Name: Advenella faeciporci M-07
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 132905

Type strain:

Species: Advenella faeciporci

Strain Designation: M-07

Culture col. no.: DSM 104993, JCM 17746, KCTC 23732

Strain history: M. Matsuoka M-07.

NCBI tax ID(s): 797535 (species)

SI-ID 406534

DSM 104993

Section

Advenella faeciporci M-07 is a mesophilic, Gram-negative, coccus-shaped bacterium that was isolated from activated sludge; bioreactor treating piggery wastewater.

coccus-shaped
Gram-negative
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Alcaligenaceae*
	Genus	*Advenella*
	Species	**Advenella faeciporci**
	Full Scientific Name (LPSN)	Advenella faeciporci Matsuoka et al. 2012

Information on morphological and physiological properties Morphology

[Ref.: #30498]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.992

[Ref.: #30498]	Cell width	1.75 µm

[Ref.: #30498]	Cell shape	coccus-shaped

[Ref.: #30498]	Motility	no

[Ref.: #30498]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #24693]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #24693]

Culture medium growth

[Ref.: #24693]

Culture medium link

Medium recipe at MediaDive

[Ref.: #24693]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #24693]	growth	30 °C
[Ref.: #30498]	growth	10-45 °C
[Ref.: #30498]	optimum	30 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #24693]	Temperature range	mesophilic
[Ref.: #30498]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30498]			optimum	8
[Ref.: #30498]			growth	05-11

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.994

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30498]		NaCl		growth	0-4	%

[Ref.: #67770]

Observation

quinones: Q-8

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30498]	2-oxopentanoate ChEBI	+	carbon source
[Ref.: #30498]	acetate ChEBI	+	carbon source
[Ref.: #30498]	adipate ChEBI	+	carbon source
[Ref.: #68369]	adipate ChEBI	+	assimilation	* from API 20NE
[Ref.: #30498]	alanine ChEBI	+	carbon source
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #30498]	citrate ChEBI	+	carbon source
[Ref.: #68369]	D-glucose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	-	assimilation	* from API 20NE
[Ref.: #30498]	glucuronamide ChEBI	+	carbon source
[Ref.: #30498]	glutamate ChEBI	+	carbon source
[Ref.: #30498]	itaconate ChEBI	+	carbon source
[Ref.: #30498]	L-alaninamide ChEBI	+	carbon source
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #30498]	lactate ChEBI	+	carbon source
[Ref.: #30498]	leucine ChEBI	+	carbon source
[Ref.: #30498]	malate ChEBI	+	carbon source
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #30498]	methyl pyruvate ChEBI	+	carbon source
[Ref.: #68369]	N-acetylglucosamine ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	-	reduction	* from API 20NE
[Ref.: #30498]	ornithine ChEBI	+	carbon source
[Ref.: #30498]	phenylacetate ChEBI	+	carbon source
[Ref.: #30498]	proline ChEBI	+	carbon source
[Ref.: #30498]	propionate ChEBI	+	carbon source
[Ref.: #30498]	succinate ChEBI	+	carbon source
[Ref.: #30498]	threonine ChEBI	+	carbon source
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	-	3.2.1.21	* from API 20NE
[Ref.: #30498]	catalase	+	1.11.1.6
[Ref.: #30498]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #24693]	24599	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	+	+	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24693]	Sample type/isolated from	activated sludge; bioreactor treating piggery wastewater
[Ref.: #24693]	Country	Japan
[Ref.: #24693]	Country ISO 3 Code	JPN
[Ref.: #24693]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Nitrifying-denitrifying activated sludge from a laboratory-scale bioreactor treating piggery wastewater
* marker position based on {}

Isolation sources categories

#Engineered	#Bioreactor	-
#Engineered	#Waste	#Activated sludge
#Engineered	#Waste	#Wastewater

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB567741 (>99% sequence identity) for Advenella from Microbeatlas

Aquatic Samples	203
Soil Samples	62
Animal Samples	208
Plant Samples	60
Total Samples	533

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #24693]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24693]	Advenella faeciporci gene for 16S rRNA, partial sequence	AB567741	1506	ENA	797535 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Advenella faeciporci KCTC 23732	GCA_014652395	contig	GenBank	797535 tax ID	*
[Ref.: #66792]	Advenella faeciporci strain KCTC 23732	797535.4	wgs	PATRIC	797535 tax ID	*

[Ref.: #24693]	GC-content	49.5 mol%
[Ref.: #67770]	GC-content	49.5 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Advenella faeciporci strain KCTC 23732 PATRIC: 797535.4
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Advenella faeciporci strain KCTC 23732 PATRIC: 797535.4
[Ref.: #69480]	motile	yes	78.716	yes
[Ref.: #69480]	flagellated	no	55.308	yes
[Ref.: #69480]	gram-positive	no	98.23	yes
[Ref.: #69480]	anaerobic	no	97.392	no
[Ref.: #69480]	halophile	no	83.575	no
[Ref.: #69480]	spore-forming	no	95.886	no
[Ref.: #69480]	thermophile	no	97.566	no
[Ref.: #69480]	glucose-util	no	87.088	no
[Ref.: #69480]	aerobic	yes	77.792	no
[Ref.: #69480]	glucose-ferment	no	88.622	no

Availability in culture collections External links

[Ref.: #24693]

Culture collection no.

DSM 104993, JCM 17746, KCTC 23732

[Ref.: #91183]

SI-ID 406534

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Advenella alkanexedens sp. nov., an alkane-degrading bacterium isolated from biogas slurry samples.	Wang H, Zhou S, Wang Y, Kong D, Guo X, Zhu J, Dong W, Ruan Z	Int J Syst Evol Microbiol	10.1099/ijsem.0.000811	2015	*
Phylogeny	Advenella faeciporci sp. nov., a nitrite-denitrifying bacterium isolated from nitrifying-denitrifying activated sludge collected from a laboratory-scale bioreactor treating piggery wastewater.	Matsuoka M, Park S, An SY, Miyahara M, Kim SW, Kamino K, Fushinobu S, Yokota A, Wakagi T, Shoun H	Int J Syst Evol Microbiol	10.1099/ijs.0.037440-0	2012	*
Phylogeny	Advenella mandrilli sp. nov., a bacterium isolated from the faeces of Mandrillus sphinx.	Wang Q, Han XL, Fang ZQ, Zhang CL, Li C, Lu T	Antonie Van Leeuwenhoek	10.1007/s10482-021-01695-4	2022	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24693

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 104993

#30498

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26831 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68369

Automatically annotated from API 20NE .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#91183

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID406534.1 )

#26831

IJSEM 2986 2012 ( DOI 10.1099/ijs.0.037440-0 , PubMed 22307513 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Advenella faeciporci in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Advenella faeciporci strain KCTC 23732

Advenella faeciporci strain KCTC 23732

Change proposal

Change proposal