Name: Salinicola halophilus CG4.1
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 132891

Type strain:

Species: Salinicola halophilus

Strain Designation: CG4.1

Culture col. no.: DSM 14325, CECT 5903, LMG 23626, UCCCB105, CG 4.1, CIP 109715

Strain history: CIP <- 2007, CECT <- 2001, A. Ramos-Cormenzana, Granada Univ., Granada, Spain: strain CG4.1

NCBI tax ID(s): 184065 (species)

SI-ID 194243

CECT 5903, DSM 14325, LMG 23626, CIP 109715

Special Collections

Section

Salinicola halophilus CG4.1 is an aerobe, Gram-negative, motile bacterium that was isolated from solar saltern.

Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Oceanospirillales*
	Family	*Halomonadaceae*
	Genus	*Salinicola*
	Species	**Salinicola halophilus**
	Full Scientific Name (LPSN)	Salinicola halophilus de la Haba et al. 2010

Synonym

Chromohalobacter salarius

Information on morphological and physiological properties Morphology

[Ref.: #32093]	Gram stain	negative
[Ref.: #119818]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.494

[Ref.: #32093]	Cell length	2.5-3.2 µm

[Ref.: #32093]	Cell width	1.2-1.3 µm

[Ref.: #32093]	Cell shape	rod-shaped
[Ref.: #119818]	Cell shape	rod-shaped

[Ref.: #32093]	Motility	yes
[Ref.: #119818]	Motility	no

[Ref.: #32093]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #24679]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #24679]

Culture medium growth

[Ref.: #24679]

Culture medium link

Medium recipe at MediaDive

[Ref.: #24679]

Culture medium composition

expand / minimize

[Ref.: #37822]

Culture medium

Marine agar (MA)

[Ref.: #37822]

Culture medium growth

[Ref.: #37822]

Culture medium composition

expand / minimize

[Ref.: #119818]

Culture medium

CIP Medium 13

[Ref.: #119818]

Culture medium growth

[Ref.: #119818]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #24679]	growth	28 °C
[Ref.: #32093]	growth	15-45 °C
[Ref.: #32093]	optimum	35 °C
[Ref.: #37822]	growth	30 °C
[Ref.: #67772]	minimum	15 °C
[Ref.: #67772]	optimum	35 °C
[Ref.: #67772]	maximum	45 °C

		pH
[Ref.: #67772]	maximum	9.0
[Ref.: #67772]	minimum	5.0
[Ref.: #32093]	optimum	7
[Ref.: #67772]	optimum	7.0
[Ref.: #32093]	growth	05-09

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32093]

Oxygen tolerance

aerobe

[Ref.: #32093]	Ability of spore formation	no
[Ref.: #69480]	Ability of spore formation	no Confidence in %90.002
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32093]		NaCl		growth	03-25	%
[Ref.: #32093]		NaCl		optimum	7.5-10	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32093]	acetate ChEBI	+	carbon source
[Ref.: #68371]	amygdalin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	arbutin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #32093]	citrate ChEBI	+	carbon source
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fructose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	esculin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #32093]	formate ChEBI	+	carbon source
[Ref.: #32093]	fructose ChEBI	+	carbon source
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #32093]	galactose ChEBI	+	carbon source
[Ref.: #32093]	gluconate ChEBI	+	carbon source
[Ref.: #68371]	gluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #32093]	glucose ChEBI	+	carbon source
[Ref.: #68371]	glycerol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #32093]	lactate ChEBI	+	carbon source
[Ref.: #32093]	lactose ChEBI	+	carbon source
[Ref.: #32093]	malate ChEBI	+	carbon source
[Ref.: #32093]	malonate ChEBI	+	carbon source
[Ref.: #68371]	maltose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #32093]	mannitol ChEBI	+	carbon source
[Ref.: #32093]	mannose ChEBI	+	carbon source
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	N-acetylglucosamine ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #32093]	nitrate ChEBI	+	reduction
[Ref.: #119818]	nitrate ChEBI	-	reduction
[Ref.: #119818]	nitrite ChEBI	-	reduction
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #32093]	propionate ChEBI	+	carbon source
[Ref.: #32093]	pyruvate ChEBI	+	carbon source
[Ref.: #68371]	raffinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	salicin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	starch ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #32093]	succinate ChEBI	+	carbon source
[Ref.: #68371]	sucrose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	trehalose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	turanose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #32093]		hydrogen sulfide ChEBI	yes
[Ref.: #119818]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #32093]	catalase	+	1.11.1.6
[Ref.: #119818]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #119818]	oxidase	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #119818]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #119818]	11638	not determinedn.d.	-	-	-	+/-	+/-	+/-	-	-	-	+/-	+/-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+/-	-	+/-	+/-	-	-	-	-	-	-	-	-	+/-	-	+/-	-	+/-	+/-	-	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #119818]	12056	-	+	+	+	-	+	+	-	-	-	+	-	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24679]	Sample type/isolated from	solar saltern
[Ref.: #24679]	Geographic location (country and/or sea, region)	Almería, Cabo de Gata
[Ref.: #24679]	Country	Spain
[Ref.: #24679]	Country ISO 3 Code	ESP
[Ref.: #24679]	Continent	Europe

[Ref.: #67772]	Sample type/isolated from	Water from salt saltern
[Ref.: #67772]	Sampling date	1993
[Ref.: #67772]	Geographic location (country and/or sea, region)	Andalusia, Cabo de Gata
[Ref.: #67772]	Country	Spain
[Ref.: #67772]	Country ISO 3 Code	ESP
[Ref.: #67772]	Continent	Europe
[Ref.: #67772]	Geographic location	36.7833°/-2.1000°

[Ref.: #119818]	Sample type/isolated from	Environment, Water, salt saltern
[Ref.: #119818]	Geographic location (country and/or sea, region)	Cabo de Gata, Almeria
[Ref.: #119818]	Country	Spain
[Ref.: #119818]	Country ISO 3 Code	ESP
[Ref.: #119818]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Condition

#Saline

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #24679]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #67772]	Biosafety level	1
[Ref.: #119818]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24679]	Chromohalobacter salarius partial 16S rRNA gene, type strain CG4.1T	AJ427626	1535	GenBank ENA	184065 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67772]	Salinicola halophilus CECT 5903	GCA_003206155	scaffold	GenBank ENA	184065 tax ID
[Ref.: #66792]	Salinicola halophilus strain CECT 5903	184065.3	wgs	PATRIC	184065 tax ID	*
[Ref.: #66792]	Salinicola halophilus CECT 5903	2894362263	draft	JGI IMG/M	184065 tax ID	*

[Ref.: #24679]	GC-content	63.6 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #32093]	GC-content	63.6 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Salinicola halophilus CECT 5903 NCBI: GCA_003206155.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Salinicola halophilus strain CECT 5903 PATRIC: 184065.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	99.494	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	97.702	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	90.002	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	98.778	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	85.066	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	67.174	no

Availability in culture collections External links

[Ref.: #24679]

Culture collection no.

DSM 14325, CECT 5903, LMG 23626, UCCCB105, CG 4.1, CIP 109715

[Ref.: #91171]

SI-ID 194243

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Phytohalomonas tamaricis gen. nov., sp. nov., an endophytic bacterium isolated from Tamarix ramosissima roots growing in Kumtag desert.	Liu L, Wang SY, He CF, Zhang XX, Chi M, Liang LX, Li LB	Arch Microbiol	10.1007/s00203-019-01724-x	2019	*
Phylogeny	Salinicola zeshunii sp. nov., a moderately halophilic bacterium isolated from soil of a chicken farm.	Cao L, Yan Q, Ni H, Hu G, Hong Q, Li S	Curr Microbiol	10.1007/s00284-012-0259-4	2012	*
Phylogeny	Taxonomic study of the genus Salinicola: transfer of Halomonas salaria and Chromohalobacter salarius to the genus Salinicola as Salinicola salarius comb. nov. and Salinicola halophilus nom. nov., respectively.	de la Haba RR, Sanchez-Porro C, Marquez MC, Ventosa A	Int J Syst Evol Microbiol	10.1099/ijs.0.014480-0	2009	*
Phylogeny	Chromohalobacter salarius sp. nov., a moderately halophilic bacterium isolated from a solar saltern in Cabo de Gata, Almeria, southern Spain.	Aguilera M, Cabrera A, Incerti C, Fuentes S, Russell NJ, Ramos-Cormenzana A, Monteoliva-Sanchez M	Int J Syst Evol Microbiol	10.1099/ijs.0.64953-0	2007	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24679

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14325

#32093

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28339 (see below)

#37822 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67772 The University of Coimbra Bacteria Culture Collection (UCCCB) ; Curators of the UCCCB;

#68371

Automatically annotated from API 50CH acid .

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#91171

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID194243.1 )

#119818 Collection of Institut Pasteur ; Curators of the CIP; CIP 109715

#28339

IJSEM 1238 2007 ( DOI 10.1099/ijs.0.64953-0 , PubMed 17551036 )

* These data were automatically processed and therefore are not curated

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Salinicola halophilus CECT 5903

Salinicola halophilus strain CECT 5903

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Change proposal