Salinicola halophilus (DSM 14325, CECT 5903, LMG 23626)

Name: Salinicola halophilus (DSM 14325, CECT 5903, LMG 23626)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 132891

Type strain

Strain Designation CG4.1

Culture col. no. DSM 14325 CECT 5903 LMG 23626 CG4.1 UCCCB105 2 more

NCBI tax ID(s) 184065

Special Collections DSMZ Literature strains CIP UCCCB

History <- CECT <- M. Monteoliva-Sánchez, Depart. Microbiol., Facultad de Farmacia, Campus Univ. de Cartuja s/n, Spain; CG4.1 Chromohalobacter salarius Aguilera et al. 2007 - homotypic synonym, validly published. Transfer of Chromohalobacter salarius Aguilera et al. 2007 to the genus Salinicola Anan'ina et al. 2008, it was necessary to substitute a new specific epithet because t CIP <- 2007, CECT <- 2001, A. Ramos-Cormenzana, Granada Univ., Granada, Spain: strain CG4.1

Links

Salinicola halophilus CG4.1 is an aerobe, Gram-negative, motile bacterium that was isolated from solar saltern.

Gram-negative motile rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 194243

CECT 5903,DSM 14325,LMG 23626,CIP 109715

@ref 20215

Last LPSN update 2026-02-09 11:31:49

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Oceanospirillales

Family Halomonadaceae

Genus Salinicola

Species Salinicola halophilus

Full scientific name Salinicola halophilus de la Haba et al. 2010

Synonyms (1)

Chromohalobacter salarius

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
32093	negative	2.5-3.2 µm	1.2-1.3 µm	rod-shaped
125438	negative				99.494
125439	negative				98.6
119818	negative			rod-shaped

Pigmentation

32093

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
24679	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)	Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514; with strain-specific modifications) Composition: NaCl 40.0 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
37822	Marine agar (MA)		Distilled water make up to (1000.000 ml);Marine agar (55.100 g)
119818	CIP Medium 13	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
24679	positive	growth	28
32093	positive	growth	15-45
32093	positive	optimum	35
37822	positive	growth	30
67772	positive	minimum	15
67772	positive	optimum	35
67772	positive	maximum	45

Culture pH

@ref	Ability	Type	PH	PH range
67772	positive	maximum	9.0
67772	positive	minimum	5.0
32093	positive	optimum	7
67772	positive	optimum	7.0
32093	positive	growth	05-09	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
32093	aerobe
125439	aerobe	95.3

Spore formation

@ref	Spore formation	Confidence
32093
125438		90.002
125439		98.2

Halophily

@ref	Salt	Growth	Tested relation	Concentration
32093	NaCl	positive	growth	03-25 %
32093	NaCl	positive	optimum	7.5-10 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
32093	30089 ChEBI	acetate	+	carbon source
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
68371	18305 ChEBI	arbutin	-	builds acid from	from API 50CH acid
32093	16947 ChEBI	citrate	+	carbon source
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	-	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	-	builds acid from	from API 50CH acid
68371	16024 ChEBI	D-mannose	-	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
68371	4853 ChEBI	esculin	-	builds acid from	from API 50CH acid
32093	15740 ChEBI	formate	+	carbon source
32093	28757 ChEBI	fructose	+	carbon source
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
32093	28260 ChEBI	galactose	+	carbon source
32093	24265 ChEBI	gluconate	+	carbon source
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
32093	17234 ChEBI	glucose	+	carbon source
68371	17754 ChEBI	glycerol	-	builds acid from	from API 50CH acid
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
32093	24996 ChEBI	lactate	+	carbon source
32093	17716 ChEBI	lactose	+	carbon source
32093	25115 ChEBI	malate	+	carbon source
32093	15792 ChEBI	malonate	+	carbon source
68371	17306 ChEBI	maltose	-	builds acid from	from API 50CH acid
32093	29864 ChEBI	mannitol	+	carbon source
32093	37684 ChEBI	mannose	+	carbon source
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
68371	59640 ChEBI	N-acetylglucosamine	-	builds acid from	from API 50CH acid
32093	17632 ChEBI	nitrate	+	reduction
119818	17632 ChEBI	nitrate	-	reduction
119818	16301 ChEBI	nitrite	-	reduction
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371		Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
32093	17272 ChEBI	propionate	+	carbon source
32093	15361 ChEBI	pyruvate	+	carbon source
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
68371	17814 ChEBI	salicin	-	builds acid from	from API 50CH acid
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
32093	30031 ChEBI	succinate	+	carbon source
68371	17992 ChEBI	sucrose	-	builds acid from	from API 50CH acid
68371	27082 ChEBI	trehalose	-	builds acid from	from API 50CH acid
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Metabolite production

@ref	Chebi-ID	Metabolite	Production
32093	16136 ChEBI	hydrogen sulfide
119818	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
32093	catalase	+	1.11.1.6
119818	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	-		from API zym
119818	oxidase	-
68382	trypsin	-	3.4.21.4	from API zym
119818	urease	-	3.5.1.5
68382	valine arylamidase	+		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
119818	-	+	+	+	-	+	+	-	-	-	+	-	-	-	-	-	-	-	-	-

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
119818	not determinedn.d.	-	-	-	+/-	+/-	+/-	-	-	-	+/-	+/-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+/-	-	+/-	+/-	-	-	-	-	-	-	-	-	+/-	-	+/-	-	+/-	+/-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Condition	#Saline

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
24679	solar saltern		Almería, Cabo de Gata	Spain	ESP	Europe
67772	Water from salt saltern	1993	Andalusia, Cabo de Gata	Spain	ESP	Europe	36.7833	-2.1 36.7833/-2.1
119818	Environment, Water, salt saltern		Cabo de Gata, Almeria	Spain	ESP	Europe

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
24679	1	Risk group (German classification)
67772	1
119818	1	Risk group (French classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67772	ASM320615v1 assembly for Salinicola halophilus CECT 5903	scaffold	GCA_003206155	184065.3	2894362263	184065	75.32

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
24679	Chromohalobacter salarius partial 16S rRNA gene, type strain CG4.1T	AJ427626	1535		184065

GC content

@ref	GC-content (mol%)	Method
24679	63.6	thermal denaturation, midpoint method (Tm)
32093	63.6

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Salinicola halophilus CECT 5903
NCBI: GCA_003206155

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	98.20	no
125439	motility	BacteriaNetⓘ	yes	78.80	no
125439	gram_stain	BacteriaNetⓘ	negative	98.60	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	95.30	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Salinicola halophilus strain CECT 5903
PATRIC: 184065.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.49	yes
125438	anaerobic	anaerobicⓘ	no	97.70	yes
125438	spore-forming	spore-formingⓘ	no	90.00	yes
125438	thermophilic	thermophileⓘ	no	98.78	no
125438	aerobic	aerobicⓘ	yes	85.07	yes
125438	flagellated	motile2+ⓘ	yes	67.17	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Taxonomic study of the genus Salinicola: transfer of Halomonas salaria and Chromohalobacter salarius to the genus Salinicola as Salinicola salarius comb. nov. and Salinicola halophilus nom. nov., respectively.	de la Haba RR, Sanchez-Porro C, Marquez MC, Ventosa A	Int J Syst Evol Microbiol	10.1099/ijs.0.014480-0	2009
Phylogeny	Phytohalomonas tamaricis gen. nov., sp. nov., an endophytic bacterium isolated from Tamarix ramosissima roots growing in Kumtag desert.	Liu L, Wang SY, He CF, Zhang XX, Chi M, Liang LX, Li LB	Arch Microbiol	10.1007/s00203-019-01724-x	2019
Phylogeny	Salinicola zeshunii sp. nov., a moderately halophilic bacterium isolated from soil of a chicken farm.	Cao L, Yan Q, Ni H, Hu G, Hong Q, Li S	Curr Microbiol	10.1007/s00284-012-0259-4	2012
Phylogeny	Chromohalobacter salarius sp. nov., a moderately halophilic bacterium isolated from a solar saltern in Cabo de Gata, Almeria, southern Spain.	Aguilera M, Cabrera A, Incerti C, Fuentes S, Russell NJ, Ramos-Cormenzana A, Monteoliva-Sanchez M	Int J Syst Evol Microbiol	10.1099/ijs.0.64953-0	2007

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#24679	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14325
#28339	IJSEM 1238 2007 ( DOI 10.1099/ijs.0.64953-0 , PubMed 17551036 )
#32093	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28339
#37822	; Curators of the CIP;
#67772	The University of Coimbra Bacteria Culture Collection (UCCCB) ; Curators of the UCCCB;
#68371	Automatically annotated from API 50CH acid .
#68382	Automatically annotated from API zym .
#119818	Collection of Institut Pasteur ; Curators of the CIP; CIP 109715
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Salinicola halophilus (DSM 14325, CECT 5903, LMG 23626)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Metabolite production

Enzymes

API zym

API 50CHac

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_003206155

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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