Gram stain	Cell width	Cell shape	Confidence
30498	negative	1.75 µm	coccus-shaped
125439	negative			99.3
125438	negative			95.744

Pigmentation

30498

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
24693	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)		Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
24693	positive	growth	30	mesophilic
30498	positive	growth	10-45
30498	positive	optimum	30	mesophilic
67770	positive	growth	30	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
30498	positive	optimum	8
30498	positive	growth	05-11	alkaliphile

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		99.3

Halophily

@ref	Salt	Growth	Tested relation	Concentration
30498	NaCl	positive	growth	0-4 %

Observation

67770

Observationquinones: Q-8

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
30498	28644 ChEBI	2-oxopentanoate	+	carbon source
30498	30089 ChEBI	acetate	+	carbon source
30498	17128 ChEBI	adipate	+	carbon source
68369	17128 ChEBI	adipate	+	assimilation	from API 20NE
30498	16449 ChEBI	alanine	+	carbon source
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
30498	16947 ChEBI	citrate	+	carbon source
68369	17634 ChEBI	D-glucose	-	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68369	16899 ChEBI	D-mannitol	-	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	-	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	-	assimilation	from API 20NE
68369	4853 ChEBI	esculin	-	hydrolysis	from API 20NE
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
68369	24265 ChEBI	gluconate	-	assimilation	from API 20NE
30498	32323 ChEBI	glucuronamide	+	carbon source
30498	29987 ChEBI	glutamate	+	carbon source
30498	17240 ChEBI	itaconate	+	carbon source
30498	21217 ChEBI	L-alaninamide	+	carbon source
68369	30849 ChEBI	L-arabinose	-	assimilation	from API 20NE
30498	24996 ChEBI	lactate	+	carbon source
30498	25017 ChEBI	leucine	+	carbon source
30498	25115 ChEBI	malate	+	carbon source
68369	25115 ChEBI	malate	+	assimilation	from API 20NE
68369	17306 ChEBI	maltose	-	assimilation	from API 20NE
30498	51850 ChEBI	methyl pyruvate	+	carbon source
68369	59640 ChEBI	N-acetylglucosamine	-	assimilation	from API 20NE
68369	17632 ChEBI	nitrate	-	reduction	from API 20NE
30498	18257 ChEBI	ornithine	+	carbon source
30498	18401 ChEBI	phenylacetate	+	carbon source
30498	26271 ChEBI	proline	+	carbon source
30498	17272 ChEBI	propionate	+	carbon source
30498	30031 ChEBI	succinate	+	carbon source
30498	26986 ChEBI	threonine	+	carbon source
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68369	35581 ChEBI	indole		from API 20NE

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68369	beta-glucosidase	-	3.2.1.21	from API 20NE
30498	catalase	+	1.11.1.6
30498	cytochrome oxidase	+	1.9.3.1
68369	cytochrome oxidase	+	1.9.3.1	from API 20NE
68369	gelatinase	-		from API 20NE
68369	urease	-	3.5.1.5	from API 20NE

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
24693	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	+	+	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Bioreactor	-
#Engineered	#Waste	#Activated sludge
#Engineered	#Waste	#Wastewater

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
24693	activated sludge; bioreactor treating piggery wastewater	Japan	JPN	Asia
67770	Nitrifying-denitrifying activated sludge from a laboratory-scale bioreactor treating piggery wastewater

Taxonmaps

69479

Global distribution of 16S sequence AB567741 (>99% sequence identity) for Advenella from Microbeatlas

Aquatic Samples	203
Soil Samples	62
Animal Samples	208
Plant Samples	60
Total Samples	533

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
24693	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1465239v1 assembly for Advenella faeciporci KCTC 23732	contig	GCA_014652395	797535.4	2995200524	797535	68.36
124043	ASM3954129v1 assembly for Advenella faeciporci JCM 17746	contig	GCA_039541295			797535	67.89

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
24693	Advenella faeciporci gene for 16S rRNA, partial sequence	AB567741	1506		797535

GC content

@ref	GC-content (mol%)	Method
24693	49.5
67770	49.5	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Advenella faeciporci KCTC 23732
NCBI: GCA_014652395

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.30	no
125439	motility	BacteriaNetⓘ	yes	72.70	no
125439	gram_stain	BacteriaNetⓘ	negative	99.30	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	77.00	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Advenella faeciporci strain KCTC 23732
PATRIC: 797535.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	95.74	yes
125438	anaerobic	anaerobicⓘ	no	95.86	no
125438	aerobic	aerobicⓘ	yes	81.93	no
125438	spore-forming	spore-formingⓘ	no	89.30	no
125438	thermophilic	thermophileⓘ	no	95.49	no
125438	flagellated	motile2+ⓘ	yes	78.07	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Advenella alkanexedens sp. nov., an alkane-degrading bacterium isolated from biogas slurry samples.	Wang H, Zhou S, Wang Y, Kong D, Guo X, Zhu J, Dong W, Ruan Z	Int J Syst Evol Microbiol	10.1099/ijsem.0.000811	2015
Phylogeny	Advenella faeciporci sp. nov., a nitrite-denitrifying bacterium isolated from nitrifying-denitrifying activated sludge collected from a laboratory-scale bioreactor treating piggery wastewater.	Matsuoka M, Park S, An SY, Miyahara M, Kim SW, Kamino K, Fushinobu S, Yokota A, Wakagi T, Shoun H	Int J Syst Evol Microbiol	10.1099/ijs.0.037440-0	2012
Phylogeny	Advenella mandrilli sp. nov., a bacterium isolated from the faeces of Mandrillus sphinx.	Wang Q, Han XL, Fang ZQ, Zhang CL, Li C, Lu T	Antonie Van Leeuwenhoek	10.1007/s10482-021-01695-4	2022

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#24693	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 104993
#30498	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26831 (see below)
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68369	Automatically annotated from API 20NE .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Advenella faeciporci (DSM 104993, JCM 17746, KCTC 23732)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Spore formation

Halophily

Observation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API 20NE

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_014652395

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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