Name: Pseudonocardia sichuanensis DSM 104647
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 132903

Type strain:

Species: Pseudonocardia sichuanensis

Culture col. no.: DSM 104647, CCTCC AA 2010002, KCTC 19781, KLBMP 1115

Strain history: <- S Qin, Xuzhou Normal Univ., China

NCBI tax ID(s): 860246 (species)

SI-ID 399934

DSM 104647

Section

Pseudonocardia sichuanensis DSM 104647 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from healthy root of oil-seed plant Jatropha curcas L..

Gram-positive
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Pseudonocardiales*
	Family	*Pseudonocardiaceae*
	Genus	*Pseudonocardia*
	Species	**Pseudonocardia sichuanensis**
	Full Scientific Name (LPSN)	Pseudonocardia sichuanensis Qin et al. 2012

Information on morphological and physiological properties Morphology

[Ref.: #67771]	Gram stain	positive

Multimedia content

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Caption:

Medium 65 28°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #24691]			growth	28 °C
[Ref.: #67771]			growth	28 °C

[Ref.: #24691]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

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Oxygen tolerance

aerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24691]	Sample type/isolated from	healthy root of oil-seed plant Jatropha curcas L.
[Ref.: #24691]	Host species	Jatropha curcas
[Ref.: #24691]	Geographic location (country and/or sea, region)	city of Panzhihua, Sichuan Province
[Ref.: #24691]	Country	China
[Ref.: #24691]	Country ISO 3 Code	CHN
[Ref.: #24691]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From plant
[Ref.: #67771]	Geographic location (country and/or sea, region)	Sichuan
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Shrub (Scrub)
#Host Body-Site	#Plant	#Root (Rhizome)

What are isolation sources categories?

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Global distribution of 16S sequence HM153789 (>99% sequence identity) for Pseudonocardia from Microbeatlas

Aquatic Samples	89
Soil Samples	1214
Animal Samples	83
Plant Samples	337
Total Samples	1723

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

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Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24691]	Pseudonocardia sichuanensis strain KLBMP 1115 16S ribosomal RNA gene, partial sequence	HM153789	1497	ENA	860246 tax ID

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GC-content

69.8 mol%

Availability in culture collections External links

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Culture collection no.

DSM 104647, CCTCC AA 2010002, KCTC 19781, KLBMP 1115

[Ref.: #91181]

SI-ID 399934

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pseudonocardia sediminis sp. nov., isolated from marine sediment.	Zhang DF, Jiang Z, Li L, Liu BB, Zhang XM, Tian XP, Zhang S, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.057844-0	2013	*
Phylogeny	Pseudonocardia sichuanensis sp. nov., a novel endophytic actinomycete isolated from the root of Jatropha curcas L.	Qin S, Xing K, Fei SM, Lin Q, Chen XM, Cao CL, Sun Y, Wang Y, Li WJ, Jiang JH	Antonie Van Leeuwenhoek	10.1007/s10482-010-9504-7	2010	*
Phylogeny	Pseudonocardia kunmingensis sp. nov., an actinobacterium isolated from surface-sterilized roots of Artemisia annua L.	Zhao GZ, Li J, Huang HY, Zhu WY, Park DJ, Kim CJ, Xu LH, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.027607-0	2010	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24691

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 104647

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#91181

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID399934.1 )

* These data were automatically processed and therefore are not curated

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