Name: Amycolatopsis dongchuanensis DSM 45675
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 13287

Type strain:

Species: Amycolatopsis dongchuanensis

Variant: Isotype of BacDive ID 13286

Culture col. no.: DSM 45675, CCTCC AA 2011016, JCM 18054, YIM 75904

Strain history: S.-K. Tang YIM 75904.

NCBI tax ID(s): 1070866 (species)

SI-ID 402143

DSM 45675

Other strains from Amycolatopsis dongchuanensis

A. dongchuanensis DSM 45426, CCTCC AA 2011016, JCM ...

Section

Amycolatopsis dongchuanensis DSM 45675 is a mesophilic bacterium that was isolated from soil from a dry and hot river valley.

mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Pseudonocardiales*
	Family	*Pseudonocardiaceae*
	Genus	*Amycolatopsis*
	Species	**Amycolatopsis dongchuanensis**
	Full Scientific Name (LPSN)	Amycolatopsis dongchuanensis Nie et al. 2012

Information on morphological and physiological properties Morphology

[Ref.: #69420]	Colony color	Broom yellow (1032)
[Ref.: #69420]	Cultivation medium used	ISP 5

[Ref.: #69420]	Colony color	Ivory (1014)
[Ref.: #69420]	Cultivation medium used	suter with tyrosine

[Ref.: #69420]	Colony color	Ivory (1014)
[Ref.: #69420]	Cultivation medium used	suter without tyrosine

[Ref.: #69420]	Colony color	Sand yellow (1002)
[Ref.: #69420]	Cultivation medium used	ISP 4

[Ref.: #69420]	Colony color	Sand yellow (1002)
[Ref.: #69420]	Cultivation medium used	ISP 6

[Ref.: #69420]	Colony color	Sand yellow (1002), broom yellow (1032)
[Ref.: #69420]	Cultivation medium used	ISP 2

[Ref.: #69420]	Colony color	Sand yellow (1002), ivory (1014)
[Ref.: #69420]	Cultivation medium used	ISP 7

[Ref.: #69420]	Colony color	Zinc yellow (1018)
[Ref.: #69420]	Cultivation medium used	ISP 3

[Ref.: #69420]	Pigment production	no
[Ref.: #69420]	Pigment name	soluble pigment

[Ref.: #69420]	Multicellular complex forming ability	no
[Ref.: #69420]	Multicellular complex name	Aerial mycelium
[Ref.: #69420]	Medium Name (multicellularity)	ISP 2

[Ref.: #69420]	Multicellular complex forming ability	no
[Ref.: #69420]	Multicellular complex name	Aerial mycelium
[Ref.: #69420]	Medium Name (multicellularity)	ISP 3

[Ref.: #69420]	Multicellular complex forming ability	no
[Ref.: #69420]	Multicellular complex name	Aerial mycelium
[Ref.: #69420]	Medium Name (multicellularity)	ISP 4

[Ref.: #69420]	Multicellular complex forming ability	no
[Ref.: #69420]	Multicellular complex name	Aerial mycelium
[Ref.: #69420]	Medium Name (multicellularity)	ISP 5

[Ref.: #69420]	Multicellular complex forming ability	no
[Ref.: #69420]	Multicellular complex name	Aerial mycelium
[Ref.: #69420]	Medium Name (multicellularity)	ISP 6

[Ref.: #69420]	Multicellular complex forming ability	no
[Ref.: #69420]	Multicellular complex name	Aerial mycelium
[Ref.: #69420]	Medium Name (multicellularity)	ISP 7

[Ref.: #69420]	Multicellular complex forming ability	no
[Ref.: #69420]	Multicellular complex name	Aerial mycelium
[Ref.: #69420]	Medium Name (multicellularity)	suter with tyrosine

[Ref.: #69420]	Multicellular complex forming ability	no
[Ref.: #69420]	Multicellular complex name	Aerial mycelium
[Ref.: #69420]	Medium Name (multicellularity)	suter without tyrosine

Multimedia content

[Ref.: #18041]

Caption:

Medium 65 28°C

[Ref.: #18041]

Intellectual property rights:

[Ref.: #69420]

Caption:

Plates (65, ISP2, ISP3, ISP4, ISP5, ISP7)

[Ref.: #69420]

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

[Ref.: #69420]

Caption:

Plates (65, ISP2, ISP3, ISP4, ISP5, ISP7)

[Ref.: #69420]

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

Information on culture and growth conditions Culture and growth conditions

[Ref.: #18041]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #18041]

Culture medium growth

[Ref.: #18041]

Culture medium link

Medium recipe at MediaDive

[Ref.: #18041]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #18041]			growth	28 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #18041]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #69420]		NaCl		growth	0-5	%

[Ref.: #67770]

Observation

quinones: MK-8(H₄)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #69420]	arabinose ChEBI	+/-	growth
[Ref.: #69420]	cellulose ChEBI	-	growth
[Ref.: #68379]	D-glucose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	esculin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #69420]	fructose ChEBI	+	growth
[Ref.: #68379]	gelatin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #69420]	glucose ChEBI	+	growth
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #69420]	inositol ChEBI	+	growth
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #69420]	mannose ChEBI	+	growth
[Ref.: #68379]	nitrate ChEBI	-	reduction	* from API Coryne
[Ref.: #69420]	raffinose ChEBI	-	growth
[Ref.: #69420]	rhamnose ChEBI	+	growth
[Ref.: #69420]	sucrose ChEBI	+	growth
[Ref.: #68379]	sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	urea ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69420]	xylose ChEBI	+	growth
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68379]	alkaline phosphatase	+	3.1.3.1	* from API Coryne, API zym
[Ref.: #68382]	alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68379]	alpha-glucosidase	-	3.2.1.20	* from API Coryne
[Ref.: #68382]	alpha-mannosidase	+	3.2.1.24	* from API zym
[Ref.: #68379]	beta-galactosidase	-	3.2.1.23	* from API Coryne, API zym
[Ref.: #68379]	beta-glucosidase	+	3.2.1.21	* from API Coryne, API zym
[Ref.: #68379]	beta-glucuronidase	-	3.2.1.31	* from API Coryne, API zym
[Ref.: #68379]	gelatinase	+		* from API Coryne
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68379]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API Coryne, API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API Coryne
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #68379]	urease	-	3.5.1.5	* from API Coryne
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #69420]	3913	-	-	-	+	-	-	-	+	+	-	+	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #69420]	6097	not determinedn.d.	+	+/-	+/-	-	+	+	+/-	+	+	+	+	-	-	-	+	+	+	+	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #18041]	Sample type/isolated from	soil from a dry and hot river valley
[Ref.: #18041]	Geographic location (country and/or sea, region)	Yunnan province, Dongchuan county
[Ref.: #18041]	Country	China
[Ref.: #18041]	Country ISO 3 Code	CHN
[Ref.: #18041]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil from a dry and hot river valley
[Ref.: #67770]	Geographic location (country and/or sea, region)	Dongchuan District, Yunnan Province, south-west China
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#River (Creek)
#Environmental	#Terrestrial	#Soil
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18041]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #18041]	Amycolatopsis dongchuanensis strain YIM 75904 16S ribosomal RNA gene, partial sequence	JN656710	1488	ENA	1070866 tax ID
[Ref.: #20218]	Amycolatopsis dongchuanensis strain YIM 75904 16S ribosomal RNA gene, partial sequence	JN188936	1488	ENA	1070866 tax ID	*

[Ref.: #18041]

GC-content

68.5 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #18041]

Culture collection no.

DSM 45675, CCTCC AA 2011016, JCM 18054, YIM 75904

[Ref.: #82488]

SI-ID 402143

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Amycolatopsis rhizosphaerae sp. nov., isolated from rice rhizosphere soil.	Thawai C	Int J Syst Evol Microbiol	10.1099/ijsem.0.002704	2018	*
Phylogeny	Amycolatopsis cihanbeyliensis sp. nov., a halotolerant actinomycete isolated from a salt mine.	Tatar D, Sazak A, Guven K, Cetin D, Sahin N	Int J Syst Evol Microbiol	10.1099/ijs.0.050963-0	2013	*
Phylogeny	Amycolatopsis magusensis sp. nov., isolated from soil.	Camas M, Sahin N, Sazak A, Sproer C, Klenk HP	Int J Syst Evol Microbiol	10.1099/ijs.0.042770-0	2012	*
Phylogeny	Amycolatopsis dongchuanensis sp. nov., an actinobacterium isolated from soil.	Nie GX, Ming H, Li S, Zhou EM, Cheng J, Tang X, Feng HG, Tang SK, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.038125-0	2011	*

References

#18041

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45675

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69420

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#82488

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID402143.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Amycolatopsis dongchuanensis in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF